16-76587255-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587255
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587255
    reference: chr 16
allele count: 1
allele frequency: 8.997660608241856e-6
allele num: 111140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3373T>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3902T>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3371T>A
  hgvsp: ENSP00000439733.1:p.Leu1124His
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3527T>A
  hgvsp: ENSP00000417628.1:p.Leu1176His
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3515T>A
  hgvsp: ENSP00000306893.8:p.Leu1172His
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3299T>A
  hgvsp: ENSP00000418741.1:p.Leu1100His
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4069
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1100His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-76587261-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587261
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587261
    reference: chr 16
allele count: 1
allele frequency: 8.994261661060243e-6
allele num: 111182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3908A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3305A>C
  hgvsp: ENSP00000418741.1:p.His1102Pro
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3521A>C
  hgvsp: ENSP00000306893.8:p.His1174Pro
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3533A>C
  hgvsp: ENSP00000417628.1:p.His1178Pro
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3379A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3377A>C
  hgvsp: ENSP00000439733.1:p.His1126Pro
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His1102Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-76587262-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587262
    reference: chr 16
allele count: 1
allele frequency: 9.013231423730036e-6
allele num: 110948
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3306C>A
  hgvsp: ENSP00000418741.1:p.His1102Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3909C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3378C>A
  hgvsp: ENSP00000439733.1:p.His1126Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3534C>A
  hgvsp: ENSP00000417628.1:p.His1178Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3522C>A
  hgvsp: ENSP00000306893.8:p.His1174Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3380C>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21517
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His1102Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-76587262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587262
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587262
    reference: chr 16
allele count: 6
allele frequency: 5.407938854238022e-5
allele num: 110948
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3306C>T
  hgvsp: ENST00000478060.1:c.3306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3380C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3909C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3522C>T
  hgvsp: ENST00000307431.8:c.3522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3378C>T
  hgvsp: ENST00000377504.4:c.3378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3534C>T
  hgvsp: ENST00000476707.1:c.3534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21517
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His1102His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-76587263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587263
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587263
    reference: chr 16
allele count: 2
allele frequency: 1.802288906911778e-5
allele num: 110970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3523G>A
  hgvsp: ENSP00000306893.8:p.Val1175Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3307G>A
  hgvsp: ENSP00000418741.1:p.Val1103Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3535G>A
  hgvsp: ENSP00000417628.1:p.Val1179Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3381G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3910G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3379G>A
  hgvsp: ENSP00000439733.1:p.Val1127Met
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25192
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val1103Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

16-76587266-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587266
    reference: chr 16
allele count: 1
allele frequency: 9.01648212933242e-6
allele num: 110908
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3310G>T
  hgvsp: ENSP00000418741.1:p.Ala1104Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3913G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3382G>T
  hgvsp: ENSP00000439733.1:p.Ala1128Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3538G>T
  hgvsp: ENSP00000417628.1:p.Ala1180Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3526G>T
  hgvsp: ENSP00000306893.8:p.Ala1176Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3384G>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21773
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1104Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

16-76587269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587269
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587269
    reference: chr 16
allele count: 1
allele frequency: 9.00835975785529e-6
allele num: 111008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3385C>G
  hgvsp: ENSP00000439733.1:p.Pro1129Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3529C>G
  hgvsp: ENSP00000306893.8:p.Pro1177Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3313C>G
  hgvsp: ENSP00000418741.1:p.Pro1105Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3541C>G
  hgvsp: ENSP00000417628.1:p.Pro1181Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3387C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3916C>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1105Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-76587278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587278
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587278
    reference: chr 16
allele count: 2
allele frequency: 1.804142310745472e-5
allele num: 110856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3394G>A
  hgvsp: ENSP00000439733.1:p.Ala1132Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3538G>A
  hgvsp: ENSP00000306893.8:p.Ala1180Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3550G>A
  hgvsp: ENSP00000417628.1:p.Ala1184Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3396G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3925G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3322G>A
  hgvsp: ENSP00000418741.1:p.Ala1108Thr
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21132
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1108Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-76587279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587279
    reference: chr 16
allele count: 2
allele frequency: 1.804826105004783e-5
allele num: 110814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3926C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3323C>T
  hgvsp: ENSP00000418741.1:p.Ala1108Val
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3551C>T
  hgvsp: ENSP00000417628.1:p.Ala1184Val
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3395C>T
  hgvsp: ENSP00000439733.1:p.Ala1132Val
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3539C>T
  hgvsp: ENSP00000306893.8:p.Ala1180Val
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3397C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1108Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-76587288-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587288
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587288
    reference: chr 16
allele count: 1
allele frequency: 9.061089867889309e-6
allele num: 110362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3332A>T
  hgvsp: ENSP00000418741.1:p.His1111Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3935A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3404A>T
  hgvsp: ENSP00000439733.1:p.His1135Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3548A>T
  hgvsp: ENSP00000306893.8:p.His1183Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3560A>T
  hgvsp: ENSP00000417628.1:p.His1187Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3406A>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His1111Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-76587290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587290
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587290
    reference: chr 16
allele count: 4
allele frequency: 3.622794623772778e-5
allele num: 110412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3408C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3334C>A
  hgvsp: ENSP00000418741.1:p.Pro1112Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3406C>A
  hgvsp: ENSP00000439733.1:p.Pro1136Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3550C>A
  hgvsp: ENSP00000306893.8:p.Pro1184Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3937C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3562C>A
  hgvsp: ENSP00000417628.1:p.Pro1188Thr
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1112Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

16-76587290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587290
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587290
    reference: chr 16
allele count: 4
allele frequency: 3.622794623772778e-5
allele num: 110412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3937C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3408C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3406C>T
  hgvsp: ENSP00000439733.1:p.Pro1136Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3334C>T
  hgvsp: ENSP00000418741.1:p.Pro1112Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3562C>T
  hgvsp: ENSP00000417628.1:p.Pro1188Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3550C>T
  hgvsp: ENSP00000306893.8:p.Pro1184Ser
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20034
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro1112Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-76587298-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587298
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587298
    reference: chr 16
allele count: 1
allele frequency: 9.043553754883519e-6
allele num: 110576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3945C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3416C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3570C>A
  hgvsp: ENSP00000417628.1:p.His1190Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3414C>A
  hgvsp: ENSP00000439733.1:p.His1138Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3342C>A
  hgvsp: ENSP00000418741.1:p.His1114Gln
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3558C>A
  hgvsp: ENSP00000306893.8:p.His1186Gln
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His1114Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

