15-74473844-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74473844
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74473844
    reference: chr 15
allele count: 17
allele frequency: 1.731689925639197e-4
allele num: 98170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.376-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1230-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1521-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1632-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1521-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1497-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1793-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1494-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1521-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1566-45G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1638-45G>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18941
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74473850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74473850
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74473850
    reference: chr 15
allele count: 1
allele frequency: 1.042296387400721e-5
allele num: 95942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1521-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1632-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1230-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1494-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1638-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1566-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1793-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1521-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.376-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1521-51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1497-51G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/15-74474451-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474451
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474451
    reference: chr 15
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+51G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+51G>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17025
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-74474451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474451
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474451
    reference: chr 15
allele count: 4
allele frequency: 3.31746479340488e-5
allele num: 120574
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+51G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+51G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17025
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-74474452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474452
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474452
    reference: chr 15
allele count: 3
allele frequency: 2.485789569626966e-5
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+50C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+50C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25493
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-74474461-GCGAGGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474461
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474454
    reference: chr 15
allele count: 2
allele frequency: 1.655409879486161e-5
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+34_1229+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+34_1637+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+34_1520+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+34_1520+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+34_375+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+34_1631+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+34_1496+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+34_1792+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+34_1493+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+34_1520+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+34_1565+40delGCCCTCG
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19259
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: GCGAGGGC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

15-74474462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474462
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474462
    reference: chr 15
allele count: 11
allele frequency: 9.109127345600292e-5
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+40G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+40G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26085
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-74474476-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474476
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474476
    reference: chr 15
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+26T>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+26T>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41999
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-74474478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474478
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474478
    reference: chr 15
allele count: 114
allele frequency: 9.420864736215788e-4
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+24G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+24G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20048
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26838
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-74474481-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474481
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474481
    reference: chr 15
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+21G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+21G>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8091
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

15-74474485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474485
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474485
    reference: chr 15
allele count: 6
allele frequency: 4.955155839651157e-5
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+17G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+17G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42263
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

15-74474494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474494
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474494
    reference: chr 15
allele count: 3
allele frequency: 2.476514388548598e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493+8G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631+8G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1637+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-74474502-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474502
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474502
    reference: chr 15
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565G>C
  hgvsp: ENSP00000458827.1:p.Arg522Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520G>C
  hgvsp: ENSP00000410221.2:p.Arg507Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520G>C
  hgvsp: ENSP00000378537.4:p.Arg507Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375G>C
  hgvsp: ENSP00000459546.1:p.Arg126Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493G>C
  hgvsp: ENSP00000413012.2:p.Arg498Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520G>C
  hgvsp: ENSP00000326085.5:p.Arg507Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637G>C
  hgvsp: ENSP00000456609.1:p.Arg546Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631G>C
  hgvsp: ENSP00000440238.1:p.Arg544Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496G>C
  hgvsp: ENSP00000400403.3:p.Arg499Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229G>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg546Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

15-74474502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474502
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474502
    reference: chr 15
allele count: 4
allele frequency: 3.301365114474835e-5
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1637G>A
  hgvsp: ENSP00000456609.1:p.Arg546Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1631G>A
  hgvsp: ENSP00000440238.1:p.Arg544Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1792G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.375G>A
  hgvsp: ENSP00000459546.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1520G>A
  hgvsp: ENSP00000410221.2:p.Arg507Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1229G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1493G>A
  hgvsp: ENSP00000413012.2:p.Arg498Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1565G>A
  hgvsp: ENSP00000458827.1:p.Arg522Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1520G>A
  hgvsp: ENSP00000326085.5:p.Arg507Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1520G>A
  hgvsp: ENSP00000378537.4:p.Arg507Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1496G>A
  hgvsp: ENSP00000400403.3:p.Arg499Gln
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg546Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-74474503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474503
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474503
    reference: chr 15
allele count: 7
allele frequency: 5.776816808886395e-5
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1519C>T
  hgvsp: ENSP00000378537.4:p.Arg507Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1564C>T
  hgvsp: ENSP00000458827.1:p.Arg522Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1228C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1630C>T
  hgvsp: ENSP00000440238.1:p.Arg544Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1519C>T
  hgvsp: ENSP00000410221.2:p.Arg507Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1519C>T
  hgvsp: ENSP00000326085.5:p.Arg507Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1492C>T
  hgvsp: ENSP00000413012.2:p.Arg498Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1495C>T
  hgvsp: ENSP00000400403.3:p.Arg499Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.374C>T
  hgvsp: ENSP00000459546.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1636C>T
  hgvsp: ENSP00000456609.1:p.Arg546Trp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1791C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg546Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-74474503-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474503
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474503
    reference: chr 15
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1519C>G
  hgvsp: ENSP00000378537.4:p.Arg507Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1636C>G
  hgvsp: ENSP00000456609.1:p.Arg546Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1228C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1519C>G
  hgvsp: ENSP00000326085.5:p.Arg507Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1564C>G
  hgvsp: ENSP00000458827.1:p.Arg522Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1519C>G
  hgvsp: ENSP00000410221.2:p.Arg507Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1791C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1630C>G
  hgvsp: ENSP00000440238.1:p.Arg544Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1495C>G
  hgvsp: ENSP00000400403.3:p.Arg499Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.374C>G
  hgvsp: ENSP00000459546.1:p.Arg126Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1492C>G
  hgvsp: ENSP00000413012.2:p.Arg498Gly
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg546Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-74474505-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474505
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474505
    reference: chr 15
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1226A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.372A>G
  hgvsp: ENSP00000459546.1:p.Asn125Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1490A>G
  hgvsp: ENSP00000413012.2:p.Asn497Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1493A>G
  hgvsp: ENSP00000400403.3:p.Asn498Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1628A>G
  hgvsp: ENSP00000440238.1:p.Asn543Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1517A>G
  hgvsp: ENSP00000410221.2:p.Asn506Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1517A>G
  hgvsp: ENSP00000378537.4:p.Asn506Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1634A>G
  hgvsp: ENSP00000456609.1:p.Asn545Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1517A>G
  hgvsp: ENSP00000326085.5:p.Asn506Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1789A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1562A>G
  hgvsp: ENSP00000458827.1:p.Asn521Ser
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn545Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-74474513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474513
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474513
    reference: chr 15
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1620G>A
  hgvsp: ENST00000535552.1:c.1620G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1509G>A
  hgvsp: ENST00000395105.4:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1781G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1218G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1509G>A
  hgvsp: ENST00000449139.2:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1509G>A
  hgvsp: ENST00000323940.5:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.364G>A
  hgvsp: ENST00000572785.1:c.364G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1626G>A
  hgvsp: ENST00000563965.1:c.1626G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1485G>A
  hgvsp: ENST00000416286.3:c.1485G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1554G>A
  hgvsp: ENST00000574278.1:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1482G>A
  hgvsp: ENST00000423167.2:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln542Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

