12-53450847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450847
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450847
    reference: chr 12
allele count: 1
allele frequency: 9.296617890411468e-6
allele num: 107566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.812A>G
  hgvsp: ENSP00000393362.1:p.Lys271Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.812A>G
  hgvsp: ENSP00000449361.1:p.Lys271Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.842A>G
  hgvsp: ENSP00000319756.3:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.440A>G
  hgvsp: ENSP00000369232.3:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.812A>G
  hgvsp: ENSP00000447021.1:p.Lys271Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.812A>G
  hgvsp: ENSP00000319684.6:p.Lys271Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.812A>G
  hgvsp: ENSP00000449363.1:p.Lys271Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.947A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37267
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys281Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-53450852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450852
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450852
    reference: chr 12
allele count: 2
allele frequency: 1.870207593042828e-5
allele num: 106940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.817G>A
  hgvsp: ENSP00000447021.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.952G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.817G>A
  hgvsp: ENSP00000449363.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.817G>A
  hgvsp: ENSP00000319684.6:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.817G>A
  hgvsp: ENSP00000449361.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.817G>A
  hgvsp: ENSP00000393362.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.847G>A
  hgvsp: ENSP00000319756.3:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.445G>A
  hgvsp: ENSP00000369232.3:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala283Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

12-53450855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450855
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450855
    reference: chr 12
allele count: 1
allele frequency: 9.466469764095574e-6
allele num: 105636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.820A>G
  hgvsp: ENSP00000449363.1:p.Thr274Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.820A>G
  hgvsp: ENSP00000449361.1:p.Thr274Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.850A>G
  hgvsp: ENSP00000319756.3:p.Thr284Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.955A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.820A>G
  hgvsp: ENSP00000447021.1:p.Thr274Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.820A>G
  hgvsp: ENSP00000319684.6:p.Thr274Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.820A>G
  hgvsp: ENSP00000393362.1:p.Thr274Ala
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.448A>G
  hgvsp: ENSP00000369232.3:p.Thr150Ala
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr284Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

12-53450856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450856
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450856
    reference: chr 12
allele count: 1
allele frequency: 9.493791060646337e-6
allele num: 105332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.821C>T
  hgvsp: ENSP00000319684.6:p.Thr274Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.956C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.851C>T
  hgvsp: ENSP00000319756.3:p.Thr284Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.821C>T
  hgvsp: ENSP00000449361.1:p.Thr274Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.449C>T
  hgvsp: ENSP00000369232.3:p.Thr150Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.821C>T
  hgvsp: ENSP00000393362.1:p.Thr274Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.821C>T
  hgvsp: ENSP00000447021.1:p.Thr274Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.821C>T
  hgvsp: ENSP00000449363.1:p.Thr274Ile
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr284Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

12-53450862-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450862
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450862
    reference: chr 12
allele count: 5
allele frequency: 4.825789016504198e-5
allele num: 103610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.827T>A
  hgvsp: ENSP00000449361.1:p.Leu276Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.962T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.827T>A
  hgvsp: ENSP00000449363.1:p.Leu276Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.827T>A
  hgvsp: ENSP00000393362.1:p.Leu276Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.827T>A
  hgvsp: ENSP00000447021.1:p.Leu276Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.455T>A
  hgvsp: ENSP00000369232.3:p.Leu152Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.857T>A
  hgvsp: ENSP00000319756.3:p.Leu286Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.827T>A
  hgvsp: ENSP00000319684.6:p.Leu276Gln
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32207
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu286Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

12-53450865-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450865
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450865
    reference: chr 12
allele count: 2
allele frequency: 1.978278502047518e-5
allele num: 101098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.830A>G
  hgvsp: ENSP00000449361.1:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.458A>G
  hgvsp: ENSP00000369232.3:p.Gln153Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.830A>G
  hgvsp: ENSP00000393362.1:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.830A>G
  hgvsp: ENSP00000447021.1:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.860A>G
  hgvsp: ENSP00000319756.3:p.Gln287Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.830A>G
  hgvsp: ENSP00000319684.6:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.830A>G
  hgvsp: ENSP00000449363.1:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.965A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln287Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