16-76587303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587303
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587303
    reference: chr 16
allele count: 1
allele frequency: 9.046826373308244e-6
allele num: 110536
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3347A>G
  hgvsp: ENSP00000418741.1:p.Asp1116Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3575A>G
  hgvsp: ENSP00000417628.1:p.Asp1192Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3950A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3563A>G
  hgvsp: ENSP00000306893.8:p.Asp1188Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3421A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3419A>G
  hgvsp: ENSP00000439733.1:p.Asp1140Gly
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp1116Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-76587304-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587304
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587304
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 110546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3420C>A
  hgvsp: ENSP00000439733.1:p.Asp1140Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3951C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3576C>A
  hgvsp: ENSP00000417628.1:p.Asp1192Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3422C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3348C>A
  hgvsp: ENSP00000418741.1:p.Asp1116Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3564C>A
  hgvsp: ENSP00000306893.8:p.Asp1188Glu
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8836
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp1116Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-76587305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587305
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587305
    reference: chr 16
allele count: 1
allele frequency: 9.052886965653346e-6
allele num: 110462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3577C>G
  hgvsp: ENSP00000417628.1:p.Pro1193Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3952C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3349C>G
  hgvsp: ENSP00000418741.1:p.Pro1117Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3421C>G
  hgvsp: ENSP00000439733.1:p.Pro1141Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3423C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3565C>G
  hgvsp: ENSP00000306893.8:p.Pro1189Ala
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21913
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1117Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-76587318-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587318
    reference: chr 16
allele count: 9
allele frequency: 8.141996417521577e-5
allele num: 110538
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3362C>G
  hgvsp: ENSP00000418741.1:p.Thr1121Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3965C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3590C>G
  hgvsp: ENSP00000417628.1:p.Thr1197Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3434C>G
  hgvsp: ENSP00000439733.1:p.Thr1145Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3436C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.5C>G
  hgvsp: ENSP00000455258.1:p.Thr2Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3578C>G
  hgvsp: ENSP00000306893.8:p.Thr1193Arg
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23612
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1121Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

16-76587318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587318
    reference: chr 16
allele count: 2
allele frequency: 1.809332537227017e-5
allele num: 110538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3434C>T
  hgvsp: ENSP00000439733.1:p.Thr1145Ile
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3965C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.5C>T
  hgvsp: ENSP00000455258.1:p.Thr2Ile
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3578C>T
  hgvsp: ENSP00000306893.8:p.Thr1193Ile
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3362C>T
  hgvsp: ENSP00000418741.1:p.Thr1121Ile
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3590C>T
  hgvsp: ENSP00000417628.1:p.Thr1197Ile
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3436C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1121Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-76587319-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587319
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587319
    reference: chr 16
allele count: 1
allele frequency: 9.051084319901523e-6
allele num: 110484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3591A>C
  hgvsp: ENST00000476707.1:c.3591A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3579A>C
  hgvsp: ENST00000307431.8:c.3579A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3437A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3435A>C
  hgvsp: ENST00000377504.4:c.3435A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3363A>C
  hgvsp: ENST00000478060.1:c.3363A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3966A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.6A>C
  hgvsp: ENST00000563764.1:c.6A>C(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr1121Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

16-76587323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587323
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587323
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 110664
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.10C>T
  hgvsp: ENSP00000455258.1:p.His4Tyr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3441C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3583C>T
  hgvsp: ENSP00000306893.8:p.His1195Tyr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3439C>T
  hgvsp: ENSP00000439733.1:p.His1147Tyr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3595C>T
  hgvsp: ENSP00000417628.1:p.His1199Tyr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3367C>T
  hgvsp: ENSP00000418741.1:p.His1123Tyr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3970C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His1123Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-76587325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587325
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587325
    reference: chr 16
allele count: 407
allele frequency: 3.679328861487281e-3
allele num: 110618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3585C>T
  hgvsp: ENST00000307431.8:c.3585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3443C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.12C>T
  hgvsp: ENST00000563764.1:c.12C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3597C>T
  hgvsp: ENST00000476707.1:c.3597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3441C>T
  hgvsp: ENST00000377504.4:c.3441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3972C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3369C>T
  hgvsp: ENST00000478060.1:c.3369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 1.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 24366
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7414
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3462
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27300
  bin: 6.25e1
  variant carriers: 2
hgvs: p.His1123His
num of homozygotes: 5
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

16-76587326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587326
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587326
    reference: chr 16
allele count: 11
allele frequency: 9.940178200285554e-5
allele num: 110662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3442G>A
  hgvsp: ENSP00000439733.1:p.Val1148Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3973G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3444G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3586G>A
  hgvsp: ENSP00000306893.8:p.Val1196Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.13G>A
  hgvsp: ENSP00000455258.1:p.Val5Met
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3370G>A
  hgvsp: ENSP00000418741.1:p.Val1124Met
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3598G>A
  hgvsp: ENSP00000417628.1:p.Val1200Met
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24650
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val1124Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-76587326-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587326
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587326
    reference: chr 16
allele count: 1
allele frequency: 9.036525636623232e-6
allele num: 110662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3598G>T
  hgvsp: ENSP00000417628.1:p.Val1200Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3973G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3370G>T
  hgvsp: ENSP00000418741.1:p.Val1124Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3586G>T
  hgvsp: ENSP00000306893.8:p.Val1196Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3442G>T
  hgvsp: ENSP00000439733.1:p.Val1148Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.13G>T
  hgvsp: ENSP00000455258.1:p.Val5Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3444G>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val1124Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-76587331-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587331
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587331
    reference: chr 16
allele count: 34188
allele frequency: 3.061520551625325e-1
allele num: 111670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3447T>C
  hgvsp: ENST00000377504.4:c.3447T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3375T>C
  hgvsp: ENST00000478060.1:c.3375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3603T>C
  hgvsp: ENST00000476707.1:c.3603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3449T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.18T>C
  hgvsp: ENST00000563764.1:c.18T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3591T>C
  hgvsp: ENST00000307431.8:c.3591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3978T>C
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.25e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 2.75e1
  variant carriers: 4726
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 525
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.5e0
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 9.75e1
  variant carriers: 1418
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 3241
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 469
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 1781
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 1.25e1
  variant carriers: 2308
genotype depth: GenotypeDepth
  all individuals: 19932
  bin: 2.25e1
  variant carriers: 5570
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 1.75e1
  variant carriers: 4644
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 983
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.25e1
  variant carriers: 474
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 6.75e1
  variant carriers: 427
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 5.75e1
  variant carriers: 283
hgvs: p.Thr1125Thr
num of homozygotes: 5108
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