15-74474519-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474519
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474519
    reference: chr 15
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.358C>A
  hgvsp: ENSP00000459546.1:p.His120Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1479C>A
  hgvsp: ENSP00000400403.3:p.His493Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1503C>A
  hgvsp: ENSP00000410221.2:p.His501Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1548C>A
  hgvsp: ENSP00000458827.1:p.His516Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1503C>A
  hgvsp: ENSP00000326085.5:p.His501Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1212C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1476C>A
  hgvsp: ENSP00000413012.2:p.His492Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1503C>A
  hgvsp: ENSP00000378537.4:p.His501Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1775C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1614C>A
  hgvsp: ENSP00000440238.1:p.His538Gln
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1620C>A
  hgvsp: ENSP00000456609.1:p.His540Gln
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His540Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-74474530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474530
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474530
    reference: chr 15
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1201C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1764C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1537C>T
  hgvsp: ENSP00000458827.1:p.His513Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1492C>T
  hgvsp: ENSP00000410221.2:p.His498Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1492C>T
  hgvsp: ENSP00000326085.5:p.His498Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1609C>T
  hgvsp: ENSP00000456609.1:p.His537Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1603C>T
  hgvsp: ENSP00000440238.1:p.His535Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1492C>T
  hgvsp: ENSP00000378537.4:p.His498Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1465C>T
  hgvsp: ENSP00000413012.2:p.His489Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1468C>T
  hgvsp: ENSP00000400403.3:p.His490Tyr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.347C>T
  hgvsp: ENSP00000459546.1:p.His117Tyr
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His537Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

15-74474545-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474545
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474545
    reference: chr 15
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1594G>C
  hgvsp: ENSP00000456609.1:p.Val532Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1477G>C
  hgvsp: ENSP00000378537.4:p.Val493Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1453G>C
  hgvsp: ENSP00000400403.3:p.Val485Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1749G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1477G>C
  hgvsp: ENSP00000410221.2:p.Val493Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1477G>C
  hgvsp: ENSP00000326085.5:p.Val493Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.332G>C
  hgvsp: ENSP00000459546.1:p.Val112Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1450G>C
  hgvsp: ENSP00000413012.2:p.Val484Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1522G>C
  hgvsp: ENSP00000458827.1:p.Val508Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1588G>C
  hgvsp: ENSP00000440238.1:p.Val530Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1186G>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val532Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-74474549-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474549
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474549
    reference: chr 15
allele count: 3
allele frequency: 2.474063566939913e-5
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1473T>C
  hgvsp: ENST00000449139.2:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1182T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1745T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1518T>C
  hgvsp: ENST00000574278.1:c.1518T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.328T>C
  hgvsp: ENST00000572785.1:c.328T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1473T>C
  hgvsp: ENST00000395105.4:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1446T>C
  hgvsp: ENST00000423167.2:c.1446T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1584T>C
  hgvsp: ENST00000535552.1:c.1584T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1473T>C
  hgvsp: ENST00000323940.5:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1449T>C
  hgvsp: ENST00000416286.3:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1590T>C
  hgvsp: ENST00000563965.1:c.1590T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His530His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-74474550-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474550
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474550
    reference: chr 15
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1517A>T
  hgvsp: ENSP00000458827.1:p.His506Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1445A>T
  hgvsp: ENSP00000413012.2:p.His482Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1472A>T
  hgvsp: ENSP00000410221.2:p.His491Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1448A>T
  hgvsp: ENSP00000400403.3:p.His483Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1472A>T
  hgvsp: ENSP00000326085.5:p.His491Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1589A>T
  hgvsp: ENSP00000456609.1:p.His530Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.327A>T
  hgvsp: ENSP00000459546.1:p.His110Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1583A>T
  hgvsp: ENSP00000440238.1:p.His528Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1744A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1472A>T
  hgvsp: ENSP00000378537.4:p.His491Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1181A>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His530Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-74474553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474553
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474553
    reference: chr 15
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1469C>T
  hgvsp: ENSP00000326085.5:p.Ala490Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1178C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1445C>T
  hgvsp: ENSP00000400403.3:p.Ala482Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1741C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.324C>T
  hgvsp: ENSP00000459546.1:p.Ala109Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1469C>T
  hgvsp: ENSP00000410221.2:p.Ala490Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1586C>T
  hgvsp: ENSP00000456609.1:p.Ala529Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1442C>T
  hgvsp: ENSP00000413012.2:p.Ala481Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1469C>T
  hgvsp: ENSP00000378537.4:p.Ala490Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1514C>T
  hgvsp: ENSP00000458827.1:p.Ala505Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1580C>T
  hgvsp: ENSP00000440238.1:p.Ala527Val
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala529Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-74474564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474564
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474564
    reference: chr 15
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1730G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1458G>A
  hgvsp: ENST00000323940.5:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1434G>A
  hgvsp: ENST00000416286.3:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1575G>A
  hgvsp: ENST00000563965.1:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1431G>A
  hgvsp: ENST00000423167.2:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-1G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1503G>A
  hgvsp: ENST00000574278.1:c.1503G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1458G>A
  hgvsp: ENST00000449139.2:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1458G>A
  hgvsp: ENST00000395105.4:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1167G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1569G>A
  hgvsp: ENST00000535552.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.314-1G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-74474567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474567
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474567
    reference: chr 15
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1431G>A
  hgvsp: ENST00000416286.3:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1727G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1428G>A
  hgvsp: ENST00000423167.2:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-4G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1455G>A
  hgvsp: ENST00000449139.2:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1164G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1566G>A
  hgvsp: ENST00000535552.1:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1572G>A
  hgvsp: ENST00000563965.1:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1455G>A
  hgvsp: ENST00000323940.5:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1455G>A
  hgvsp: ENST00000395105.4:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1500G>A
  hgvsp: ENST00000574278.1:c.1500G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.314-4G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-74474582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474582
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474582
    reference: chr 15
allele count: 3
allele frequency: 2.474553343121567e-5
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-19C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1149C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1440C>T
  hgvsp: ENST00000449139.2:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1413C>T
  hgvsp: ENST00000423167.2:c.1413C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1557C>T
  hgvsp: ENST00000563965.1:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1440C>T
  hgvsp: ENST00000395105.4:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1416C>T
  hgvsp: ENST00000416286.3:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.558C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1440C>T
  hgvsp: ENST00000323940.5:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1485C>T
  hgvsp: ENST00000574278.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1551C>T
  hgvsp: ENST00000535552.1:c.1551C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1712C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala519Ala
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-74474585-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474585
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474585
    reference: chr 15
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-22G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1554G>C
  hgvsp: ENSP00000456609.1:p.Leu518Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1437G>C
  hgvsp: ENSP00000378537.4:p.Leu479Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1482G>C
  hgvsp: ENSP00000458827.1:p.Leu494Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1146G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1437G>C
  hgvsp: ENSP00000410221.2:p.Leu479Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1709G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1410G>C
  hgvsp: ENSP00000413012.2:p.Leu470Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1548G>C
  hgvsp: ENSP00000440238.1:p.Leu516Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.555G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1413G>C
  hgvsp: ENSP00000400403.3:p.Leu471Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1437G>C
  hgvsp: ENSP00000326085.5:p.Leu479Phe
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu518Phe
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-74474596-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474596
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474596
    reference: chr 15
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1543T>G
  hgvsp: ENSP00000456609.1:p.Trp515Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.544T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1426T>G
  hgvsp: ENSP00000326085.5:p.Trp476Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1698T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1426T>G
  hgvsp: ENSP00000410221.2:p.Trp476Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1537T>G
  hgvsp: ENSP00000440238.1:p.Trp513Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1426T>G
  hgvsp: ENSP00000378537.4:p.Trp476Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1399T>G
  hgvsp: ENSP00000413012.2:p.Trp467Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1135T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1471T>G
  hgvsp: ENSP00000458827.1:p.Trp491Gly
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-33T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1402T>G
  hgvsp: ENSP00000400403.3:p.Trp468Gly
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp515Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

