1-32713296-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713296
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713296
    reference: chr 1
allele count: 2
allele frequency: 1.864280387770321e-5
allele num: 107280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+13G>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 758
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62172
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8440
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-32713300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713300
    reference: chr 1
allele count: 1
allele frequency: 9.328184175668365e-6
allele num: 107202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+17G>A
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
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  allele num: 8988
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population: South Asian
  type: Population
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population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 11434
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-32713310-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713310
    reference: chr 1
allele count: 67
allele frequency: 6.255602031670153e-4
allele num: 107104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+27G>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
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  allele num: 8962
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population: South Asian
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population: Other
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population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

1-32713315-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713315
    reference: chr 1
allele count: 1
allele frequency: 9.345619708042841e-6
allele num: 107002
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+32G>C
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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population: Latino
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 61994
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-32713318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713318
    reference: chr 1
allele count: 1
allele frequency: 9.350688210652304e-6
allele num: 106944
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+35C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.112594570538496e-4
  allele num: 8988
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8436
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8936
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-32713322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713322
    reference: chr 1
allele count: 1
allele frequency: 9.35506202406122e-6
allele num: 106894
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.261+39C>G
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 61932
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population: European (Finnish)
  type: Population
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  allele num: 6438
  num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 8988
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
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site quality: DP

1-32713929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713929
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4572
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.262-43C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 244
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population: South Asian
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population: Latino
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  allele frequency: 0.0e0
  allele num: 48
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32713931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713931
    reference: chr 1
allele count: 3
allele frequency: 6.252605252188412e-4
allele num: 4798
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.262-41G>A
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
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population: European (Finnish)
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population: European (Non-Finnish)
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  allele num: 2308
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population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
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site quality: MQ
site quality: InbreedingCoeff
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site quality: FS
site quality: DP
site quality: QD

1-32713943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713943
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713943
    reference: chr 1
allele count: 1
allele frequency: 1.567889620570712e-4
allele num: 6378
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.262-29A>G
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 34
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 372
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 338
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-32713959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713959
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.262-13C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25358
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 51
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 160
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 212
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 686
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/1-32713967-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713967
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713967
    reference: chr 1
allele count: 8
allele frequency: 5.158627805003869e-4
allele num: 15508
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.262-5C>A
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.262-5C>A
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 274
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population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1228
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-32713975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713975
    reference: chr 1
allele count: 23
allele frequency: 1.030373622435266e-3
allele num: 22322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.265G>A
  hgvsp: ENSP00000362684.3:p.Glu89Lys
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 802
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu89Lys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1880
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 20
  allele frequency: 1.831501831501832e-3
  allele num: 10920
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

1-32713986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713986
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713986
    reference: chr 1
allele count: 2
allele frequency: 6.476264490641798e-5
allele num: 30882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.276G>A
  hgvsp: ENST00000373582.3:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30874
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
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hgvs: p.Ala92Ala
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8246
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2606
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

1-32713987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713987
    reference: chr 1
allele count: 1
allele frequency: 3.104047678172337e-5
allele num: 32216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.277C>T
  hgvsp: ENSP00000362684.3:p.Gln93Ter
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln93Ter
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 736
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 930
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-32713988-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713988
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713988
    reference: chr 1
allele count: 1
allele frequency: 2.980625931445604e-5
allele num: 33550
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.278A>C
  hgvsp: ENSP00000362684.3:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln93Pro
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 5.569169079973268e-5
  allele num: 17956
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 216
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-32713993-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713993
    reference: chr 1
allele count: 4
allele frequency: 1.052964093924397e-4
allele num: 37988
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.283A>C
  hgvsp: ENST00000373582.3:c.283A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg95Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 4
  allele frequency: 4.44247001332741e-4
  allele num: 9004
  num of homozygotes: 0
population: African
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  allele frequency: 0.0e0
  allele num: 2596
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-32713996-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32713996
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32713997
    reference: chr 1
allele count: 1
allele frequency: 2.49912530614285e-5
allele num: 40014
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.287dupA
  hgvsp: ENSP00000362684.3:p.Leu97AlafsTer30
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu97AlafsTer30
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
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  allele num: 274
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population: East Asian
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  allele num: 3288
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