16-76587332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587332
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587332
    reference: chr 16
allele count: 10
allele frequency: 9.296272194849865e-5
allele num: 107570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3604G>A
  hgvsp: ENSP00000417628.1:p.Glu1202Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3450G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3448G>A
  hgvsp: ENSP00000439733.1:p.Glu1150Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3376G>A
  hgvsp: ENSP00000418741.1:p.Glu1126Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3592G>A
  hgvsp: ENSP00000306893.8:p.Glu1198Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3979G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.19G>A
  hgvsp: ENSP00000455258.1:p.Glu7Lys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22944
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu1126Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

16-76587334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587334
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587334
    reference: chr 16
allele count: 24
allele frequency: 2.23181074244904e-4
allele num: 107536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3594G>A
  hgvsp: ENST00000307431.8:c.3594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3981G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3606G>A
  hgvsp: ENST00000476707.1:c.3606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3450G>A
  hgvsp: ENST00000377504.4:c.3450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3378G>A
  hgvsp: ENST00000478060.1:c.3378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.21G>A
  hgvsp: ENST00000563764.1:c.21G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3452G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23222
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31952
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu1126Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-76587334-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587334
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587334
    reference: chr 16
allele count: 2
allele frequency: 1.8598422853742e-5
allele num: 107536
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.21G>C
  hgvsp: ENSP00000455258.1:p.Glu7Asp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3450G>C
  hgvsp: ENSP00000439733.1:p.Glu1150Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3452G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3981G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3606G>C
  hgvsp: ENSP00000417628.1:p.Glu1202Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3594G>C
  hgvsp: ENSP00000306893.8:p.Glu1198Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3378G>C
  hgvsp: ENSP00000418741.1:p.Glu1126Asp
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1126Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

16-76587339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587339
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587339
    reference: chr 16
allele count: 3
allele frequency: 2.805888624927514e-5
allele num: 106918
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3383G>A
  hgvsp: ENSP00000418741.1:p.Ser1128Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3611G>A
  hgvsp: ENSP00000417628.1:p.Ser1204Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.26G>A
  hgvsp: ENSP00000455258.1:p.Ser9Asn
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3599G>A
  hgvsp: ENSP00000306893.8:p.Ser1200Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3986G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3455G>A
  hgvsp: ENSP00000439733.1:p.Ser1152Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3457G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1128Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-76587348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587348
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587348
    reference: chr 16
allele count: 1
allele frequency: 9.485326200368031e-6
allele num: 105426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3464C>G
  hgvsp: ENSP00000439733.1:p.Ala1155Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3392C>G
  hgvsp: ENSP00000418741.1:p.Ala1131Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3620C>G
  hgvsp: ENSP00000417628.1:p.Ala1207Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3608C>G
  hgvsp: ENSP00000306893.8:p.Ala1203Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3466C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3995C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.35C>G
  hgvsp: ENSP00000455258.1:p.Ala12Gly
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1131Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

16-76587349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587349
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587349
    reference: chr 16
allele count: 56
allele frequency: 5.310271582460932e-4
allele num: 105456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3609C>T
  hgvsp: ENST00000307431.8:c.3609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3996C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3465C>T
  hgvsp: ENST00000377504.4:c.3465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3393C>T
  hgvsp: ENST00000478060.1:c.3393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3621C>T
  hgvsp: ENST00000476707.1:c.3621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3467C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.36C>T
  hgvsp: ENST00000563764.1:c.36C>T(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23424
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32912
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1131Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-76587350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587350
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587350
    reference: chr 16
allele count: 1
allele frequency: 9.510766187324051e-6
allele num: 105144
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.37C>T
  hgvsp: ENSP00000455258.1:p.Gln13Ter
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3468C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3610C>T
  hgvsp: ENSP00000306893.8:p.Gln1204Ter
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3394C>T
  hgvsp: ENSP00000418741.1:p.Gln1132Ter
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3466C>T
  hgvsp: ENSP00000439733.1:p.Gln1156Ter
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3622C>T
  hgvsp: ENSP00000417628.1:p.Gln1208Ter
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3997C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1132Ter
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-76587352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587352
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587352
    reference: chr 16
allele count: 1
allele frequency: 9.546903939052565e-6
allele num: 104746
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.39G>A
  hgvsp: ENST00000563764.1:c.39G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3470G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.3999G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3468G>A
  hgvsp: ENST00000377504.4:c.3468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3396G>A
  hgvsp: ENST00000478060.1:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3624G>A
  hgvsp: ENST00000476707.1:c.3624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3612G>A
  hgvsp: ENST00000307431.8:c.3612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23186
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln1132Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

16-76587357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587357
    reference: chr 16
allele count: 2
allele frequency: 1.923409820930546e-5
allele num: 103982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3617G>A
  hgvsp: ENSP00000306893.8:p.Gly1206Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3475G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3473G>A
  hgvsp: ENSP00000439733.1:p.Gly1158Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.44G>A
  hgvsp: ENSP00000455258.1:p.Gly15Asp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3629G>A
  hgvsp: ENSP00000417628.1:p.Gly1210Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4004G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3401G>A
  hgvsp: ENSP00000418741.1:p.Gly1134Asp
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly15Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-76587357-GCAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587357
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587354
    reference: chr 16
allele count: 1
allele frequency: 9.617049104652728e-6
allele num: 103982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3476_3478delCAC
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3618_3620delCAC
  hgvsp: ENSP00000306893.8:p.Thr1207del
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3630_3632delCAC
  hgvsp: ENSP00000417628.1:p.Thr1211del
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3474_3476delCAC
  hgvsp: ENSP00000439733.1:p.Thr1159del
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4005_4007delCAC
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.45_47delCAC
  hgvsp: ENSP00000455258.1:p.Thr16del
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3402_3404delCAC
  hgvsp: ENSP00000418741.1:p.Thr1135del
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1135del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: GCAC
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