15-74474606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474606
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474606
    reference: chr 15
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-43C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-3C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-3C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1536-3C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-74474614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474614
    reference: chr 15
allele count: 10
allele frequency: 8.24973600844773e-5
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-11C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-51C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-74474622-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474622
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474622
    reference: chr 15
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-59C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-19C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-19C>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

15-74474623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474623
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474623
    reference: chr 15
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.314-60C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-20C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-20C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

15-74474626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474626
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474626
    reference: chr 15
allele count: 728
allele frequency: 6.006798904254266e-3
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+58C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-23C>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-23C>G
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27385
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 19581
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-74474628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474628
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474628
    reference: chr 15
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+56G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-25G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-25G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-74474629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474629
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474629
    reference: chr 15
allele count: 3
allele frequency: 2.475696908679793e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+55C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-26C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-26C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-74474630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474630
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474630
    reference: chr 15
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+54G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-27G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-27G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-74474635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474635
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474635
    reference: chr 15
allele count: 3
allele frequency: 2.476228209191759e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+49T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-32T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-32T>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-74474637-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474637
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474637
    reference: chr 15
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+47G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-34G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-34G>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27746
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-74474638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474638
    reference: chr 15
allele count: 7
allele frequency: 5.779106054851973e-5
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+46C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-35C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-35C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/15-74474641-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474641
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474641
    reference: chr 15
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1464-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1530-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+43G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1419-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.537-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1691-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1536-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1419-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1395-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1392-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1419-38G>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1128-38G>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-74474656-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474656
    reference: chr 15
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+28A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+28A>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

15-74474658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474658
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474658
    reference: chr 15
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+26T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+26T>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

15-74474667-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474667
    reference: chr 15
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+17A>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+17A>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

15-74474670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474670
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474670
    reference: chr 15
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+14G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+14G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

15-74474673-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474672
    reference: chr 15
allele count: 149
allele frequency: 1.234956735072771e-3
allele num: 120652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+10delA
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+10delA
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27567
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19405
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: GT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-74474679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474679
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474679
    reference: chr 15
allele count: 1
allele frequency: 8.312690152787244e-6
allele num: 120298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+5G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+5G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1535+5G>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-74474680-TCAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474680
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474677
    reference: chr 15
allele count: 2
allele frequency: 1.663367654152597e-5
allele num: 120238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1391+1_1391+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.313+1_313+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1463+1_1463+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1418+1_1418+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1535+1_1535+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1529+1_1529+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1127+1_1127+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1418+1_1418+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1394+1_1394+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1418+1_1418+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1690+1_1690+3delGTG
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.536+1_536+3delGTG
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 19201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1535+1_1535+3delGTG
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: TCAC
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

15-74474686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474686
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474686
    reference: chr 15
allele count: 357
allele frequency: 2.976488244122061e-3
allele num: 119940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1392G>A
  hgvsp: ENST00000416286.3:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1416G>A
  hgvsp: ENST00000323940.5:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1527G>A
  hgvsp: ENST00000535552.1:c.1527G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1416G>A
  hgvsp: ENST00000395105.4:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1416G>A
  hgvsp: ENST00000449139.2:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1461G>A
  hgvsp: ENST00000574278.1:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.311G>A
  hgvsp: ENSP00000459546.1:p.Val105Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1688G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.534G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1533G>A
  hgvsp: ENST00000563965.1:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1389G>A
  hgvsp: ENST00000423167.2:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1125G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val105Met
num of homozygotes: 6
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