1-32714006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714006
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714006
    reference: chr 1
allele count: 1076
allele frequency: 2.226729026116469e-2
allele num: 48322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.296G>C
  hgvsp: ENSP00000362684.3:p.Gly99Ala
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 999
  bin: 9.75e1
  variant carriers: 998
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7046
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 25286
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.25e1
  variant carriers: 15
hgvs: p.Gly99Ala
num of homozygotes: 8
population: European (Non-Finnish)
  type: Population
  allele count: 700
  allele frequency: 2.537335073220241e-2
  allele num: 27588
  num of homozygotes: 3
population: Other
  type: Population
  allele count: 7
  allele frequency: 2.1875e-2
  allele num: 320
  num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-32714018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714018
    reference: chr 1
allele count: 1
allele frequency: 1.763792860166502e-5
allele num: 56696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.308G>A
  hgvsp: ENSP00000362684.3:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg103Gln
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 3.044881554107545e-5
  allele num: 32842
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4552
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

1-32714021-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714021
    reference: chr 1
allele count: 4
allele frequency: 6.850018837551804e-5
allele num: 58394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.311T>G
  hgvsp: ENSP00000362684.3:p.Leu104Arg
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1035
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  variant carriers: 0
hgvs: p.Leu104Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 378
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 33962
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-32714024-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714024
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714024
    reference: chr 1
allele count: 2
allele frequency: 3.305785123966942e-5
allele num: 60500
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.314G>C
  hgvsp: ENSP00000362684.3:p.Arg105Pro
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 433
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hgvs: p.Arg105Pro
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10876
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3538
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-32714033-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714033
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714033
    reference: chr 1
allele count: 2
allele frequency: 3.092337188447028e-5
allele num: 64676
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.323T>G
  hgvsp: ENSP00000362684.3:p.Leu108Arg
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu108Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 430
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4360
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-32714037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714037
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714037
    reference: chr 1
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.327C>T
  hgvsp: ENST00000373582.3:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22507
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His109His
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11284
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.591479216336685e-5
  allele num: 38588
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-32714039-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714039
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714039
    reference: chr 1
allele count: 3
allele frequency: 4.463355848483947e-5
allele num: 67214
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.329G>C
  hgvsp: ENSP00000362684.3:p.Arg110Pro
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 297
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 429
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
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  variant carriers: 0
hgvs: p.Arg110Pro
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5348
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4442
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-32714047-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714047
    reference: chr 1
allele count: 10
allele frequency: 1.447094234776569e-4
allele num: 69104
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.337A>G
  hgvsp: ENSP00000362684.3:p.Met113Val
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1493
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  variant carriers: 0
hgvs: p.Met113Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 2.122241086587436e-4
  allele num: 4712
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11414
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-32714049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714049
    reference: chr 1
allele count: 30
allele frequency: 4.341282704329706e-4
allele num: 69104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.339G>A
  hgvsp: ENSP00000362684.3:p.Met113Ile
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1163
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 6.75e1
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hgvs: p.Met113Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11428
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 9
  allele frequency: 1.911639762107052e-3
  allele num: 4708
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-32714060-G-GTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714060
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714062
    reference: chr 1
allele count: 11
allele frequency: 1.618265807514638e-4
allele num: 67974
alternate allele: GTC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.351_352dupTC
  hgvsp: ENSP00000362684.3:p.His118LeufsTer23
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His118LeufsTer23
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4550
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 450
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-32714062-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714062
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714062
    reference: chr 1
allele count: 2
allele frequency: 2.984451010236667e-5
allele num: 67014
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.352C>T
  hgvsp: ENSP00000362684.3:p.His118Tyr
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His118Tyr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 38476
  num of homozygotes: 0
population: African
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  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
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site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
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1-32714065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714065
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714065
    reference: chr 1
allele count: 11
allele frequency: 1.65090799939967e-4
allele num: 66630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.355C>T
  hgvsp: ENST00000373582.3:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu119Leu
num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 4428
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population: European (Non-Finnish)
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  allele num: 38210
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
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1-32714077-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714077
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714077
    reference: chr 1
allele count: 3
allele frequency: 4.847936395074496e-5
allele num: 61882
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.367C>G
  hgvsp: ENSP00000362684.3:p.Leu123Val
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Leu123Val
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population: Latino
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population: European (Non-Finnish)
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  allele num: 34894
  num of homozygotes: 0
population: African
population: Other
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population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
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site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
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http://identifiers.org/exac.variant/1-32714087-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714087
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714087
    reference: chr 1
allele count: 1
allele frequency: 1.798043728423475e-5
allele num: 55616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.377A>C
  hgvsp: ENSP00000362684.3:p.Glu126Ala
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu126Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 374
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3440
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