16-76587364-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587364
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587364
    reference: chr 16
allele count: 1
allele frequency: 9.741271820448878e-6
allele num: 102656
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3408T>G
  hgvsp: ENSP00000418741.1:p.Asp1136Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3636T>G
  hgvsp: ENSP00000417628.1:p.Asp1212Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3624T>G
  hgvsp: ENSP00000306893.8:p.Asp1208Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3482T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3480T>G
  hgvsp: ENSP00000439733.1:p.Asp1160Glu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4011T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.51T>G
  hgvsp: ENSP00000455258.1:p.Asp17Glu
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22853
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp1136Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

16-76587365-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587365
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587365
    reference: chr 16
allele count: 1
allele frequency: 9.787800485474904e-6
allele num: 102168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4012G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.52G>T
  hgvsp: ENSP00000455258.1:p.Ala18Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3409G>T
  hgvsp: ENSP00000418741.1:p.Ala1137Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3481G>T
  hgvsp: ENSP00000439733.1:p.Ala1161Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3483G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3625G>T
  hgvsp: ENSP00000306893.8:p.Ala1209Ser
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3637G>T
  hgvsp: ENSP00000417628.1:p.Ala1213Ser
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31972
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1137Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-76587367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587367
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587367
    reference: chr 16
allele count: 1
allele frequency: 9.834002045472425e-6
allele num: 101688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.54C>T
  hgvsp: ENST00000563764.1:c.54C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3411C>T
  hgvsp: ENST00000478060.1:c.3411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3483C>T
  hgvsp: ENST00000377504.4:c.3483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4014C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3485C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3627C>T
  hgvsp: ENST00000307431.8:c.3627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3639C>T
  hgvsp: ENST00000476707.1:c.3639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala1137Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

16-76587376-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587376
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587376
    reference: chr 16
allele count: 1
allele frequency: 1.011961383553604e-5
allele num: 98818
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3420G>A
  hgvsp: ENST00000478060.1:c.3420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3494G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3636G>A
  hgvsp: ENST00000307431.8:c.3636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3492G>A
  hgvsp: ENST00000377504.4:c.3492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.63G>A
  hgvsp: ENST00000563764.1:c.63G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4023G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3648G>A
  hgvsp: ENST00000476707.1:c.3648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1140Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-76587382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587382
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587382
    reference: chr 16
allele count: 1
allele frequency: 1.048657718120805e-5
allele num: 95360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3654G>A
  hgvsp: ENST00000476707.1:c.3654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.69G>A
  hgvsp: ENST00000563764.1:c.69G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3498G>A
  hgvsp: ENST00000377504.4:c.3498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3426G>A
  hgvsp: ENST00000478060.1:c.3426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3642G>A
  hgvsp: ENST00000307431.8:c.3642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3500G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4029G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1142Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

16-76587385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587385
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587385
    reference: chr 16
allele count: 1
allele frequency: 1.071443877769683e-5
allele num: 93332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.72A>G
  hgvsp: ENST00000563764.1:c.72A>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3429A>G
  hgvsp: ENST00000478060.1:c.3429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3501A>G
  hgvsp: ENST00000377504.4:c.3501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3657A>G
  hgvsp: ENST00000476707.1:c.3657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3503A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3645A>G
  hgvsp: ENST00000307431.8:c.3645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4032A>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1143Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

16-76587390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587390
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587390
    reference: chr 16
allele count: 4
allele frequency: 4.438427908834691e-5
allele num: 90122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3508C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4037C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3650C>T
  hgvsp: ENSP00000306893.8:p.Ser1217Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3434C>T
  hgvsp: ENSP00000418741.1:p.Ser1145Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.77C>T
  hgvsp: ENSP00000455258.1:p.Ser26Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3662C>T
  hgvsp: ENSP00000417628.1:p.Ser1221Leu
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3506C>T
  hgvsp: ENSP00000439733.1:p.Ser1169Leu
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1145Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

16-76587391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587391
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587391
    reference: chr 16
allele count: 10
allele frequency: 1.127014538487546e-4
allele num: 88730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3663G>A
  hgvsp: ENST00000476707.1:c.3663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3651G>A
  hgvsp: ENST00000307431.8:c.3651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4038G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3507G>A
  hgvsp: ENST00000377504.4:c.3507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3435G>A
  hgvsp: ENST00000478060.1:c.3435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.78G>A
  hgvsp: ENST00000563764.1:c.78G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3509G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1145Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-76587403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587403
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587403
    reference: chr 16
allele count: 25
allele frequency: 3.09666551057821e-4
allele num: 80732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+5C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+5C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+5C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+5C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+5C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+5C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+5C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17169
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20241
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 3.25e1
  variant carriers: 0
hgvs: c.85+5C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

16-76587404-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587404
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587404
    reference: chr 16
allele count: 2
allele frequency: 2.478314745972738e-5
allele num: 80700
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+6T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+6T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+6T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+6T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+6T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+6T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+6T>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
hgvs: c.85+6T>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS

16-76587407-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587407
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587407
    reference: chr 16
allele count: 1
allele frequency: 1.258114840722661e-5
allele num: 79484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+9G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+9G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+9G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+9G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+9G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+9G>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+9G>C
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

16-76587407-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587407
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587407
    reference: chr 16
allele count: 3
allele frequency: 3.774344522167984e-5
allele num: 79484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+9G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+9G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+9G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+9G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+9G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+9G>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+9G>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-76587409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587409
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587409
    reference: chr 16
allele count: 755
allele frequency: 9.646836348768272e-3
allele num: 78264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+11G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+11G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 21531
  bin: 1.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 17825
  bin: 7.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 2.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 2.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 9.75e1
  variant carriers: 722
genotype quality: GenotypeQuality
  all individuals: 31916
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.25e1
  variant carriers: 9
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-76587416-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587416
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587416
    reference: chr 16
allele count: 1
allele frequency: 1.365150439578442e-5
allele num: 73252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+18C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+18C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+18C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+18C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+18C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+18C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+18C>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