15-74474687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474687
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474687
    reference: chr 15
allele count: 3
allele frequency: 2.504884524823406e-5
allele num: 119766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1415C>T
  hgvsp: ENSP00000326085.5:p.Ser472Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1526C>T
  hgvsp: ENSP00000440238.1:p.Ser509Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1388C>T
  hgvsp: ENSP00000413012.2:p.Ser463Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1391C>T
  hgvsp: ENSP00000400403.3:p.Ser464Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1415C>T
  hgvsp: ENSP00000410221.2:p.Ser472Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1415C>T
  hgvsp: ENSP00000378537.4:p.Ser472Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1460C>T
  hgvsp: ENSP00000458827.1:p.Ser487Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1687C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.310C>T
  hgvsp: ENST00000572785.1:c.310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1532C>T
  hgvsp: ENSP00000456609.1:p.Ser511Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1124C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.533C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser511Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-74474690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474690
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474690
    reference: chr 15
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.530C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1121C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1412C>T
  hgvsp: ENSP00000378537.4:p.Ser471Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.307C>T
  hgvsp: ENST00000572785.1:c.307C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1412C>T
  hgvsp: ENSP00000410221.2:p.Ser471Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1523C>T
  hgvsp: ENSP00000440238.1:p.Ser508Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1529C>T
  hgvsp: ENSP00000456609.1:p.Ser510Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1684C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1457C>T
  hgvsp: ENSP00000458827.1:p.Ser486Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1385C>T
  hgvsp: ENSP00000413012.2:p.Ser462Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1412C>T
  hgvsp: ENSP00000326085.5:p.Ser471Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1388C>T
  hgvsp: ENSP00000400403.3:p.Ser463Phe
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser510Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

15-74474699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474699
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474699
    reference: chr 15
allele count: 1
allele frequency: 8.461668641056017e-6
allele num: 118180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1379C>T
  hgvsp: ENSP00000400403.3:p.Ser460Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1520C>T
  hgvsp: ENSP00000456609.1:p.Ser507Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1403C>T
  hgvsp: ENSP00000378537.4:p.Ser468Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1403C>T
  hgvsp: ENSP00000326085.5:p.Ser468Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1403C>T
  hgvsp: ENSP00000410221.2:p.Ser468Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1112C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.298C>T
  hgvsp: ENST00000572785.1:c.298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1448C>T
  hgvsp: ENSP00000458827.1:p.Ser483Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1675C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1376C>T
  hgvsp: ENSP00000413012.2:p.Ser459Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.521C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1514C>T
  hgvsp: ENSP00000440238.1:p.Ser505Phe
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser507Phe
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

15-74474702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474702
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474702
    reference: chr 15
allele count: 8
allele frequency: 6.789903413623942e-5
allele num: 117822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1400G>A
  hgvsp: ENSP00000378537.4:p.Arg467His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1109G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1373G>A
  hgvsp: ENSP00000413012.2:p.Arg458His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1445G>A
  hgvsp: ENSP00000458827.1:p.Arg482His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1400G>A
  hgvsp: ENSP00000326085.5:p.Arg467His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1511G>A
  hgvsp: ENSP00000440238.1:p.Arg504His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1517G>A
  hgvsp: ENSP00000456609.1:p.Arg506His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1672G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1400G>A
  hgvsp: ENSP00000410221.2:p.Arg467His
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.518G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.295G>A
  hgvsp: ENST00000572785.1:c.295G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1376G>A
  hgvsp: ENSP00000400403.3:p.Arg459His
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18292
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg506His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-74474703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474703
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474703
    reference: chr 15
allele count: 3
allele frequency: 2.557457546204733e-5
allele num: 117304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1399C>T
  hgvsp: ENSP00000410221.2:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1372C>T
  hgvsp: ENSP00000413012.2:p.Arg458Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1375C>T
  hgvsp: ENSP00000400403.3:p.Arg459Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1399C>T
  hgvsp: ENSP00000326085.5:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.294C>T
  hgvsp: ENSP00000459546.1:p.Pro99Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1444C>T
  hgvsp: ENSP00000458827.1:p.Arg482Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1399C>T
  hgvsp: ENSP00000378537.4:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.517C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1108C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1510C>T
  hgvsp: ENSP00000440238.1:p.Arg504Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1516C>T
  hgvsp: ENSP00000456609.1:p.Arg506Cys
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1671C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg506Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

15-74474710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474710
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474710
    reference: chr 15
allele count: 1
allele frequency: 8.596087061169755e-6
allele num: 116332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1392G>A
  hgvsp: ENST00000449139.2:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1503G>A
  hgvsp: ENST00000535552.1:c.1503G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1437G>A
  hgvsp: ENST00000574278.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1509G>A
  hgvsp: ENST00000563965.1:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.287G>A
  hgvsp: ENSP00000459546.1:p.Ala97Thr
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1392G>A
  hgvsp: ENST00000395105.4:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1392G>A
  hgvsp: ENST00000323940.5:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1368G>A
  hgvsp: ENST00000416286.3:c.1368G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.510G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1664G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1365G>A
  hgvsp: ENST00000423167.2:c.1365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1101G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala97Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-74474711-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474711
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474711
    reference: chr 15
allele count: 49
allele frequency: 4.212299915754001e-4
allele num: 116326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.509T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1391T>G
  hgvsp: ENSP00000410221.2:p.Leu464Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1100T>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1391T>G
  hgvsp: ENSP00000378537.4:p.Leu464Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1364T>G
  hgvsp: ENSP00000413012.2:p.Leu455Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.286T>G
  hgvsp: ENST00000572785.1:c.286T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1436T>G
  hgvsp: ENSP00000458827.1:p.Leu479Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1508T>G
  hgvsp: ENSP00000456609.1:p.Leu503Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1391T>G
  hgvsp: ENSP00000326085.5:p.Leu464Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1502T>G
  hgvsp: ENSP00000440238.1:p.Leu501Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1367T>G
  hgvsp: ENSP00000400403.3:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1663T>G
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18229
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24202
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu503Arg
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-74474717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474717
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474717
    reference: chr 15
allele count: 1
allele frequency: 8.68975825092546e-6
allele num: 115078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.280A>G
  hgvsp: ENST00000572785.1:c.280A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1385A>G
  hgvsp: ENSP00000410221.2:p.Asn462Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1358A>G
  hgvsp: ENSP00000413012.2:p.Asn453Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1361A>G
  hgvsp: ENSP00000400403.3:p.Asn454Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1430A>G
  hgvsp: ENSP00000458827.1:p.Asn477Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1657A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1385A>G
  hgvsp: ENSP00000326085.5:p.Asn462Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1496A>G
  hgvsp: ENSP00000440238.1:p.Asn499Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1502A>G
  hgvsp: ENSP00000456609.1:p.Asn501Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1385A>G
  hgvsp: ENSP00000378537.4:p.Asn462Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.503A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1094A>G
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn501Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