1-32714091-C-CGAGCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714097
    reference: chr 1
allele count: 5
allele frequency: 9.5697442964324e-5
allele num: 52248
alternate allele: CGAGCTG
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.398_403dupTGGAGC
  hgvsp: ENSP00000362684.3:p.Leu133_Glu134dup
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23023
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu133_Glu134dup
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 348
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1656
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-32714091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714091
    reference: chr 1
allele count: 3
allele frequency: 5.74184657785944e-5
allele num: 52248
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.381C>T
  hgvsp: ENST00000373582.3:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 23023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala127Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 1.044640991712515e-4
  allele num: 28718
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1656
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-32714102-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714102
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714102
    reference: chr 1
allele count: 1
allele frequency: 2.490535963339311e-5
allele num: 40152
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.392T>C
  hgvsp: ENSP00000362684.3:p.Leu131Pro
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23590
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 477
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu131Pro
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3144
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3090
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-32714112-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714112
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714112
    reference: chr 1
allele count: 1
allele frequency: 3.062787136294027e-5
allele num: 32650
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.402G>C
  hgvsp: ENSP00000362684.3:p.Glu134Asp
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 292
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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genotype quality: GenotypeQuality
  all individuals: 1183
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 23735
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu134Asp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1160
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.115075825156111e-4
  allele num: 8968
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-32714118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714118
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714118
    reference: chr 1
allele count: 2
allele frequency: 6.942997986530584e-5
allele num: 28806
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.408G>A
  hgvsp: ENST00000373582.3:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly136Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2180
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 210
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-32714120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714120
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714120
    reference: chr 1
allele count: 4
allele frequency: 1.459321415541773e-4
allele num: 27410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.410C>T
  hgvsp: ENSP00000362684.3:p.Ala137Val
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala137Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8594
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 4
  allele frequency: 2.016129032258064e-3
  allele num: 1984
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-32714123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714123
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714123
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.413G>A
  hgvsp: ENSP00000362684.3:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly138Asp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12378
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 638
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-32714138-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714138
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714138
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 20782
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.428C>G
  hgvsp: ENSP00000362684.3:p.Pro143Arg
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro143Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 174
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 378
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-32714154-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714154
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714154
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 16916
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.444G>C
  hgvsp: ENST00000373582.3:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu148Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 176
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 766
  num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-32714164-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714164
    reference: chr 1
allele count: 1
allele frequency: 6.436663233779608e-5
allele num: 15536
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.454C>A
  hgvsp: ENSP00000362684.3:p.Arg152Ser
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg152Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1102
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 110
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
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1-32714174-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714174
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714174
    reference: chr 1
allele count: 8
allele frequency: 5.723279439118615e-4
allele num: 13978
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.464T>G
  hgvsp: ENSP00000362684.3:p.Ile155Ser
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ile155Ser
num of homozygotes: 0
population: African
  type: Population
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  allele num: 986
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population: Other
  type: Population
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  allele num: 148
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population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
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site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-32714180-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714180
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714180
    reference: chr 1
allele count: 2
allele frequency: 1.523693432881304e-4
allele num: 13126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.470C>A
  hgvsp: ENSP00000362684.3:p.Ala157Asp
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ala157Asp
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population: Latino
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population: South Asian
population: European (Finnish)
population: East Asian
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population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
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1-32714188-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714188
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714188
    reference: chr 1
allele count: 1
allele frequency: 8.052826542116283e-5
allele num: 12418
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.478T>G
  hgvsp: ENSP00000362684.3:p.Phe160Val
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Phe160Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 24
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4028
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-32714193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714193
    reference: chr 1
allele count: 67
allele frequency: 5.63973063973064e-3
allele num: 11880
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.483C>T
  hgvsp: ENST00000373582.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr161Thr
num of homozygotes: 2
population: Latino
  type: Population
  allele count: 2
  allele frequency: 1.052631578947368e-2
  allele num: 190
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.594706798131811e-4
  allele num: 3854
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-32714209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714209
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714209
    reference: chr 1
allele count: 1
allele frequency: 1.096010521701008e-4
allele num: 9124
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*7C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 6
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population: South Asian
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population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 92
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-32714215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714215
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714215
    reference: chr 1
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*13C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
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population: Other
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population: East Asian
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  allele num: 204
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-32714217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714217
    reference: chr 1
allele count: 1
allele frequency: 1.375894331315355e-4
allele num: 7268
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*15C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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population: East Asian
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population: Other
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  allele num: 74
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population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS

1-32714218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714218
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32714218
    reference: chr 1
allele count: 1
allele frequency: 1.378929950358522e-4
allele num: 7252
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*16C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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  allele num: 144
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population: Other
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population: South Asian
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  allele num: 3634
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population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
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site quality: VQSLOD
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1-32714219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714219
    reference: chr 1
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    type: ExactPosition
    position: 32714219
    reference: chr 1
allele count: 1
allele frequency: 1.382743362831858e-4
allele num: 7232
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*17C>T
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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population: African
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population: European (Finnish)
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population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
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site quality: QD
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1-32714224-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714224
    reference: chr 1
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    type: ExactPosition
    position: 32714224
    reference: chr 1
allele count: 1
allele frequency: 1.520218911523259e-4
allele num: 6578
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*22T>C
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
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1-32714243-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714243
    reference: chr 1
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    reference: chr 1
allele count: 1
allele frequency: 2.329916123019571e-4
allele num: 4292
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*41T>A
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Finnish)
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population: Other
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reference allele: T
site quality: VQSLOD
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http://identifiers.org/exac.variant/1-32714245-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32714245
    reference: chr 1
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    type: ExactPosition
    position: 32714245
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183615
  ensembl protein: ENSP00000362684
  ensembl transcript: ENST00000373582
  gene symbol: FAM167B
  hgvsc: ENST00000373582.3:c.*43C>A
  variant of: http://identifiers.org/hgnc/28133
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6396
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 112
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 158
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 44
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-32739752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739752
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-174C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-174C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-81C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-102C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-174C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-174C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-47C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-81C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-174C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-174C>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11441
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26907
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32739754-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739754
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-79G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-172G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-79G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-45G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-172G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-100G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-172G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-172G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-45G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-172G>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-172G>C
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39326
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-32739771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739771
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739771
    reference: chr 1
allele count: 9
allele frequency: 1.773748521876232e-3
allele num: 5074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-62C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-155C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-155C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-83C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-155C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-155C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-62C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-155C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-155C>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18618
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30815
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-32739790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739790
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739790
    reference: chr 1
allele count: 1
allele frequency: 1.349892008639309e-4
allele num: 7408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-9G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-43G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-9G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-64G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-136G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-136G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-136G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-43G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-136G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-136G>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-136G>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-32739794-GGTGAAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739788
    reference: chr 1
allele count: 1
allele frequency: 1.092418614813196e-4
allele num: 9154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-3_3delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-37_-32delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-130_55-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-130_98-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-37_-32delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-3_3delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-130_75-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-58_-53delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-130_-5-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-130_-5-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-130_-5-125delTGAATG
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: coding sequence
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: GGTGAAT
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-32739796-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739796
    reference: chr 1
allele count: 248
allele frequency: 3.392612859097127e-2
allele num: 7310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.-3T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-37T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-130T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-37T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-58T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-130T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-130T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-130T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.-3T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-130T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-130T>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 1.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 30930
  bin: 7.5e0
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11697
  bin: 2.5e0
  variant carriers: 4
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

1-32739800-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739800
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 18320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-33T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-126T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-33T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-126T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-126T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.2T>A
  hgvsp: ENSP00000362658.2:p.Met1?
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-126T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-54T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-126T>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.2T>A
  hgvsp: ENSP00000436554.1:p.Met1?
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-126T>A
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: start lost
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27268
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-32739800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739800
    reference: chr 1
allele count: 1
allele frequency: 5.458515283842795e-5
allele num: 18320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.2T>C
  hgvsp: ENSP00000362658.2:p.Met1?
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-126T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.2T>C
  hgvsp: ENSP00000436554.1:p.Met1?
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-126T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-33T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-126T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-126T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-33T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-126T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-126T>C
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27268
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-32739805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739805
    reference: chr 1
allele count: 6
allele frequency: 2.950142590225194e-4
allele num: 20338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-28A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-28A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.7A>G
  hgvsp: ENSP00000362658.2:p.Ile3Val
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.7A>G
  hgvsp: ENSP00000436554.1:p.Ile3Val
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-121A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-49A>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33831
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ile3Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-32739810-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739810
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739810
    reference: chr 1
allele count: 1
allele frequency: 4.001920922042581e-5
allele num: 24988
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-116A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-116A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-23A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-44A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-116A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.12A>G
  hgvsp: ENST00000373557.2:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.12A>G
  hgvsp: ENST00000477031.2:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-116A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-116A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-23A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-116A>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro4Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-32739812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739812
    reference: chr 1
allele count: 1
allele frequency: 3.588860178007465e-5
allele num: 27864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-42G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-114G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-21G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.14G>A
  hgvsp: ENSP00000362658.2:p.Gly5Glu
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.14G>A
  hgvsp: ENSP00000436554.1:p.Gly5Glu
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-114G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-114G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-114G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-114G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-21G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-114G>A
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35603
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9625
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly5Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