12-53450876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450876
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450876
    reference: chr 12
allele count: 3
allele frequency: 3.122658006495129e-5
allele num: 96072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.841C>T
  hgvsp: ENSP00000449361.1:p.Arg281Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.871C>T
  hgvsp: ENSP00000319756.3:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.841C>T
  hgvsp: ENSP00000319684.6:p.Arg281Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.841C>T
  hgvsp: ENSP00000449363.1:p.Arg281Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.841C>T
  hgvsp: ENSP00000393362.1:p.Arg281Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.841C>T
  hgvsp: ENSP00000447021.1:p.Arg281Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.469C>T
  hgvsp: ENSP00000369232.3:p.Arg157Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.976C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23652
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg291Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

12-53450877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450877
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450877
    reference: chr 12
allele count: 1
allele frequency: 1.041579868344305e-5
allele num: 96008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.977G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.842G>A
  hgvsp: ENSP00000319684.6:p.Arg281His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.470G>A
  hgvsp: ENSP00000369232.3:p.Arg157His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.842G>A
  hgvsp: ENSP00000447021.1:p.Arg281His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.872G>A
  hgvsp: ENSP00000319756.3:p.Arg291His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.842G>A
  hgvsp: ENSP00000449361.1:p.Arg281His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.842G>A
  hgvsp: ENSP00000449363.1:p.Arg281His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.842G>A
  hgvsp: ENSP00000393362.1:p.Arg281His
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg291His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-53450880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450880
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450880
    reference: chr 12
allele count: 1
allele frequency: 1.062518594075396e-5
allele num: 94116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845G>A
  hgvsp: ENSP00000319684.6:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473G>A
  hgvsp: ENSP00000369232.3:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845G>A
  hgvsp: ENSP00000447021.1:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845G>A
  hgvsp: ENSP00000393362.1:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845G>A
  hgvsp: ENSP00000449363.1:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875G>A
  hgvsp: ENSP00000319756.3:p.Arg292Gln
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845G>A
  hgvsp: ENSP00000449361.1:p.Arg282Gln
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg292Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

12-53450881-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450881
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450881
    reference: chr 12
allele count: 1
allele frequency: 1.065234990838979e-5
allele num: 93876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+1G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+1G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
hgvs: c.875+1G>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

12-53450893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450893
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450893
    reference: chr 12
allele count: 1
allele frequency: 1.163710841130196e-5
allele num: 85932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+13G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+13G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28105
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-53450903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450903
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450903
    reference: chr 12
allele count: 1
allele frequency: 1.244740969404267e-5
allele num: 80338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+23G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+23G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9118
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

12-53450907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450907
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450907
    reference: chr 12
allele count: 4
allele frequency: 5.149198012409567e-5
allele num: 77682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+27A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+27A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23472
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-53450917-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450917
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450917
    reference: chr 12
allele count: 1
allele frequency: 1.402839346838e-5
allele num: 71284
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+37C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+37C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21570
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

12-53450925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53450925
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53450925
    reference: chr 12
allele count: 12
allele frequency: 1.842751842751843e-4
allele num: 65120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.845+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.473+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.875+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.845+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.845+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.980+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.845+45A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.845+45A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22194
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5338
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

12-53451305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451305
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451305
    reference: chr 12
allele count: 1
allele frequency: 8.808244516867789e-6
allele num: 113530
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-46C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-46C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

12-53451309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451309
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451309
    reference: chr 12
allele count: 2
allele frequency: 1.75960303355563e-5
allele num: 113662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-42A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-42A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29789
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

12-53451313-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451313
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451313
    reference: chr 12
allele count: 1
allele frequency: 8.793527963418924e-6
allele num: 113720
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-38G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-38G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

12-53451322-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451322
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451322
    reference: chr 12
allele count: 1
allele frequency: 8.756874146204771e-6
allele num: 114196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-29T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-29T>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29788
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-53451324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451324
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451324
    reference: chr 12
allele count: 1
allele frequency: 8.75196919306844e-6
allele num: 114260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-27T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-27T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29787
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51675
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

12-53451325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451325
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451325
    reference: chr 12
allele count: 2
allele frequency: 1.749077361691708e-5
allele num: 114346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-26G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-26G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29786
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS

12-53451329-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451329
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451329
    reference: chr 12
allele count: 1
allele frequency: 8.723567590201689e-6
allele num: 114632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-22T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-22T>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29784
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51675
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