15-74474725-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474725
    reference: chr 15
allele count: 2
allele frequency: 1.775599708801648e-5
allele num: 112638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1353T>C
  hgvsp: ENST00000416286.3:c.1353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1377T>C
  hgvsp: ENST00000449139.2:c.1377T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1377T>C
  hgvsp: ENST00000323940.5:c.1377T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1488T>C
  hgvsp: ENST00000535552.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1422T>C
  hgvsp: ENST00000574278.1:c.1422T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1350T>C
  hgvsp: ENST00000423167.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1494T>C
  hgvsp: ENST00000563965.1:c.1494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1649T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1086T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1377T>C
  hgvsp: ENST00000395105.4:c.1377T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.495T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.272T>C
  hgvsp: ENSP00000459546.1:p.Trp92Arg
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21876
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp92Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-74474726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474726
    reference: chr 15
allele count: 1
allele frequency: 8.911861687906604e-6
allele num: 112210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1376A>G
  hgvsp: ENSP00000378537.4:p.His459Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1376A>G
  hgvsp: ENSP00000410221.2:p.His459Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1376A>G
  hgvsp: ENSP00000326085.5:p.His459Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1648A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1085A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1421A>G
  hgvsp: ENSP00000458827.1:p.His474Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.494A>G
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1349A>G
  hgvsp: ENSP00000413012.2:p.His450Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1493A>G
  hgvsp: ENSP00000456609.1:p.His498Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1352A>G
  hgvsp: ENSP00000400403.3:p.His451Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1487A>G
  hgvsp: ENSP00000440238.1:p.His496Arg
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.271A>G
  hgvsp: ENST00000572785.1:c.271A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His498Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

15-74474729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474729
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474729
    reference: chr 15
allele count: 1
allele frequency: 9.016807328860996e-6
allele num: 110904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1484T>C
  hgvsp: ENSP00000440238.1:p.Leu495Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1082T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1645T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1418T>C
  hgvsp: ENSP00000458827.1:p.Leu473Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1490T>C
  hgvsp: ENSP00000456609.1:p.Leu497Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.491T>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1349T>C
  hgvsp: ENSP00000400403.3:p.Leu450Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1373T>C
  hgvsp: ENSP00000378537.4:p.Leu458Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1373T>C
  hgvsp: ENSP00000410221.2:p.Leu458Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1346T>C
  hgvsp: ENSP00000413012.2:p.Leu449Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.268T>C
  hgvsp: ENST00000572785.1:c.268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1373T>C
  hgvsp: ENSP00000326085.5:p.Leu458Pro
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu497Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

15-74474730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474730
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474730
    reference: chr 15
allele count: 1
allele frequency: 9.103322712790168e-6
allele num: 109850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1345C>T
  hgvsp: ENSP00000413012.2:p.Leu449Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1372C>T
  hgvsp: ENSP00000326085.5:p.Leu458Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1417C>T
  hgvsp: ENSP00000458827.1:p.Leu473Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1348C>T
  hgvsp: ENSP00000400403.3:p.Leu450Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1081C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1372C>T
  hgvsp: ENSP00000378537.4:p.Leu458Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.490C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.267C>T
  hgvsp: ENSP00000459546.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1483C>T
  hgvsp: ENSP00000440238.1:p.Leu495Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1372C>T
  hgvsp: ENSP00000410221.2:p.Leu458Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1489C>T
  hgvsp: ENSP00000456609.1:p.Leu497Phe
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1644C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu497Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-74474735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474735
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474735
    reference: chr 15
allele count: 3
allele frequency: 2.778137906765692e-5
allele num: 107986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.485C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1340C>T
  hgvsp: ENSP00000413012.2:p.Pro447Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1367C>T
  hgvsp: ENSP00000326085.5:p.Pro456Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1484C>T
  hgvsp: ENSP00000456609.1:p.Pro495Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1076C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1343C>T
  hgvsp: ENSP00000400403.3:p.Pro448Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1412C>T
  hgvsp: ENSP00000458827.1:p.Pro471Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1367C>T
  hgvsp: ENSP00000378537.4:p.Pro456Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1367C>T
  hgvsp: ENSP00000410221.2:p.Pro456Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1478C>T
  hgvsp: ENSP00000440238.1:p.Pro493Leu
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.262C>T
  hgvsp: ENST00000572785.1:c.262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1639C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro495Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-74474737-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474737
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474737
    reference: chr 15
allele count: 42
allele frequency: 3.93472110322085e-4
allele num: 106742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1338G>C
  hgvsp: ENSP00000413012.2:p.Met446Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1074G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1365G>C
  hgvsp: ENSP00000326085.5:p.Met455Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1341G>C
  hgvsp: ENSP00000400403.3:p.Met447Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1410G>C
  hgvsp: ENSP00000458827.1:p.Met470Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.260G>C
  hgvsp: ENSP00000459546.1:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1482G>C
  hgvsp: ENSP00000456609.1:p.Met494Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1365G>C
  hgvsp: ENSP00000410221.2:p.Met455Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1476G>C
  hgvsp: ENSP00000440238.1:p.Met492Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1637G>C
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1365G>C
  hgvsp: ENSP00000378537.4:p.Met455Ile
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.483G>C
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17912
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met494Ile
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-74474753-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474753
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474753
    reference: chr 15
allele count: 5
allele frequency: 5.098295130108492e-5
allele num: 98072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1349C>A
  hgvsp: ENSP00000378537.4:p.Ala450Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1349C>A
  hgvsp: ENSP00000410221.2:p.Ala450Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1322C>A
  hgvsp: ENSP00000413012.2:p.Ala441Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.467C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1466C>A
  hgvsp: ENSP00000456609.1:p.Ala489Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1394C>A
  hgvsp: ENSP00000458827.1:p.Ala465Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1621C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1325C>A
  hgvsp: ENSP00000400403.3:p.Ala442Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1349C>A
  hgvsp: ENSP00000326085.5:p.Ala450Asp
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.244C>A
  hgvsp: ENST00000572785.1:c.244C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1058C>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1460C>A
  hgvsp: ENSP00000440238.1:p.Ala487Asp
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12228
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala489Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