1-32739819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739819
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739819
    reference: chr 1
allele count: 2
allele frequency: 5.686341407938133e-5
allele num: 35172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-14C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-107C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-107C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.21C>T
  hgvsp: ENST00000373557.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-14C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-107C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-35C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.21C>T
  hgvsp: ENST00000477031.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-107C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-107C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-107C>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35461
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 6.25e1
  variant carriers: 1
hgvs: p.His7His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-32739825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739825
    reference: chr 1
allele count: 1
allele frequency: 2.318141777551115e-5
allele num: 43138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-101C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-101C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.27C>T
  hgvsp: ENST00000477031.2:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.27C>T
  hgvsp: ENST00000373557.2:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-101C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-8C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-29C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-101C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-101C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-101C>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

1-32739826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739826
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739826
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 44782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-100A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-7A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-28A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-7A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.28A>G
  hgvsp: ENSP00000436554.1:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-100A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-100A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.28A>G
  hgvsp: ENSP00000362658.2:p.Arg10Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-100A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-100A>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-100A>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33320
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg10Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

1-32739828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739828
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739828
    reference: chr 1
allele count: 1
allele frequency: 2.079693869062474e-5
allele num: 48084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-98G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-98G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.30G>A
  hgvsp: ENST00000477031.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-98G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-98G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-6+1G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.30G>A
  hgvsp: ENST00000373557.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-27+1G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-6+1G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-98G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-98G>A
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-6+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

1-32739831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739831
    reference: chr 1
allele count: 2
allele frequency: 3.730647267300876e-5
allele num: 53610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-95C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-6+4C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-95C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-95C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-6+4C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-95C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-95C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.33C>G
  hgvsp: ENSP00000362658.2:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.33C>G
  hgvsp: ENSP00000436554.1:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-27+4C>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-95C>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30286
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr11Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-32739835-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739835
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739835
    reference: chr 1
allele count: 26
allele frequency: 4.299652720357202e-4
allele num: 60470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-91T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-6+8T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.37T>G
  hgvsp: ENSP00000362658.2:p.Trp13Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-27+8T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.37T>G
  hgvsp: ENSP00000436554.1:p.Trp13Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-6+8T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-91T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-91T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-91T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-91T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-91T>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27635
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18732
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp13Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

1-32739872-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739872
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739872
    reference: chr 1
allele count: 1
allele frequency: 8.678144959733408e-6
allele num: 115232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-6+45T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.74T>C
  hgvsp: ENSP00000436554.1:p.Val25Ala
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.74T>C
  hgvsp: ENSP00000362658.2:p.Val25Ala
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-6+45T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-54T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-26-33T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-54T>C
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val25Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-32739872-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739872
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739872
    reference: chr 1
allele count: 2
allele frequency: 1.735628991946682e-5
allele num: 115232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-54T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-54T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-26-33T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.74T>G
  hgvsp: ENSP00000362658.2:p.Val25Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-6+45T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-54T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.74T>G
  hgvsp: ENSP00000436554.1:p.Val25Gly
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-54T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-54T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-6+45T>G
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-54T>G
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val25Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-32739877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739877
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739877
    reference: chr 1
allele count: 1
allele frequency: 8.532714427113554e-6
allele num: 117196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.79G>A
  hgvsp: ENSP00000362658.2:p.Gly27Arg
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-5-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-5-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.79G>A
  hgvsp: ENSP00000436554.1:p.Gly27Arg
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-49G>A
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-26-28G>A
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly27Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-32739885-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739885
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739885
    reference: chr 1
allele count: 1
allele frequency: 8.4088730428348e-6
allele num: 118922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-5-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-26-20T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-5-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.87T>C
  hgvsp: ENST00000373557.2:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.87T>C
  hgvsp: ENST00000477031.2:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-41T>C
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-41T>C
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp29Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-32739898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32739898
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32739898
    reference: chr 1
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000435605
  ensembl transcript: ENST00000495610
  gene symbol: LCK
  hgvsc: ENST00000495610.2:c.-5-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000431517
  ensembl transcript: ENST00000482949
  gene symbol: LCK
  hgvsc: ENST00000482949.1:c.-5-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362663
  ensembl transcript: ENST00000373562
  gene symbol: LCK
  hgvsc: ENST00000373562.3:c.-26-7C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000436554
  ensembl transcript: ENST00000477031
  gene symbol: LCK
  hgvsc: ENST00000477031.2:c.100C>T
  hgvsp: ENSP00000436554.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000434525
  ensembl transcript: ENST00000461712
  gene symbol: LCK
  hgvsc: ENST00000461712.2:c.-5-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000355928
  gene symbol: LCK
  hgvsc: ENST00000355928.3:n.98-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000337825
  ensembl transcript: ENST00000336890
  gene symbol: LCK
  hgvsc: ENST00000336890.5:c.-5-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000362658
  ensembl transcript: ENST00000373557
  gene symbol: LCK
  hgvsc: ENST00000373557.2:c.100C>T
  hgvsp: ENSP00000362658.2:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000476457
  gene symbol: LCK
  hgvsc: ENST00000476457.1:n.75-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl protein: ENSP00000328213
  ensembl transcript: ENST00000333070
  gene symbol: LCK
  hgvsc: ENST00000333070.4:c.-5-28C>T
  variant of: http://identifiers.org/hgnc/6524
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182866
  ensembl transcript: ENST00000469765
  gene symbol: LCK
  hgvsc: ENST00000469765.1:n.55-28C>T
  variant of: http://identifiers.org/hgnc/6524
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro34Ser
num of homozygotes: 0
reference allele: C