12-53451330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451330
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451330
    reference: chr 12
allele count: 1
allele frequency: 8.720372534314665e-6
allele num: 114674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-21C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-21C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-53451331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451331
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451331
    reference: chr 12
allele count: 1
allele frequency: 8.714748840938404e-6
allele num: 114748
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-20C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51676
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-53451338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451338
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451338
    reference: chr 12
allele count: 1
allele frequency: 8.665661449938475e-6
allele num: 115398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-13C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-13C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-53451339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451339
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451339
    reference: chr 12
allele count: 2
allele frequency: 1.728040920008986e-5
allele num: 115738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-12G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-12G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29782
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

12-53451339-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451339
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451339
    reference: chr 12
allele count: 1
allele frequency: 8.64020460004493e-6
allele num: 115738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-12G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-12G>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51678
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

12-53451346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451346
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451346
    reference: chr 12
allele count: 1
allele frequency: 8.551686392556613e-6
allele num: 116936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-5A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-5A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
hgvs: c.876-5A>G
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-53451349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451349
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451349
    reference: chr 12
allele count: 1
allele frequency: 8.516001566944289e-6
allele num: 117426
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.876-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.981-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.846-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.846-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.846-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.846-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.846-2A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.474-2A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29779
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
hgvs: c.876-2A>G
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

12-53451354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451354
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451354
    reference: chr 12
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.849T>C
  hgvsp: ENST00000451358.1:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.849T>C
  hgvsp: ENST00000314250.6:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.849T>C
  hgvsp: ENST00000552570.1:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.879T>C
  hgvsp: ENST00000314276.3:c.879T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.984T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.477T>C
  hgvsp: ENST00000379902.3:c.477T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.849T>C
  hgvsp: ENST00000546602.1:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.849T>C
  hgvsp: ENST00000549700.1:c.849T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51681
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr293Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-53451366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451366
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451366
    reference: chr 12
allele count: 1
allele frequency: 8.371563473194253e-6
allele num: 119452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.891C>T
  hgvsp: ENST00000314276.3:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.861C>T
  hgvsp: ENST00000552570.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.861C>T
  hgvsp: ENST00000546602.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.996C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.861C>T
  hgvsp: ENST00000549700.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.489C>T
  hgvsp: ENST00000379902.3:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.861C>T
  hgvsp: ENST00000314250.6:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.861C>T
  hgvsp: ENST00000451358.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51685
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe297Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-53451375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451375
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451375
    reference: chr 12
allele count: 19
allele frequency: 1.577706181286744e-4
allele num: 120428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.870G>A
  hgvsp: ENST00000552570.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.870G>A
  hgvsp: ENST00000451358.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1005G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.498G>A
  hgvsp: ENST00000379902.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.870G>A
  hgvsp: ENST00000549700.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.870G>A
  hgvsp: ENST00000546602.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.870G>A
  hgvsp: ENST00000314250.6:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.900G>A
  hgvsp: ENST00000314276.3:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29778
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu300Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

12-53451383-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451383
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451383
    reference: chr 12
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1013G>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.878G>T
  hgvsp: ENSP00000393362.1:p.Gly293Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.878G>T
  hgvsp: ENSP00000449361.1:p.Gly293Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.878G>T
  hgvsp: ENSP00000447021.1:p.Gly293Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.878G>T
  hgvsp: ENSP00000449363.1:p.Gly293Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.878G>T
  hgvsp: ENSP00000319684.6:p.Gly293Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.908G>T
  hgvsp: ENSP00000319756.3:p.Gly303Val
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.506G>T
  hgvsp: ENSP00000369232.3:p.Gly169Val
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly303Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

12-53451390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451390
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451390
    reference: chr 12
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1020C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.885C>T
  hgvsp: ENST00000451358.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.885C>T
  hgvsp: ENST00000314250.6:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.513C>T
  hgvsp: ENST00000379902.3:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.885C>T
  hgvsp: ENST00000552570.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.885C>T
  hgvsp: ENST00000549700.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.885C>T
  hgvsp: ENST00000546602.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.915C>T
  hgvsp: ENST00000314276.3:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile305Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