15-74474759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474759
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474759
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 95110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1388C>T
  hgvsp: ENSP00000458827.1:p.Ala463Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1343C>T
  hgvsp: ENSP00000378537.4:p.Ala448Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1615C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1052C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1454C>T
  hgvsp: ENSP00000440238.1:p.Ala485Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1343C>T
  hgvsp: ENSP00000410221.2:p.Ala448Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.238C>T
  hgvsp: ENST00000572785.1:c.238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1319C>T
  hgvsp: ENSP00000400403.3:p.Ala440Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1316C>T
  hgvsp: ENSP00000413012.2:p.Ala439Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1460C>T
  hgvsp: ENSP00000456609.1:p.Ala487Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1343C>T
  hgvsp: ENSP00000326085.5:p.Ala448Val
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.461C>T
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala487Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

15-74474761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474761
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474761
    reference: chr 15
allele count: 8
allele frequency: 8.512268306697027e-5
allele num: 93982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1341G>A
  hgvsp: ENST00000449139.2:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1317G>A
  hgvsp: ENST00000416286.3:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1341G>A
  hgvsp: ENST00000395105.4:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1386G>A
  hgvsp: ENST00000574278.1:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1613G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.236G>A
  hgvsp: ENSP00000459546.1:p.Gly80Ser
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1458G>A
  hgvsp: ENST00000563965.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1314G>A
  hgvsp: ENST00000423167.2:c.1314G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1452G>A
  hgvsp: ENST00000535552.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1341G>A
  hgvsp: ENST00000323940.5:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.459G>A
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1050G>A
  variant of: http://identifiers.org/hgnc/30650
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11877
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly80Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

15-74474762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74474762
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 74474762
    reference: chr 15
allele count: 2
allele frequency: 2.152157537931776e-5
allele num: 92930
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000456609
  ensembl transcript: ENST00000563965
  gene symbol: STRA6
  hgvsc: ENST00000563965.1:c.1457C>T
  hgvsp: ENSP00000456609.1:p.Thr486Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000574439
  gene symbol: STRA6
  hgvsc: ENST00000574439.1:n.1612C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000400403
  ensembl transcript: ENST00000416286
  gene symbol: STRA6
  hgvsc: ENST00000416286.3:c.1316C>T
  hgvsp: ENSP00000400403.3:p.Thr439Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000378537
  ensembl transcript: ENST00000395105
  gene symbol: STRA6
  hgvsc: ENST00000395105.4:c.1340C>T
  hgvsp: ENSP00000378537.4:p.Thr447Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000440238
  ensembl transcript: ENST00000535552
  gene symbol: STRA6
  hgvsc: ENST00000535552.1:c.1451C>T
  hgvsp: ENSP00000440238.1:p.Thr484Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000545137
  gene symbol: STRA6
  hgvsc: ENST00000545137.1:n.1049C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000459546
  ensembl transcript: ENST00000572785
  gene symbol: STRA6
  hgvsc: ENST00000572785.1:c.235C>T
  hgvsp: ENST00000572785.1:c.235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000458827
  ensembl transcript: ENST00000574278
  gene symbol: STRA6
  hgvsc: ENST00000574278.1:c.1385C>T
  hgvsp: ENSP00000458827.1:p.Thr462Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137868
  ensembl transcript: ENST00000575272
  gene symbol: STRA6
  hgvsc: ENST00000575272.1:n.458C>T
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000410221
  ensembl transcript: ENST00000449139
  gene symbol: STRA6
  hgvsc: ENST00000449139.2:c.1340C>T
  hgvsp: ENSP00000410221.2:p.Thr447Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000326085
  ensembl transcript: ENST00000323940
  gene symbol: STRA6
  hgvsc: ENST00000323940.5:c.1340C>T
  hgvsp: ENSP00000326085.5:p.Thr447Met
  variant of: http://identifiers.org/hgnc/30650
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137868
  ensembl protein: ENSP00000413012
  ensembl transcript: ENST00000423167
  gene symbol: STRA6
  hgvsc: ENST00000423167.2:c.1313C>T
  hgvsp: ENSP00000413012.2:p.Thr438Met
  variant of: http://identifiers.org/hgnc/30650
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr486Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-74474767-T-C
type: Variant
allele count: 3
allele frequency: 3.281126957739085e-5
allele num: 91432
alternate allele: C
canonical: false
consequence: missense
filter: PASS
hgvs: p.Asn78Asp
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 6036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5219
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13941
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 2.603369065849924e-3
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.15128e6

QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.103e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 4424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6041
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2353
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.864349901189455e-5
allele num: 53638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

QD
type: SiteQuality
SIO_000300: 2.472e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.146815e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 738
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.319e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.641665e6

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 9.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532680627322999e-5
allele num: 66186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.524855138761818e-4
allele num: 6558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 9.85e0

VQSLOD
type: SiteQuality
SIO_000300: -1.319e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.641665e6

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.446e0

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

DP
type: SiteQuality
SIO_000300: 1.645193e6

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 502
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39767
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

QD
type: SiteQuality
SIO_000300: 5.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.433e0

FS
type: SiteQuality
SIO_000300: 1.1469e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 1.658758e6

MQ
type: SiteQuality
SIO_000300: 5.568e1

GenotypeQuality
all individuals: 579
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 695
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 265
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 2827
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7893
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variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.527108955482419e-4
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.660911e6

FS
type: SiteQuality
SIO_000300: 2.059e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.476e0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.232e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2284
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2193
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
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GenotypeQuality
all individuals: 8079
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.478e0

QD
type: SiteQuality
SIO_000300: 1.144e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.676294e6

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 2189
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GenotypeQuality
all individuals: 41995
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 9.75e1
variant carriers: 114