16-76587421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587421
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587421
    reference: chr 16
allele count: 2
allele frequency: 2.871170576243935e-5
allele num: 69658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+23C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+23C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+23C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+23C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+23C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+23C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+23C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22537
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

16-76587429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587429
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587429
    reference: chr 16
allele count: 1
allele frequency: 1.613892385655725e-5
allele num: 61962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+31C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+31C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+31C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+31C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+31C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+31C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+31C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20509
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

16-76587433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587433
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587433
    reference: chr 16
allele count: 4
allele frequency: 7.158196134574088e-5
allele num: 55880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+35C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+35C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+35C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+35C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+35C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+35C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+35C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18093
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10937
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

16-76587434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587434
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587434
    reference: chr 16
allele count: 1
allele frequency: 1.79230741656809e-5
allele num: 55794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3658+36G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3442+36G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4045+36G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3670+36G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.85+36G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3516+36G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3514+36G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-76587689-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587689
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587689
    reference: chr 16
allele count: 4
allele frequency: 4.090063191476308e-5
allele num: 97798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-44A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-44A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-44A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-44A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-44A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-44A>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-44A>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7518
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-76587690-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587690
    reference: chr 16
allele count: 16
allele frequency: 1.631853785900783e-4
allele num: 98048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-43C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-43C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-43C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-43C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-43C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-43C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-43C>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14490
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

16-76587693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587693
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587693
    reference: chr 16
allele count: 3
allele frequency: 3.04989630352568e-5
allele num: 98364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-40G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-40G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-40G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-40G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-40G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-40G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-40G>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-76587695-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587695
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587695
    reference: chr 16
allele count: 1
allele frequency: 1.010019392372334e-5
allele num: 99008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-38C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-38C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-38C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-38C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-38C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-38C>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-38C>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18503
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-76587697-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587697
    reference: chr 16
allele count: 1
allele frequency: 1.004217714400482e-5
allele num: 99580
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-36A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-36A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-36A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-36A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-36A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-36A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-36A>C
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

16-76587697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587697
    reference: chr 16
allele count: 1
allele frequency: 1.004217714400482e-5
allele num: 99580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-36A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-36A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-36A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-36A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-36A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-36A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-36A>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-76587699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587699
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587699
    reference: chr 16
allele count: 1
allele frequency: 9.982430921578023e-6
allele num: 100176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-34A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-34A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-34A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-34A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-34A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-34A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-34A>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

16-76587706-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587706
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587706
    reference: chr 16
allele count: 5
allele frequency: 4.881573038095796e-5
allele num: 102426
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-27T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-27T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-27T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-27T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-27T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-27T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-27T>C
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28061
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-76587721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587721
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587721
    reference: chr 16
allele count: 4
allele frequency: 3.662869491960002e-5
allele num: 109204
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-12C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-12C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-12C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-12C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-12C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-12C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-12C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-76587727-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587727
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587727
    reference: chr 16
allele count: 1
allele frequency: 9.005114905266191e-6
allele num: 111048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-6C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-6C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-6C>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-6C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-6C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-6C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-6C>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: c.86-6C>A
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-76587727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587727
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587727
    reference: chr 16
allele count: 1
allele frequency: 9.005114905266191e-6
allele num: 111048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.86-6C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3659-6C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4046-6C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3671-6C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3515-6C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3443-6C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3517-6C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37210
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.75e1
  variant carriers: 0
hgvs: c.86-6C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

16-76587739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587739
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587739
    reference: chr 16
allele count: 1
allele frequency: 8.824879099156342e-6
allele num: 113316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.92C>T
  hgvsp: ENSP00000455258.1:p.Ser31Phe
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3665C>T
  hgvsp: ENSP00000306893.8:p.Ser1222Phe
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3449C>T
  hgvsp: ENSP00000418741.1:p.Ser1150Phe
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3523C>T
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3677C>T
  hgvsp: ENSP00000417628.1:p.Ser1226Phe
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3521C>T
  hgvsp: ENSP00000439733.1:p.Ser1174Phe
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4052C>T
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1150Phe
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

16-76587748-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587748
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587748
    reference: chr 16
allele count: 1
allele frequency: 8.743245842586601e-6
allele num: 114374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3532T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3686T>C
  hgvsp: ENSP00000417628.1:p.Ile1229Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3458T>C
  hgvsp: ENSP00000418741.1:p.Ile1153Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3530T>C
  hgvsp: ENSP00000439733.1:p.Ile1177Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3674T>C
  hgvsp: ENSP00000306893.8:p.Ile1225Thr
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4061T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.101T>C
  hgvsp: ENSP00000455258.1:p.Ile34Thr
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile1153Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-76587748-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587748
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587748
    reference: chr 16
allele count: 1
allele frequency: 8.743245842586601e-6
allele num: 114374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.101T>G
  hgvsp: ENSP00000455258.1:p.Ile34Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3530T>G
  hgvsp: ENSP00000439733.1:p.Ile1177Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4061T>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3686T>G
  hgvsp: ENSP00000417628.1:p.Ile1229Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3674T>G
  hgvsp: ENSP00000306893.8:p.Ile1225Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3458T>G
  hgvsp: ENSP00000418741.1:p.Ile1153Arg
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3532T>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38754
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1153Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-76587750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587750
    reference: chr 16
allele count: 65
allele frequency: 5.67804605332122e-4
allele num: 114476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3676G>A
  hgvsp: ENSP00000306893.8:p.Asp1226Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3532G>A
  hgvsp: ENSP00000439733.1:p.Asp1178Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.103G>A
  hgvsp: ENSP00000455258.1:p.Asp35Asn
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3534G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4063G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3688G>A
  hgvsp: ENSP00000417628.1:p.Asp1230Asn
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3460G>A
  hgvsp: ENSP00000418741.1:p.Asp1154Asn
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 38611
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp1154Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/16-76587751-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587751
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587751
    reference: chr 16
allele count: 3
allele frequency: 2.618303688317129e-5
allele num: 114578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4064A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3689A>C
  hgvsp: ENSP00000417628.1:p.Asp1230Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3461A>C
  hgvsp: ENSP00000418741.1:p.Asp1154Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3535A>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3533A>C
  hgvsp: ENSP00000439733.1:p.Asp1178Ala
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.104A>C
  hgvsp: ENSP00000455258.1:p.Asp35Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3677A>C
  hgvsp: ENSP00000306893.8:p.Asp1226Ala
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp1154Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-76587752-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587752
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587752
    reference: chr 16
allele count: 1
allele frequency: 8.726460373143445e-6
allele num: 114594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4065T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3690T>C
  hgvsp: ENST00000476707.1:c.3690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3536T>C
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.105T>C
  hgvsp: ENST00000563764.1:c.105T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3534T>C
  hgvsp: ENST00000377504.4:c.3534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3678T>C
  hgvsp: ENST00000307431.8:c.3678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3462T>C
  hgvsp: ENST00000478060.1:c.3462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3876
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp1154Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-76587759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587759
    reference: chr 16
allele count: 1
allele frequency: 8.720676724513823e-6
allele num: 114670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3541G>A
  hgvsp: ENSP00000439733.1:p.Glu1181Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3543G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.112G>A
  hgvsp: ENSP00000455258.1:p.Glu38Lys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3697G>A
  hgvsp: ENSP00000417628.1:p.Glu1233Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3685G>A
  hgvsp: ENSP00000306893.8:p.Glu1229Lys
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4072G>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3469G>A
  hgvsp: ENSP00000418741.1:p.Glu1157Lys
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu1157Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