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.2237046920169e-4
allele num: 8994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

DP
type: SiteQuality
SIO_000300: 2.142561e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

FS
type: SiteQuality
SIO_000300: 1.4513e1

QD
type: SiteQuality
SIO_000300: 7.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609632038116087e-5
allele num: 62126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.074e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 2.138904e6

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

Latino
type: Population
allele count: 2
allele frequency: 1.749475157452764e-4
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.546072974644403e-4
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 9.829514325308583e-4
allele num: 62058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e0

DP
type: SiteQuality
SIO_000300: 2.133125e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11781801922647e-4
allele num: 8946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

DP
type: SiteQuality
SIO_000300: 2.124275e6

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

QD
type: SiteQuality
SIO_000300: 9.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.423e0

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.322e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.120958e6

QD
type: SiteQuality
SIO_000300: 1.083e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.384e0

MQ
type: SiteQuality
SIO_000300: 5.668e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.502e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 2.11456e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.971e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 2.04965e5

QD
type: SiteQuality
SIO_000300: 1.044e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

East Asian
type: Population
allele count: 3
allele frequency: 1.19047619047619e-2
allele num: 252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.1415e5

QD
type: SiteQuality
SIO_000300: 1.285e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.012841091492777e-4
allele num: 2492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.63157e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

DP
type: SiteQuality
SIO_000300: 3.39814e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

VQSLOD
type: SiteQuality
SIO_000300: -2.476e0

QD
type: SiteQuality
SIO_000300: 7.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 7
allele frequency: 1.328273244781784e-3
allele num: 5270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.373626373626374e-4
allele num: 7280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

FS
type: SiteQuality
SIO_000300: 1.0395e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 3.94945e5

VQSLOD
type: SiteQuality
SIO_000300: -9.435e-1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.457725947521866e-4
allele num: 6860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 4.68433e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.274e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

African
type: Population
allele count: 2
allele frequency: 9.514747859181732e-4
allele num: 2102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.576e0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.58337e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17054
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.191895113230036e-4
allele num: 8390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.104e0

DP
type: SiteQuality
SIO_000300: 5.67857e5

VQSLOD
type: SiteQuality
SIO_000300: -1.917e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.384e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.80695e5

QD
type: SiteQuality
SIO_000300: 1.747e1

VQSLOD
type: SiteQuality
SIO_000300: -1.244e0

MQRankSum
type: SiteQuality
SIO_000300: -1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

DP
type: SiteQuality
SIO_000300: 6.22972e5

QD
type: SiteQuality
SIO_000300: 1.125e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 7.102e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22082
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.088850174216028e-4
allele num: 9184
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 6.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

FS
type: SiteQuality
SIO_000300: 3.081e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 6.42782e5

Latino
type: Population
allele count: 30
allele frequency: 1.344086021505376e-2
allele num: 2232
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 4.469987228607918e-3
allele num: 3132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.587991718426501e-4
allele num: 3864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 2.521008403361345e-2
allele num: 1190
num of homozygotes: 0

South Asian
type: Population
allele count: 294
allele frequency: 2.941176470588235e-2
allele num: 9996
num of homozygotes: 5

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

QD
type: SiteQuality
SIO_000300: 1.139e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

DP
type: SiteQuality
SIO_000300: 7.17609e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.904e1

DP
type: SiteQuality
SIO_000300: 7.88933e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 2.488e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.725088470851183e-4
allele num: 10738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3824
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

FS
type: SiteQuality
SIO_000300: 1.458e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.03513e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.680527152919791e-5
allele num: 35208
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 8.26251e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.312649418264889e-5
allele num: 37646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