GenotypeQuality
all individuals: 2276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.559270516717325e-4
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.293738905436712e-3
allele num: 66474
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.298026998961578e-3
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.792624058698591e-4
allele num: 10358
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.812e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 1.679676e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

DP
type: SiteQuality
SIO_000300: 1.677505e6

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.185e0

QD
type: SiteQuality
SIO_000300: 2.93e0

GenotypeQuality
all individuals: 2781
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.019030153624147e-5
allele num: 66526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.944e0

DP
type: SiteQuality
SIO_000300: 1.678892e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

FS
type: SiteQuality
SIO_000300: 3.009e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 42297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.680622e6

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

Latino
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66586
num of homozygotes: 0

European (Finnish)
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Latino
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Other
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African
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East Asian
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South Asian
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Latino
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East Asian
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Other
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African
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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SIO_000300: -3.795e0

ClippingRankSum
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SIO_000300: 1.07e-1

DP
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SIO_000300: 1.683734e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.85e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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BaseQRankSum
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SIO_000300: -3.757e0

ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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MQ
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SIO_000300: 5.96e1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
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SIO_000300: 2.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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SIO_000300: 5.46e0

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele num: 8644
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South Asian
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European (Non-Finnish)
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African
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Other
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Latino
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VQSLOD
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QD
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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South Asian
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Latino
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Other
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European (Finnish)
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DP
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Latino
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Other
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQ
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.303e0

VQSLOD
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SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 2.116e0

MQRankSum
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DP
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SIO_000300: 1.682771e6

InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.993e1

ClippingRankSum
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BaseQRankSum
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SIO_000300: -4.39e-1

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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FS
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VQSLOD
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DP
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SIO_000300: 1.682452e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66610
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Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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num of homozygotes: 0

Other
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FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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SIO_000300: 1.681488e6

BaseQRankSum
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SIO_000300: 1.44e0

VQSLOD
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SIO_000300: -2.741e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66618
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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ReadPosRankSum
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SIO_000300: -3.95e-1

MQ
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BaseQRankSum
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MQRankSum
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QD
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 3.2e-3

VQSLOD
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SIO_000300: 1.02e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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African
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allele num: 10388
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East Asian
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European (Non-Finnish)
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allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

Other
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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East Asian
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MQ
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DP
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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African
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 47

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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.347449470644851e-3
allele num: 10390
num of homozygotes: 0

Latino
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allele count: 69
allele frequency: 5.970924195223261e-3
allele num: 11556
num of homozygotes: 0

South Asian
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allele count: 43
allele frequency: 2.604482132041187e-3
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 16
allele frequency: 2.430872075357034e-3
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.651884700665188e-3
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 580
allele frequency: 8.706617028941996e-3
allele num: 66616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
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SIO_000300: 2.0e-4

VQSLOD
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SIO_000300: 4.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
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SIO_000300: 1.361e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
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SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

DP
type: SiteQuality
SIO_000300: 1.71009e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 461
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
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SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

QD
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SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.676581e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 2481
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1153
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

QD
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.137e0

MQRankSum
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SIO_000300: -3.28e-1

DP
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SIO_000300: 1.676648e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1154
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GenotypeQuality
all individuals: 2229
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
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SIO_000300: 1.416e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
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SIO_000300: 1.24e0

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.482e0

BaseQRankSum
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SIO_000300: -1.886e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

DP
type: SiteQuality
SIO_000300: 1.676528e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596952908587258e-4
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.327e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.166e0

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

DP
type: SiteQuality
SIO_000300: 1.676126e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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DP
type: SiteQuality
SIO_000300: 1.676311e6

QD
type: SiteQuality
SIO_000300: 1.589e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQRankSum
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 3.19e0

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.047851264858275e-4
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 2.222222222222222e-3
allele num: 900
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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FS
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: 4.06e-1

FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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QD
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BaseQRankSum
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SIO_000300: -2.032e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.672997e6

BaseQRankSum
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SIO_000300: -1.055e0

FS
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SIO_000300: 0.0e0

VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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SIO_000300: -1.318e0

InbreedingCoeff
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SIO_000300: 1.4e-3

MQRankSum
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QD
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SIO_000300: 1.371e1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 7.053e0

ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
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FS
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SIO_000300: 8.06e0

ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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SIO_000300: 8.3e-1

QD
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MQRankSum
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SIO_000300: 5.94e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

Other
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MQRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeDepth
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 11496
num of homozygotes: 0

South Asian
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allele frequency: 1.763346710446309e-3
allele num: 16446
num of homozygotes: 0

African
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allele frequency: 8.697332817935833e-4
allele num: 10348
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East Asian
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allele frequency: 1.275806077476224e-2
allele num: 8622
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European (Finnish)
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66370
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
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variant carriers: 2

GenotypeQuality
all individuals: 2032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021330593993595e-5
allele num: 66196
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

FS
type: SiteQuality
SIO_000300: 1.3113e1

DP
type: SiteQuality
SIO_000300: 1.656573e6

QD
type: SiteQuality
SIO_000300: 1.503e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 22
bin: 8.25e1
variant carriers: 5

GenotypeDepth
all individuals: 60
bin: 7.25e1
variant carriers: 5

GenotypeDepth
all individuals: 1609
bin: 3.75e1
variant carriers: 56

GenotypeDepth
all individuals: 1170
bin: 4.25e1
variant carriers: 42

GenotypeDepth
all individuals: 27112
bin: 2.75e1
variant carriers: 31

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1964
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variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
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variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
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variant carriers: 349

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
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variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7663
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 320
allele frequency: 3.108003108003108e-2
allele num: 10296
num of homozygotes: 6

Other
type: Population
allele count: 2
allele frequency: 2.277904328018223e-3
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.191444600280505e-3
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.059739001423078e-4
allele num: 66054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223091976516634e-4
allele num: 16352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 1.655688e6

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 391
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variant carriers: 0

GenotypeDepth
all individuals: 591
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1456
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2071
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variant carriers: 0

GenotypeQuality
all individuals: 1962
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GenotypeQuality
all individuals: 422
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GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 2331
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variant carriers: 3