16-76587760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587760
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587760
    reference: chr 16
allele count: 4
allele frequency: 3.487844860660598e-5
allele num: 114684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3542A>G
  hgvsp: ENSP00000439733.1:p.Glu1181Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3470A>G
  hgvsp: ENSP00000418741.1:p.Glu1157Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3698A>G
  hgvsp: ENSP00000417628.1:p.Glu1233Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3686A>G
  hgvsp: ENSP00000306893.8:p.Glu1229Gly
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3544A>G
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.113A>G
  hgvsp: ENSP00000455258.1:p.Glu38Gly
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4073A>G
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu1157Gly
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-76587769-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76587769
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 76587769
    reference: chr 16
allele count: 1
allele frequency: 8.771006560712907e-6
allele num: 114012
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000261833
  ensembl protein: ENSP00000455258
  ensembl transcript: ENST00000563764
  gene symbol: RP11-58C22.1
  hgvsc: ENST00000563764.1:c.122C>A
  hgvsp: ENSP00000455258.1:p.Ala41Asp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000306893
  ensembl transcript: ENST00000307431
  gene symbol: CNTNAP4
  hgvsc: ENST00000307431.8:c.3695C>A
  hgvsp: ENSP00000306893.8:p.Ala1232Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469589
  gene symbol: CNTNAP4
  hgvsc: ENST00000469589.1:n.4082C>A
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000417628
  ensembl transcript: ENST00000476707
  gene symbol: CNTNAP4
  hgvsc: ENST00000476707.1:c.3707C>A
  hgvsp: ENSP00000417628.1:p.Ala1236Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000418741
  ensembl transcript: ENST00000478060
  gene symbol: CNTNAP4
  hgvsc: ENST00000478060.1:c.3479C>A
  hgvsp: ENSP00000418741.1:p.Ala1160Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152910
  ensembl protein: ENSP00000439733
  ensembl transcript: ENST00000377504
  gene symbol: CNTNAP4
  hgvsc: ENST00000377504.4:c.3551C>A
  hgvsp: ENSP00000439733.1:p.Ala1184Asp
  variant of: http://identifiers.org/hgnc/18747
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152910
  ensembl transcript: ENST00000469667
  gene symbol: CNTNAP4
  hgvsc: ENST00000469667.1:n.3553C>A
  variant of: http://identifiers.org/hgnc/18747
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1160Asp
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3031
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61974
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.349415e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.953e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.764e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

QD
type: SiteQuality
SIO_000300: 7.34e0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.612331108316404e-5
allele num: 62022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 2.392e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

VQSLOD
type: SiteQuality
SIO_000300: -1.684e0

DP
type: SiteQuality
SIO_000300: 1.350836e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24074
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14932
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 1.349918e6

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

FS
type: SiteQuality
SIO_000300: 2.893e0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

GenotypeQuality
all individuals: 3299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.231539828728389e-5
allele num: 61890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.697026520225021e-5
allele num: 14932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.700962250185048e-4
allele num: 8106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
SIO_000300: 2.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.349918e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
all individuals: 3201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615456689606152e-5
allele num: 61902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.91e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

FS
type: SiteQuality
SIO_000300: 6.496e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

DP
type: SiteQuality
SIO_000300: 1.352487e6

GenotypeQuality
all individuals: 4026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.534706331045004e-5
allele num: 10488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.35241e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.886e0

QD
type: SiteQuality
SIO_000300: 3.314e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

GenotypeQuality
all individuals: 1297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614257118873894e-5
allele num: 61948
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

DP
type: SiteQuality
SIO_000300: 1.351003e6

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

QD
type: SiteQuality
SIO_000300: 6.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 1.7551e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 9075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3698
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.234048057954141e-5
allele num: 61842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.845e0

FS
type: SiteQuality
SIO_000300: 2.93e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 1.350129e6

QD
type: SiteQuality
SIO_000300: 1.112e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14886
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.325581395348837e-4
allele num: 8600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.350447e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

FS
type: SiteQuality
SIO_000300: 2.0717e1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 3699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
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variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.758583400919168e-5
allele num: 14796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.4889e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.268e0

DP
type: SiteQuality
SIO_000300: 1.346634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
all individuals: 2963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.238543472875898e-4
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.032520325203252e-4
allele num: 14760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.032e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.34813e6

QD
type: SiteQuality
SIO_000300: 1.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.861763847924027e-5
allele num: 61706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

DP
type: SiteQuality
SIO_000300: 1.34813e6

FS
type: SiteQuality
SIO_000300: 4.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