12-53451395-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451395
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451395
    reference: chr 12
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.890T>C
  hgvsp: ENSP00000447021.1:p.Met297Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.890T>C
  hgvsp: ENSP00000393362.1:p.Met297Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.890T>C
  hgvsp: ENSP00000319684.6:p.Met297Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1025T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.890T>C
  hgvsp: ENSP00000449363.1:p.Met297Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.890T>C
  hgvsp: ENSP00000449361.1:p.Met297Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.518T>C
  hgvsp: ENSP00000369232.3:p.Met173Thr
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.920T>C
  hgvsp: ENSP00000319756.3:p.Met307Thr
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met307Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-53451396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451396
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451396
    reference: chr 12
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.891G>A
  hgvsp: ENSP00000393362.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.519G>A
  hgvsp: ENSP00000369232.3:p.Met173Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.891G>A
  hgvsp: ENSP00000449361.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1026G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.891G>A
  hgvsp: ENSP00000449363.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.921G>A
  hgvsp: ENSP00000319756.3:p.Met307Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.891G>A
  hgvsp: ENSP00000319684.6:p.Met297Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.891G>A
  hgvsp: ENSP00000447021.1:p.Met297Ile
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met307Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-53451397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451397
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451397
    reference: chr 12
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1027A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.520A>G
  hgvsp: ENSP00000369232.3:p.Asn174Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.922A>G
  hgvsp: ENSP00000319756.3:p.Asn308Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.892A>G
  hgvsp: ENSP00000393362.1:p.Asn298Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.892A>G
  hgvsp: ENSP00000449361.1:p.Asn298Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.892A>G
  hgvsp: ENSP00000449363.1:p.Asn298Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.892A>G
  hgvsp: ENSP00000447021.1:p.Asn298Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.892A>G
  hgvsp: ENSP00000319684.6:p.Asn298Asp
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn308Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-53451407-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451407
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451407
    reference: chr 12
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.902C>G
  hgvsp: ENSP00000393362.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.902C>G
  hgvsp: ENSP00000319684.6:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.902C>G
  hgvsp: ENSP00000447021.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.530C>G
  hgvsp: ENSP00000369232.3:p.Pro177Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1037C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.902C>G
  hgvsp: ENSP00000449361.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.902C>G
  hgvsp: ENSP00000449363.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.932C>G
  hgvsp: ENSP00000319756.3:p.Pro311Arg
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro311Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

12-53451421-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451421
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451421
    reference: chr 12
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1051T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.916T>A
  hgvsp: ENSP00000447021.1:p.Tyr306Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.916T>A
  hgvsp: ENSP00000449361.1:p.Tyr306Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.916T>A
  hgvsp: ENSP00000449363.1:p.Tyr306Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.946T>A
  hgvsp: ENSP00000319756.3:p.Tyr316Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.916T>A
  hgvsp: ENSP00000319684.6:p.Tyr306Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.544T>A
  hgvsp: ENSP00000369232.3:p.Tyr182Asn
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.916T>A
  hgvsp: ENSP00000393362.1:p.Tyr306Asn
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29771
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr316Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

12-53451422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451422
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451422
    reference: chr 12
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1052A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.917A>G
  hgvsp: ENSP00000449363.1:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.917A>G
  hgvsp: ENSP00000393362.1:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.917A>G
  hgvsp: ENSP00000447021.1:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.917A>G
  hgvsp: ENSP00000319684.6:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.917A>G
  hgvsp: ENSP00000449361.1:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.947A>G
  hgvsp: ENSP00000319756.3:p.Tyr316Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.545A>G
  hgvsp: ENSP00000369232.3:p.Tyr182Cys
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5265
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr316Cys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-53451432-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451432
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451432
    reference: chr 12
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1062C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.927C>A
  hgvsp: ENST00000451358.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.927C>A
  hgvsp: ENST00000552570.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.927C>A
  hgvsp: ENST00000546602.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.927C>A
  hgvsp: ENST00000549700.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.555C>A
  hgvsp: ENST00000379902.3:c.555C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.927C>A
  hgvsp: ENST00000314250.6:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.957C>A
  hgvsp: ENST00000314276.3:c.957C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile319Ile
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-53451435-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451435
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451435
    reference: chr 12
allele count: 2
allele frequency: 1.649212501030758e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.930C>A
  hgvsp: ENST00000549700.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.558C>A
  hgvsp: ENST00000379902.3:c.558C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.930C>A
  hgvsp: ENST00000314250.6:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.960C>A
  hgvsp: ENST00000314276.3:c.960C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.930C>A
  hgvsp: ENST00000546602.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.930C>A
  hgvsp: ENST00000552570.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1065C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.930C>A
  hgvsp: ENST00000451358.1:c.930C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro320Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/12-53451444-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451444
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451444
    reference: chr 12
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.939A>C
  hgvsp: ENST00000451358.1:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.969A>C
  hgvsp: ENST00000314276.3:c.969A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.939A>C
  hgvsp: ENST00000552570.1:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.567A>C
  hgvsp: ENST00000379902.3:c.567A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.939A>C
  hgvsp: ENST00000546602.1:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.939A>C
  hgvsp: ENST00000549700.1:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.939A>C
  hgvsp: ENST00000314250.6:c.939A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1074A>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro323Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