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
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GenotypeQuality
all individuals: 604
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GenotypeQuality
all individuals: 193
bin: 5.75e1
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GenotypeQuality
all individuals: 1038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41624
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 7682
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.547797350150077e-5
allele num: 65966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.544e1

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

FS
type: SiteQuality
SIO_000300: 1.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.765e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.644203e6

GenotypeDepth
all individuals: 392
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 2050
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variant carriers: 0

GenotypeQuality
all individuals: 41389
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 273
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variant carriers: 0

GenotypeQuality
all individuals: 1731
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variant carriers: 0

GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 130
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GenotypeQuality
all individuals: 7624
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variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 1032
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 1929
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variant carriers: 0

GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 2329
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variant carriers: 1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137981831573779e-5
allele num: 16292
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 5.895e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.761e0

DP
type: SiteQuality
SIO_000300: 1.63755e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

GenotypeDepth
all individuals: 21
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 25983
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variant carriers: 0

GenotypeQuality
all individuals: 7162
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 999
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variant carriers: 0

GenotypeQuality
all individuals: 1807
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variant carriers: 0

GenotypeQuality
all individuals: 486
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GenotypeQuality
all individuals: 39546
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 1940
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 530
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GenotypeQuality
all individuals: 2314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 412
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variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534118802160039e-5
allele num: 65184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.071e0

DP
type: SiteQuality
SIO_000300: 1.608473e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.144e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
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variant carriers: 0

GenotypeDepth
all individuals: 25628
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 432
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GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 7048
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GenotypeQuality
all individuals: 1922
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GenotypeQuality
all individuals: 538
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
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GenotypeQuality
all individuals: 590
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GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
all individuals: 1773
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 581
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GenotypeQuality
all individuals: 39201
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GenotypeQuality
all individuals: 514
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GenotypeQuality
all individuals: 990
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GenotypeQuality
all individuals: 2317
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.615526631588664e-5
allele num: 64998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.958349861166203e-4
allele num: 10084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 1.599904e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.597e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
all individuals: 25208
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variant carriers: 1

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 804
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 563
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GenotypeQuality
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GenotypeQuality
all individuals: 399
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GenotypeQuality
all individuals: 748
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GenotypeQuality
all individuals: 310
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GenotypeQuality
all individuals: 38076
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GenotypeQuality
all individuals: 598
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 588
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 971
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GenotypeQuality
all individuals: 3659
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 2310
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.24470998257406e-4
allele num: 16068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545021939311538e-5
allele num: 64724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

FS
type: SiteQuality
SIO_000300: 6.949e0

DP
type: SiteQuality
SIO_000300: 1.589407e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 9.52e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e-1

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 6164
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variant carriers: 0

GenotypeDepth
all individuals: 1452
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variant carriers: 1

GenotypeQuality
all individuals: 2305
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 4605
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GenotypeQuality
all individuals: 582
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GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 678
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GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 6676
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64230
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.092562284051645e-5
allele num: 10998
num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.948e1

VQSLOD
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SIO_000300: -7.820000000000001e-2

FS
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SIO_000300: 6.118e0

MQRankSum
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SIO_000300: 3.5e-1

ReadPosRankSum
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SIO_000300: -1.183e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 2
allele frequency: 2.005615724027276e-4
allele num: 9972
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64230
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 47
allele frequency: 4.271950554444646e-3
allele num: 11002
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.197e0

MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.33e-1

MQ
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VQSLOD
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SIO_000300: 2.17e0

InbreedingCoeff
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SIO_000300: 8.399999999999999e-3

QD
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SIO_000300: 1.07e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.572871118940514e-5
allele num: 63578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.165e0

BaseQRankSum
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QD
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.286670097786928e-4
allele num: 15544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 8.169999999999999e-1

InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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SIO_000300: 1.4e0

MQRankSum
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SIO_000300: 3.59e-1

BaseQRankSum
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SIO_000300: 1.18e0

ClippingRankSum
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SIO_000300: -2.56e-1

DP
type: SiteQuality
SIO_000300: 1.49265e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.608751608751609e-5
allele num: 62160
num of homozygotes: 0

ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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FS
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.626598132665344e-5
allele num: 61478
num of homozygotes: 0

Latino
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East Asian
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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African
type: Population
allele count: 1
allele frequency: 1.060445387062566e-4
allele num: 9430
num of homozygotes: 0

Latino
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 532
bin: 5.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 2.016129032258065e-4
allele num: 9920
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66761164659974e-5
allele num: 59966
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.652e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
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SIO_000300: 1.406148e6

FS
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VQSLOD
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SIO_000300: 5.44e-1

ClippingRankSum
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SIO_000300: -7.0e-1

QD
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SIO_000300: 1.159e1

InbreedingCoeff
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SIO_000300: -8.0e-4

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 40

GenotypeQuality
all individuals: 547
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GenotypeQuality
all individuals: 1125
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 31
allele frequency: 2.076356329537843e-3
allele num: 14930
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.854411814289086e-4
allele num: 59318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.371e1

FS
type: SiteQuality
SIO_000300: 1.964e0

VQSLOD
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SIO_000300: 2.42e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
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SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQRankSum
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.384965e6

ReadPosRankSum
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1349
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GenotypeQuality
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GenotypeQuality
all individuals: 2260
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2970
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.1746486109582e-5
allele num: 54498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.64e0

FS
type: SiteQuality
SIO_000300: 7.16e-1

ClippingRankSum
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SIO_000300: 4.89e-1

DP
type: SiteQuality
SIO_000300: 1.229181e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2703
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 863
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GenotypeQuality
all individuals: 1324
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.179699e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -1.159e0

QD
type: SiteQuality
SIO_000300: 6.17e0

InbreedingCoeff
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SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 14
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2262
bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.20627261761158e-4
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.342281879194631e-4
allele num: 52150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.165126e6

ReadPosRankSum
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 1.75e0

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.013e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 892
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GenotypeQuality
all individuals: 2258
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variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 1.253761283851555e-4
allele num: 7976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.54273372415921e-4
allele num: 6482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
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SIO_000300: 0.0e0

MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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SIO_000300: 3.96e0

DP
type: SiteQuality
SIO_000300: 1.149826e6