DP
type: SiteQuality
SIO_000300: 8.62748e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.589e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 8.80038e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.196e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

QD
type: SiteQuality
SIO_000300: 3.022e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39026
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.65158211065936e-4
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

FS
type: SiteQuality
SIO_000300: 1.1429e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 8.86412e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40032
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African
type: Population
allele count: 9
allele frequency: 1.864125932062966e-3
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 9.00724e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
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African
type: Population
allele count: 20
allele frequency: 4.123711340206186e-3
allele num: 4850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.500625156289072e-5
allele num: 39990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.751e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

DP
type: SiteQuality
SIO_000300: 8.98533e5

South Asian
type: Population
allele count: 1
allele frequency: 8.80126738250308e-5
allele num: 11362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.556237218813906e-4
allele num: 39120
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.365e1

FS
type: SiteQuality
SIO_000300: 3.826e0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 8.68749e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.882530120481928e-4
allele num: 5312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.852691218130312e-5
allele num: 11296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 8.53371e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 2.078137988362427e-3
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 8.44589e5

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 9.689922480620155e-4
allele num: 2064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

DP
type: SiteQuality
SIO_000300: 7.6588e5

FS
type: SiteQuality
SIO_000300: 3.151e0

QD
type: SiteQuality
SIO_000300: 1.304e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.238761497603316e-5
allele num: 30876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.086e0

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

QD
type: SiteQuality
SIO_000300: 2.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

FS
type: SiteQuality
SIO_000300: 1.755e0

DP
type: SiteQuality
SIO_000300: 6.86627e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.90015600624025e-4
allele num: 10256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.482136639041716e-5
allele num: 28718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.529e1

FS
type: SiteQuality
SIO_000300: 2.088e0

QD
type: SiteQuality
SIO_000300: 1.052e1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 6.48179e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.529e1

QD
type: SiteQuality
SIO_000300: 1.052e1

DP
type: SiteQuality
SIO_000300: 6.48179e5

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-2

FS
type: SiteQuality
SIO_000300: 2.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

South Asian
type: Population
allele count: 1
allele frequency: 1.062022090059473e-4
allele num: 9416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 5.5804e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.842e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.058e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

VQSLOD
type: SiteQuality
SIO_000300: -9.225e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 4.96665e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 9.45179584120983e-4
allele num: 2116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 4.66678e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 2.062e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

VQSLOD
type: SiteQuality
SIO_000300: -2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.69e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.655e-1

FS
type: SiteQuality
SIO_000300: 6.131e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

DP
type: SiteQuality
SIO_000300: 4.57187e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.45387e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.449e0

DP
type: SiteQuality
SIO_000300: 3.90791e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.854e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.074e1

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

DP
type: SiteQuality
SIO_000300: 3.39388e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304121022430882e-4
allele num: 7668
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

DP
type: SiteQuality
SIO_000300: 3.14574e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.629e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

QD
type: SiteQuality
SIO_000300: 1.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 1.08695652173913e-3
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
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VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 2.74942e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.194e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.610419548178884e-4
allele num: 4338
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.52854e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.167e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
type: Population
allele count: 0
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South Asian
type: Population
allele count: 1
allele frequency: 1.463271875914545e-4
allele num: 6834
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
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VQSLOD
type: SiteQuality
SIO_000300: -5.723e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

DP
type: SiteQuality
SIO_000300: 2.2969e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 6.907894736842106e-2
allele num: 912
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South Asian
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East Asian
type: Population
allele count: 0
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Other
type: Population
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allele num: 120
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 3.324e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.75e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.13685e5

African
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allele count: 0
allele frequency: 0.0e0
allele num: 754
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.248862897985705e-4
allele num: 3078
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 230
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Latino
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allele num: 158
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MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -1.849e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

QD
type: SiteQuality
SIO_000300: 1.065e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.507e5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
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South Asian
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allele count: 1
allele frequency: 2.665245202558635e-4
allele num: 3752
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 144
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

VQSLOD
type: SiteQuality
SIO_000300: -2.285e0

DP
type: SiteQuality
SIO_000300: 1.30019e5

QD
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.237e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

European (Non-Finnish)
type: Population
allele count: 0
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South Asian
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allele count: 1
allele frequency: 2.723311546840959e-4
allele num: 3672
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 628
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VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.27e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

DP
type: SiteQuality
SIO_000300: 1.26884e5

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.587301587301587e-3
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.501e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.637e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 1.26516e5

QD
type: SiteQuality
SIO_000300: 4.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.22e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.26273e5

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.123048094940662e-4
allele num: 3202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.39e-2