12-53451449-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451449
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451449
    reference: chr 12
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.944T>G
  hgvsp: ENSP00000449363.1:p.Phe315Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.944T>G
  hgvsp: ENSP00000447021.1:p.Phe315Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1079T>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.572T>G
  hgvsp: ENSP00000369232.3:p.Phe191Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.974T>G
  hgvsp: ENSP00000319756.3:p.Phe325Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.944T>G
  hgvsp: ENSP00000393362.1:p.Phe315Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.944T>G
  hgvsp: ENSP00000449361.1:p.Phe315Cys
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.944T>G
  hgvsp: ENSP00000319684.6:p.Phe315Cys
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe325Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

12-53451456-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451456
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451456
    reference: chr 12
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.981T>C
  hgvsp: ENST00000314276.3:c.981T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.579T>C
  hgvsp: ENST00000379902.3:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.951T>C
  hgvsp: ENST00000549700.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.951T>C
  hgvsp: ENST00000451358.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.951T>C
  hgvsp: ENST00000314250.6:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.951T>C
  hgvsp: ENST00000546602.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.951T>C
  hgvsp: ENST00000552570.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1086T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro327Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-53451458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451458
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451458
    reference: chr 12
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1088G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.983G>A
  hgvsp: ENSP00000319756.3:p.Gly328Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.581G>A
  hgvsp: ENSP00000369232.3:p.Gly194Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.953G>A
  hgvsp: ENSP00000449363.1:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.953G>A
  hgvsp: ENSP00000449361.1:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.953G>A
  hgvsp: ENSP00000447021.1:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.953G>A
  hgvsp: ENSP00000393362.1:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.953G>A
  hgvsp: ENSP00000319684.6:p.Gly318Asp
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly328Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

12-53451461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451461
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451461
    reference: chr 12
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.956C>T
  hgvsp: ENSP00000449361.1:p.Thr319Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1091C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.584C>T
  hgvsp: ENSP00000369232.3:p.Thr195Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.956C>T
  hgvsp: ENSP00000393362.1:p.Thr319Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.956C>T
  hgvsp: ENSP00000447021.1:p.Thr319Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.986C>T
  hgvsp: ENSP00000319756.3:p.Thr329Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.956C>T
  hgvsp: ENSP00000449363.1:p.Thr319Ile
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.956C>T
  hgvsp: ENSP00000319684.6:p.Thr319Ile
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr329Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

12-53451478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451478
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451478
    reference: chr 12
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+15G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+15G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29768
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

12-53451483-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451483
    reference: chr 12
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+20G>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+20G>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29765
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

12-53451485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451485
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451485
    reference: chr 12
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+22T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+22T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29764
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-53451486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451486
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451486
    reference: chr 12
allele count: 2001
allele frequency: 1.650581539222964e-2
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+23C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+23C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 29825
  bin: 9.75e1
  variant carriers: 1753
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 16
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-53451492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451492
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451492
    reference: chr 12
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+29G>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+29G>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29045
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-53451501-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451501
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451501
    reference: chr 12
allele count: 18
allele frequency: 1.484609547688958e-4
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+38C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+38C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29047
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

12-53451504-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451504
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451504
    reference: chr 12
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.988+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.958+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.958+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.958+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.586+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1093+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.958+41T>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.958+41T>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29041
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51710
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-53451513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451513
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451513
    reference: chr 12
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-44C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-44C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29041
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-53451514-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451514
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451514
    reference: chr 12
allele count: 15
allele frequency: 1.237031783469957e-4
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-43T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-43T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