GenotypeQuality
all individuals: 1075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61765181662299e-5
allele num: 61818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.834e0

QD
type: SiteQuality
SIO_000300: 1.016e1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

DP
type: SiteQuality
SIO_000300: 1.353978e6

GenotypeQuality
all individuals: 1412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3705
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617442499919128e-5
allele num: 61826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

QD
type: SiteQuality
SIO_000300: 1.706e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 1.357491e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

VQSLOD
type: SiteQuality
SIO_000300: -7.969999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 2987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.072e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 7.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.763e1

VQSLOD
type: SiteQuality
SIO_000300: -2.304e0

DP
type: SiteQuality
SIO_000300: 1.358763e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.324e0

FS
type: SiteQuality
SIO_000300: 1.643e0

VQSLOD
type: SiteQuality
SIO_000300: -1.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

DP
type: SiteQuality
SIO_000300: 1.359851e6

MQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 6.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.455086335122551e-4
allele num: 61852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14658
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.757e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.378215e6

QD
type: SiteQuality
SIO_000300: 1.266e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 26687
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616762594580612e-5
allele num: 61852
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 1.757e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.378215e6

GenotypeQuality
all individuals: 279
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
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GenotypeQuality
all individuals: 2632
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 6.75e1
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GenotypeQuality
all individuals: 1172
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230314960629921e-4
allele num: 8128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.380849e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 1.097e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 1237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
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GenotypeQuality
all individuals: 27039
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variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.386473e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.529e-1

GenotypeQuality
all individuals: 337
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 9.75e1
variant carriers: 405

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1706
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 361
allele frequency: 4.180176007410839e-2
allele num: 8636
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.424203245200078e-4
allele num: 61876
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.727024815925825e-4
allele num: 14668
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.712871287128713e-3
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 2.119460500963391e-3
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.463054187192118e-4
allele num: 8120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.3959e6

QD
type: SiteQuality
SIO_000300: 1.638e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.615195761726321e-4
allele num: 61912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14678
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.229105211406096e-4
allele num: 8136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 4.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.939e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.398653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

GenotypeQuality
all individuals: 2296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615195761726321e-5
allele num: 61912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.939e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 4.076e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.398653e6

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

GenotypeQuality
all individuals: 1239
bin: 5.25e1
variant carriers: 396

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 80

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 397

GenotypeQuality
all individuals: 1023
bin: 4.75e1
variant carriers: 373

GenotypeQuality
all individuals: 17196
bin: 6.25e1
variant carriers: 446

GenotypeQuality
all individuals: 300
bin: 7.5e0
variant carriers: 81

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 375

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 301

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 235

GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 209

GenotypeQuality
all individuals: 25826
bin: 9.75e1
variant carriers: 25157

European (Finnish)
type: Population
allele count: 1718
allele frequency: 2.7916802079948e-1
allele num: 6154
num of homozygotes: 228

Other
type: Population
allele count: 219
allele frequency: 2.69041769041769e-1
allele num: 814
num of homozygotes: 29

Latino
type: Population
allele count: 2348
allele frequency: 2.26509743391858e-1
allele num: 10366
num of homozygotes: 214

European (Non-Finnish)
type: Population
allele count: 18460
allele frequency: 2.964318977422359e-1
allele num: 62274
num of homozygotes: 2630

East Asian
type: Population
allele count: 2444
allele frequency: 3.006150061500615e-1
allele num: 8130
num of homozygotes: 353

South Asian
type: Population
allele count: 5781
allele frequency: 3.828983971386939e-1
allele num: 15098
num of homozygotes: 1096

African
type: Population
allele count: 3218
allele frequency: 3.642743943853294e-1
allele num: 8834
num of homozygotes: 558

DP
type: SiteQuality
SIO_000300: 1.713453e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.611e1

GenotypeQuality
all individuals: 1170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 30865
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.58508604206501e-4
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.319171534784917e-5
allele num: 60256
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.314725940894166e-4
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.339653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeQuality
all individuals: 1626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.51497005988024e-3
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60264
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.965599051008304e-4
allele num: 10116
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 1.338988e6

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 1626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31952
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14142
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.395209580838323e-4
allele num: 8350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.338988e6

QD
type: SiteQuality
SIO_000300: 1.504e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 1295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 3
allele frequency: 3.801317790167258e-4
allele num: 7892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

QD
type: SiteQuality
SIO_000300: 8.84e0

FS
type: SiteQuality
SIO_000300: 3.497e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

DP
type: SiteQuality
SIO_000300: 1.33513e6

GenotypeQuality
all individuals: 1480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.219174126479931e-5
allele num: 13852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.32212e6

FS
type: SiteQuality
SIO_000300: 2.392e0

MQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.362e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

QD
type: SiteQuality
SIO_000300: 3.374e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1907
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.330254041570439e-4
allele num: 13856
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.029220779220779e-4
allele num: 9856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 8.106464905762345e-4
allele num: 59212
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 1.322647e6

GenotypeQuality
all individuals: 32235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.230657989877079e-5
allele num: 13830
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.471e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.807e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.318142e6

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1353
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32030
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.700448918514488e-5
allele num: 58808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.581e0

QD
type: SiteQuality
SIO_000300: 2.686e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 1.31464e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 3409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.303101381287464e-4
allele num: 7674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.236093943139679e-4
allele num: 8090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58398
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.307003e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.712387410527758e-5
allele num: 58398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.307003e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
all individuals: 1379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.392075694855116e-5
allele num: 13528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.103e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 1.935e0

DP
type: SiteQuality
SIO_000300: 1.291154e6

QD
type: SiteQuality
SIO_000300: 6.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13837
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
all individuals: 1410
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variant carriers: 0

GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 1341
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variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743496757096032e-5
allele num: 57356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.245e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.287016e6

GenotypeQuality
all individuals: 753
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.751068151572459e-5
allele num: 57108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.282284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 2.084e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: -3.505e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

GenotypeQuality
all individuals: 714
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
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GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.797203551274217e-5
allele num: 55642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 4.87e0

FS
type: SiteQuality
SIO_000300: 1.725e0

VQSLOD
type: SiteQuality
SIO_000300: -2.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.245116e6