DP
type: SiteQuality
SIO_000300: 1.19829e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -2.248e0

QD
type: SiteQuality
SIO_000300: 4.12e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.06e-2

DP
type: SiteQuality
SIO_000300: 9.9511e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 1.693e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.226e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.11e-2

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 9.8842e4

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

DP
type: SiteQuality
SIO_000300: 2.00613e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.46e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4488
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.04448e5

QD
type: SiteQuality
SIO_000300: 1.628e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.857e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
all individuals: 540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2244
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3429
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 14856
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 528
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.383458646616541e-3
allele num: 2660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.293e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 4.372e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 2.58854e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 6.75e1
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GenotypeQuality
all individuals: 2700
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.345794392523365e-4
allele num: 1070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 3.52186e5

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -4.425e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 291
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1190
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.369e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

MQ
type: SiteQuality
SIO_000300: 5.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

QD
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.522e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

DP
type: SiteQuality
SIO_000300: 3.76867e5

GenotypeQuality
all individuals: 82
bin: 6.75e1
variant carriers: 14

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 24

GenotypeQuality
all individuals: 26
bin: 8.25e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 24

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 106
bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 31

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 19

GenotypeQuality
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bin: 3.75e1
variant carriers: 31

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 27

GenotypeQuality
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bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 643
bin: 3.25e1
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GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 22

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 25

Latino
type: Population
allele count: 13
allele frequency: 3.631284916201118e-2
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.578947368421052e-3
allele num: 1520
num of homozygotes: 0

East Asian
type: Population
allele count: 34
allele frequency: 8.854166666666667e-2
allele num: 384
num of homozygotes: 0

European (Finnish)
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allele count: 29
allele frequency: 1.082089552238806e-1
allele num: 268
num of homozygotes: 0

African
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allele count: 43
allele frequency: 4.673913043478261e-2
allele num: 920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 117
allele frequency: 3.078947368421053e-2
allele num: 3800
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.333333333333333e-2
allele num: 60
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.95274e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
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SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 3.4216e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
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SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.45e0

VQSLOD
type: SiteQuality
SIO_000300: -4.172e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

QD
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DP
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -7.36e-1

InbreedingCoeff
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SIO_000300: 3.04e-2

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

African
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allele count: 1
allele frequency: 4.897159647404506e-4
allele num: 2042
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
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SIO_000300: -3.58e-1

InbreedingCoeff
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SIO_000300: 3.04e-2

QD
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MQRankSum
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SIO_000300: -1.34e-1

BaseQRankSum
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SIO_000300: -7.36e-1

DP
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SIO_000300: 4.19778e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.45e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.644736842105263e-3
allele num: 1216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.660989888238425e-4
allele num: 3758
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.847380410022779e-4
allele num: 10536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 7.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.759e-1

FS
type: SiteQuality
SIO_000300: 7.013e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.44188e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.801529099703542e-5
allele num: 12818
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

FS
type: SiteQuality
SIO_000300: 3.424e0

DP
type: SiteQuality
SIO_000300: 4.86145e5

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.55e-2

MQRankSum
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ReadPosRankSum
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SIO_000300: 8.100000000000001e-1

VQSLOD
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ClippingRankSum
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SIO_000300: -1.504e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.405405405405405e-4
allele num: 1850
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2420
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 2272
num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.100473203477495e-4
allele num: 18174
num of homozygotes: 0

Other
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BaseQRankSum
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MQ
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QD
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.384042086804034e-5
allele num: 22810
num of homozygotes: 0

Other
type: Population
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allele num: 344
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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FS
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

QD
type: SiteQuality
SIO_000300: 1.306e1

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

DP
type: SiteQuality
SIO_000300: 6.64561e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.897723729342064e-5
allele num: 25656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

FS
type: SiteQuality
SIO_000300: 3.485e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.601e0

DP
type: SiteQuality
SIO_000300: 6.88995e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.106e1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.963303391128752e-5
allele num: 28722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.102e1

ReadPosRankSum
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -9.299999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 7.37178e5

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 26

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 4.887585532746823e-3
allele num: 4092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.838122664052448e-4
allele num: 32642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.98271e5

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.54e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585238261310675e-5
allele num: 63082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
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SIO_000300: 5.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.904e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.793e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.954154727793696e-5
allele num: 11168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585238261310675e-5
allele num: 63082
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.32549e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.200396825396825e-5
allele num: 16128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64248
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
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East Asian
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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FS
type: SiteQuality
SIO_000300: 9.688000000000001e0

BaseQRankSum
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QD
type: SiteQuality
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 81
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.0e-4
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.367744e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.393e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.99e0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0