12-53451517-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451517
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451517
    reference: chr 12
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-40A>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-40A>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29038
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-53451517-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451517
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451517
    reference: chr 12
allele count: 7
allele frequency: 5.772529357435018e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-40A>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-40A>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29038
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51720
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/12-53451518-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451518
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451518
    reference: chr 12
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-39C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-39C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29038
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/12-53451525-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451525
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451525
    reference: chr 12
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-32C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-32C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29038
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-53451528-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451528
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451528
    reference: chr 12
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-29C>G
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-29C>G
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-53451528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451528
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451528
    reference: chr 12
allele count: 2
allele frequency: 1.649566164098842e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-29C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51724
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

12-53451530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451530
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451530
    reference: chr 12
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.1C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-27C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-27C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-53451537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451537
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451537
    reference: chr 12
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-20C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-53451539-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451539
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451536
    reference: chr 12
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-14_959-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-14_959-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.14_16delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-14_989-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-14_959-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-14_1094-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-14_959-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-14_959-12delCTC
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-14_587-12delCTC
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29034
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: TCTC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-53451540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451540
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451540
    reference: chr 12
allele count: 3
allele frequency: 2.476064707824365e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.11C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-17C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-17C>A
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29032
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS

12-53451546-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451546
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451546
    reference: chr 12
allele count: 6
allele frequency: 4.954664816925135e-5
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.17T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-11T>C
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-11T>C
  variant of: http://identifiers.org/hgnc/19737
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29032
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-53451549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451549
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451549
    reference: chr 12
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.20C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-8C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-8C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29028
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: c.989-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-53451551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451551
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451551
    reference: chr 12
allele count: 3
allele frequency: 2.478478544637399e-5
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.959-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.989-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.959-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.959-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.959-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1094-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.22C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.587-6C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.959-6C>T
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29028
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: c.989-6C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-53451558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451558
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451558
    reference: chr 12
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.960C>T
  hgvsp: ENST00000552570.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.990C>T
  hgvsp: ENST00000314276.3:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.960C>T
  hgvsp: ENST00000451358.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.960C>T
  hgvsp: ENST00000546602.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.588C>T
  hgvsp: ENST00000379902.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.960C>T
  hgvsp: ENST00000549700.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.29C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1095C>T
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.960C>T
  hgvsp: ENST00000314250.6:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
hgvs: c.990C>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-53451566-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53451566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 53451566
    reference: chr 12
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319756
  ensembl transcript: ENST00000314276
  gene symbol: TENC1
  hgvsc: ENST00000314276.3:c.998C>A
  hgvsp: ENSP00000319756.3:p.Pro333His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449363
  ensembl transcript: ENST00000546602
  gene symbol: TENC1
  hgvsc: ENST00000546602.1:c.968C>A
  hgvsp: ENSP00000449363.1:p.Pro323His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000319684
  ensembl transcript: ENST00000314250
  gene symbol: TENC1
  hgvsc: ENST00000314250.6:c.968C>A
  hgvsp: ENSP00000319684.6:p.Pro323His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549311
  gene symbol: TENC1
  hgvsc: ENST00000549311.3:n.1103C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000369232
  ensembl transcript: ENST00000379902
  gene symbol: TENC1
  hgvsc: ENST00000379902.3:c.596C>A
  hgvsp: ENSP00000369232.3:p.Pro199His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000449361
  ensembl transcript: ENST00000549700
  gene symbol: TENC1
  hgvsc: ENST00000549700.1:c.968C>A
  hgvsp: ENSP00000449361.1:p.Pro323His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000393362
  ensembl transcript: ENST00000451358
  gene symbol: TENC1
  hgvsc: ENST00000451358.1:c.968C>A
  hgvsp: ENSP00000393362.1:p.Pro323His
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000111077
  ensembl transcript: ENST00000549789
  gene symbol: TENC1
  hgvsc: ENST00000549789.1:n.37C>A
  variant of: http://identifiers.org/hgnc/19737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000111077
  ensembl protein: ENSP00000447021
  ensembl transcript: ENST00000552570
  gene symbol: TENC1
  hgvsc: ENST00000552570.1:c.968C>A
  hgvsp: ENSP00000447021.1:p.Pro323His
  variant of: http://identifiers.org/hgnc/19737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro333His
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.75e1
variant carriers: 1