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.859289007883385e-5
allele num: 53784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.587e-1

FS
type: SiteQuality
SIO_000300: 4.713e0

QD
type: SiteQuality
SIO_000300: 9.35e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.191831e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.351716680183834e-4
allele num: 7398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.564e1

MQ
type: SiteQuality
SIO_000300: 5.797e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: -1.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.508780732563974e-4
allele num: 11958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.962477431509538e-5
allele num: 50956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

FS
type: SiteQuality
SIO_000300: 3.328e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

DP
type: SiteQuality
SIO_000300: 1.107584e6

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.338e1

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.40805406927626e-4
allele num: 7102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.583311805734952e-4
allele num: 7742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.395311752511561e-4
allele num: 50168
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 1.373e0

DP
type: SiteQuality
SIO_000300: 1.080033e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 1327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.95159386068477e-4
allele num: 6776
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.278159213212098e-5
allele num: 10778
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.329297820823245e-3
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 9.36891e5

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

GenotypeQuality
all individuals: 31028
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 304
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GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.375027343920899e-5
allele num: 45714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 9.35195e5

VQSLOD
type: SiteQuality
SIO_000300: -9.823e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

MQ
type: SiteQuality
SIO_000300: 5.699e1

MQRankSum
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 4.549e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.220445865529798e-5
allele num: 45036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 9.14749e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.530456075910621e-4
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.440891731059596e-5
allele num: 45036
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.14749e5

QD
type: SiteQuality
SIO_000300: 1.232e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 222
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 655
allele frequency: 1.477288105011502e-2
allele num: 44338
num of homozygotes: 3

Latino
type: Population
allele count: 33
allele frequency: 5.083179297597043e-3
allele num: 6492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 35
allele frequency: 7.94010889292196e-3
allele num: 4408
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.263157894736842e-3
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 3.551575046324892e-3
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.751533742331289e-4
allele num: 10432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.96528e5

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.555e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.345e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 32330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
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GenotypeQuality
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GenotypeQuality
all individuals: 340
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.398081534772182e-4
allele num: 4170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.32203e5

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
all individuals: 1462
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.059192552868562e-5
allele num: 39532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.9621e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

FS
type: SiteQuality
SIO_000300: 1.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeQuality
all individuals: 3900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.828534253549811e-5
allele num: 35354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

QD
type: SiteQuality
SIO_000300: 1.757e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

DP
type: SiteQuality
SIO_000300: 7.36527e5

GenotypeQuality
all individuals: 792
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.402620196828183e-5
allele num: 31906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.99203187250996e-4
allele num: 5020
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 7.04059e5

GenotypeQuality
all individuals: 1855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.804262478968031e-4
allele num: 3566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.642e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

DP
type: SiteQuality
SIO_000300: 7.02277e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 4189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3089
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.194743130227001e-4
allele num: 8370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.576905591756326e-5
allele num: 13198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.716643127926857e-5
allele num: 53812
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.244e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -4.086e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

DP
type: SiteQuality
SIO_000300: 1.182074e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

QD
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeQuality
all individuals: 7483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3646
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3879
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6964
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.910675901600191e-3
allele num: 8374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.191221e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 1.519e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
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GenotypeQuality
all individuals: 3870
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6130
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variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13242
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.305396096440872e-4
allele num: 6968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

DP
type: SiteQuality
SIO_000300: 1.219212e6

QD
type: SiteQuality
SIO_000300: 1.264e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2131
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.124859392575928e-4
allele num: 8890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.373e0

FS
type: SiteQuality
SIO_000300: 1.998e0

DP
type: SiteQuality
SIO_000300: 1.240563e6

VQSLOD
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821891852499636e-5
allele num: 54888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.261057e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 3574
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22773
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GenotypeQuality
all individuals: 3871
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GenotypeQuality
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GenotypeQuality
all individuals: 570
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GenotypeQuality
all individuals: 236
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GenotypeQuality
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GenotypeQuality
all individuals: 2226
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GenotypeQuality
all individuals: 4734
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821891852499636e-5
allele num: 54888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13374
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.261057e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 3870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5844
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.810216863980305e-5
allele num: 55242
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.280057e6

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.818e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 2725
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 750
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 751
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.836732529779788e-5
allele num: 56582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 1.35159e6

QD
type: SiteQuality
SIO_000300: 1.405e1

FS
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39847
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.472271914132379e-4
allele num: 8944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14236
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.463103e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 596
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.229105211406096e-4
allele num: 8136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.715e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.488482e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 1024
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variant carriers: 0

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 5257
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variant carriers: 0

GenotypeQuality
all individuals: 596
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variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620640477116556e-5
allele num: 61704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.715e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.488482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 401
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3877
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variant carriers: 1

GenotypeQuality
all individuals: 317
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variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586848202100987e-5
allele num: 63018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

QD
type: SiteQuality
SIO_000300: 9.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 3.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.519638e6

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 725
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
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GenotypeQuality
all individuals: 299
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197891710589363e-4
allele num: 8348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.474e0

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 1.533881e6

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

GenotypeQuality
all individuals: 725
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 452
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GenotypeQuality
all individuals: 401
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197891710589363e-4
allele num: 8348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.533881e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

FS
type: SiteQuality
SIO_000300: 3.474e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 463
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GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

East Asian
type: Population
allele count: 63
allele frequency: 7.548526240115025e-3
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63688
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.340482573726542e-4
allele num: 14920
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.53665e6

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 3365
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 147
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GenotypeQuality
all individuals: 449
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 487
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.705882352941177e-5
allele num: 63750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.536403e6

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568184669426672e-5
allele num: 63768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 6.374e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

QD
type: SiteQuality
SIO_000300: 1.509e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.29e-1

DP
type: SiteQuality
SIO_000300: 1.536941e6

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566514192618585e-5
allele num: 63836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14936
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.538892e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

QD
type: SiteQuality
SIO_000300: 7.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.343e0

GenotypeQuality
all individuals: 430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44539
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.3122035360069e-4
allele num: 9276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 2.974e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 1.538708e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 508
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0