African
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allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.217433649866082e-4
allele num: 8214
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60320
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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FS
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.3e-3

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60010
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

Latino
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allele frequency: 1.947798987144527e-4
allele num: 10268
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.687763713080169e-5
allele num: 59250
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14090
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.209955e6

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -9.22e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.038e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.692734782314307e-5
allele num: 59076
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14064
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.663e0

FS
type: SiteQuality
SIO_000300: 1.322e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.205714e6

QD
type: SiteQuality
SIO_000300: 5.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.613857974709713e-5
allele num: 58046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 2.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.175151e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.083333333333333e-4
allele num: 9600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13676
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.158e1

FS
type: SiteQuality
SIO_000300: 5.6e0

DP
type: SiteQuality
SIO_000300: 1.131818e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.366493577480186e-4
allele num: 7318
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.728282752963984e-5
allele num: 53644
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.864836640310309e-5
allele num: 53624
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Other
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South Asian
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.656967840735069e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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Latino
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 9.27e0

GenotypeQuality
all individuals: 1080
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13068
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.275510204081633e-4
allele num: 7840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8792
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

QD
type: SiteQuality
SIO_000300: 1.761e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

DP
type: SiteQuality
SIO_000300: 1.003473e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 1.063e0

VQSLOD
type: SiteQuality
SIO_000300: -5.245e-1

GenotypeQuality
all individuals: 1878
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.802e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 8.62499e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

QD
type: SiteQuality
SIO_000300: 1.42e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 458
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.385809312638581e-4
allele num: 7216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.754e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

QD
type: SiteQuality
SIO_000300: 1.789e1

DP
type: SiteQuality
SIO_000300: 7.94938e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.276437847866419e-5
allele num: 43120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 4.238e0

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-2

QD
type: SiteQuality
SIO_000300: 1.138e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 7.7159e5

GenotypeQuality
all individuals: 2558
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 415
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1006
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.540392236561325e-5
allele num: 39364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.59e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.147e0

DP
type: SiteQuality
SIO_000300: 7.30152e5

GenotypeQuality
all individuals: 5111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 1

GenotypeQuality
all individuals: 4731
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 7198
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 388
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.110699740836727e-3
allele num: 10804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.273e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 7.05215e5

GenotypeQuality
all individuals: 51673
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 393
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GenotypeQuality
all individuals: 500
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.134088417975886e-5
allele num: 10948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 5.494816e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.366e1

FS
type: SiteQuality
SIO_000300: 5.987e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 422
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1218
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GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.061254077564335e-5
allele num: 11036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.142e0

DP
type: SiteQuality
SIO_000300: 5.496397e6

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 375
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GenotypeQuality
all individuals: 396
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 562
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GenotypeQuality
all individuals: 502
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GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 2675
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542924149848794e-5
allele num: 64812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 5.497877e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.234e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.386e0

QD
type: SiteQuality
SIO_000300: 7.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 51675
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GenotypeQuality
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 2996
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64940
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.680555555555556e-5
allele num: 11520
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.161710037174721e-4
allele num: 8608
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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QD
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DP
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SIO_000300: 5.503455e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.742160278745645e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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allele num: 65058
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Latino
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: -9.0e-4

BaseQRankSum
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SIO_000300: -3.678e0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

DP
type: SiteQuality
SIO_000300: 5.506912e6

FS
type: SiteQuality
SIO_000300: 8.496e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 5.620000000000001e-1

BaseQRankSum
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QD
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DP
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.536381514257621e-5
allele num: 65088
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
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European (Finnish)
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allele frequency: 0.0e0
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QD
type: SiteQuality
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DP
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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South Asian
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European (Finnish)
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Other
type: Population
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Latino
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MQ
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DP
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QD
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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African
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DP
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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Latino
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.524855138761818e-5
allele num: 65580
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.51e0

ClippingRankSum
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QD
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MQ
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MQRankSum
type: SiteQuality
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65676
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South Asian
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allele frequency: 7.284382284382284e-5
allele num: 13728
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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FS
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SIO_000300: 4.341e0

VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 7.21e-1

MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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SIO_000300: 5.539343e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511167528032158e-5
allele num: 66174
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.556992e6

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.509e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.196531791907515e-3
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 5.571236e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.17283950617284e-5
allele num: 16200
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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South Asian
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African
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 1.5008254539997e-5
allele num: 66630
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European (Finnish)
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allele count: 0
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allele num: 6614
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MQRankSum
type: SiteQuality
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FS
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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SIO_000300: 1.2087e1

MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 8.29e-1

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -1.86e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.576442e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
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SIO_000300: -3.871e0

ReadPosRankSum
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SIO_000300: 1.88e0

ClippingRankSum
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SIO_000300: -1.857e0

MQRankSum
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VQSLOD
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
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South Asian
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East Asian
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FS
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SIO_000300: 4.562e0

ClippingRankSum
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SIO_000300: -4.39e-1

MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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SIO_000300: 5.629999999999999e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.577837e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8654
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QD
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SIO_000300: 1.11e1

InbreedingCoeff
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VQSLOD
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MQ
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DP
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BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 1.841e0

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -9.419999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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InbreedingCoeff
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QD
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49934029027228e-5
allele num: 66696
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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DP
type: SiteQuality
SIO_000300: 5.577578e6

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

FS
type: SiteQuality
SIO_000300: 4.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

QD
type: SiteQuality
SIO_000300: 1.713e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.494e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 5.577556e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.613e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1190
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.079e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 4.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: -1.12e-1

DP
type: SiteQuality
SIO_000300: 5.577791e6

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.135e0

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 1.462e1

DP
type: SiteQuality
SIO_000300: 5.578766e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 2.081e0

DP
type: SiteQuality
SIO_000300: 5.579053e6

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

GenotypeQuality
all individuals: 531
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
SIO_000300: 2.452e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 5.579594e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1490
allele frequency: 2.234419051046728e-2
allele num: 66684
num of homozygotes: 10

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 173
allele frequency: 2.615663743574237e-2
allele num: 6614
num of homozygotes: 4

Latino
type: Population
allele count: 148
allele frequency: 1.278507256392536e-2
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 138
allele frequency: 8.417713797730876e-3
allele num: 16394
num of homozygotes: 2

Other
type: Population
allele count: 18
allele frequency: 1.982378854625551e-2
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.884615384615385e-3
allele num: 10400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.457e1

DP
type: SiteQuality
SIO_000300: 5.62752e6

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.166e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.113e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

FS
type: SiteQuality
SIO_000300: 1.389e0

DP
type: SiteQuality
SIO_000300: 5.463128e6

QD
type: SiteQuality
SIO_000300: 1.556e1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 51716
bin: 9.75e1
variant carriers: 18

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.63618864292589e-3
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

DP
type: SiteQuality
SIO_000300: 5.466181e6

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.153e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 442
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 590
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GenotypeQuality
all individuals: 56
bin: 4.75e1
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GenotypeQuality
all individuals: 4541
bin: 6.25e1
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GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

FS
type: SiteQuality
SIO_000300: 1.094e0

QD
type: SiteQuality
SIO_000300: 1.572e1

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.465562e6

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.555e1

MQRankSum
type: SiteQuality
SIO_000300: -4.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e0

DP
type: SiteQuality
SIO_000300: 5.4674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.597e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.94972703821465e-4
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.46846e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.467311e6

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.642987249544627e-4
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.467311e6

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 3.682e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 5.46663e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000390050706592e-5
allele num: 66658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e0

DP
type: SiteQuality
SIO_000300: 5.467167e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.893e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 3.532e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.763e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.378e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 5.466971e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.378e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.763e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 3.532e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 5.466971e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 314
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.46638e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.693e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66624
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Latino
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Other
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MQ
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8640
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.933488012374323e-4
allele num: 10344
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66616
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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VQSLOD
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DP
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FS
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.8e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 2.595155709342561e-4
allele num: 11560
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66610
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

DP
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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African
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allele count: 6
allele frequency: 5.810575246949448e-4
allele num: 10326
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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ClippingRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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MQRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: 9.13e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

South Asian
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Latino
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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FS
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 66544
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South Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.721952167995334e-5
allele num: 10286
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele num: 66478
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East Asian
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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MQRankSum
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BaseQRankSum
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MQ
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