12-72248410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248410
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248410
    reference: chr 12
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6775A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13399A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14819A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-155A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14819A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14819A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-155A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14819A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13399A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14819A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13399A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.70+28A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14819A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

12-72248423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248423
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248423
    reference: chr 12
allele count: 1457
allele frequency: 1.183590576766856e-1
allele num: 12310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6762T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-142T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13412T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-142T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13412T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.70+41T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14832T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13412T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 94
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-72248548-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248548
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248548
    reference: chr 12
allele count: 1
allele frequency: 8.120838070488874e-5
allele num: 12314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14957C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13537C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13537C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-17C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14957C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6637C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14957C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13537C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.71-17C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14957C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14957C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-17C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14957C>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-72248550-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248550
    reference: chr 12
allele count: 14
allele frequency: 1.136732705423839e-3
allele num: 12316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13539C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13539C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13539C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14959C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-15C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.71-15C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-15C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6635C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14959C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14959C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14959C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14959C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14959C>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-72248550-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248550
    reference: chr 12
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6635C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-15C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.71-15C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13539C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13539C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14959C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13539C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-15C>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

12-72248559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248559
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248559
    reference: chr 12
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14968T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-336-6T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13548T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14968T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13548T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14968T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14968T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14968T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.71-6T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13548T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.54-6T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6626T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14968T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-336-6T>C
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-72248568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248568
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248568
    reference: chr 12
allele count: 5
allele frequency: 4.059100503328462e-4
allele num: 12318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+14977C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+14977C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+14977C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+14977C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13557C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6617C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.74C>T
  hgvsp: ENSP00000417308.1:p.Ser25Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-333C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13557C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.57C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+14977C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13557C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+14977C>T
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser25Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

12-72248675-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72248675
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72248675
    reference: chr 12
allele count: 62
allele frequency: 5.056271407600717e-3
allele num: 12262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.184+13664A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.30+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-6510A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-268+13664A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.30+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.30+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.30+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+42A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.165+13664A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+42A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-447+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.30+15084A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+42A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

12-72255174-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255174
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255175
    reference: chr 12
allele count: 1
allele frequency: 5.779678649867068e-5
allele num: 17302
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6548dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6548dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6548dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-38-4dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10669dupT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10669dupT
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

12-72255219-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255219
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255219
    reference: chr 12
allele count: 1
allele frequency: 5.252652589557727e-5
allele num: 19038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.-4T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6586T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10631T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6586T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6586T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10631T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

12-72255235-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255235
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255233
    reference: chr 12
allele count: 1
allele frequency: 5.13663447709061e-5
allele num: 19468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10613_31-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6604_-268+6605delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.15_16delTT
  hgvsp: ENSP00000318262.6:p.Tyr6SerfsTer10
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10613_166-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10613_31-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6604_122+6605delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10613_185-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10613_31-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10613_-267-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10613_31-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10613_-446-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10613_31-10612delTT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6604_139+6605delTT
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr6SerfsTer10
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: CTT
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-72255238-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255238
    reference: chr 12
allele count: 1
allele frequency: 5.13083632632119e-5
allele num: 19490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6605T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10612T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.16T>A
  hgvsp: ENSP00000318262.6:p.Tyr6Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6605T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6605T>A
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr6Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

12-72255253-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255253
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255253
    reference: chr 12
allele count: 1
allele frequency: 5.09683995922528e-5
allele num: 19620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.31T>G
  hgvsp: ENSP00000318262.6:p.Leu11Val
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6620T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10597T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6620T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6620T>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10597T>G
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu11Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

12-72255266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255266
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255266
    reference: chr 12
allele count: 1
allele frequency: 5.087505087505087e-5
allele num: 19656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6633G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.44G>A
  hgvsp: ENSP00000318262.6:p.Gly15Asp
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6633G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6633G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10584G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10584G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly15Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

12-72255270-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255270
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255270
    reference: chr 12
allele count: 1
allele frequency: 5.089058524173028e-5
allele num: 19650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6637G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6637G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.48G>T
  hgvsp: ENSP00000318262.6:p.Arg16Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10580G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6637G>T
  variant of: http://identifiers.org/hgnc/25694
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg16Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-72255315-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255315
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255315
    reference: chr 12
allele count: 1
allele frequency: 5.170630816959669e-5
allele num: 19340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6682T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6682T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.54+39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10535T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6682T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10535T>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

12-72255317-T-TTCTACCAAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255317
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255327
    reference: chr 12
allele count: 1
allele frequency: 5.175983436853002e-5
allele num: 19320
alternate allele: TTCTACCAAAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-72255318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72255318
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72255318
    reference: chr 12
allele count: 1
allele frequency: 5.194805194805195e-5
allele num: 19250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.139+6685G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.54+42G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-268+6685G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.122+6685G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-10532G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-10532G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-72265812-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265812
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265812
    reference: chr 12
allele count: 1
allele frequency: 8.966036653157838e-6
allele num: 111532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.123-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-267-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.55-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.140-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.121-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-38T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-38T>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20773
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-72265830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265830
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265830
    reference: chr 12
allele count: 1
allele frequency: 8.67362869930264e-6
allele num: 115292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.121-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.55-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.123-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-267-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.140-20C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-20C>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

12-72265834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265834
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265834
    reference: chr 12
allele count: 1
allele frequency: 8.619797951936006e-6
allele num: 116012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.166-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.123-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.31-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-267-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.31-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.31-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.55-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-267-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.121-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.31-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.140-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-446-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.185-16A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.31-16A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-72265862-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265862
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265859
    reference: chr 12
allele count: 1
allele frequency: 8.34153584357952e-6
allele num: 119882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.137_139delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.71_73delAAG
  hgvsp: ENSP00000318262.6:p.Glu24del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.47_49delAAG
  hgvsp: ENSP00000419365.2:p.Glu16del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.47_49delAAG
  hgvsp: ENSP00000420678.2:p.Glu16del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.47_49delAAG
  hgvsp: ENSP00000418467.2:p.Glu16del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-251_-249delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*6_*8delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.201_203delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-430_-428delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.182_184delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.47_49delAAG
  hgvsp: ENSP00000420190.2:p.Glu16del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.47_49delAAG
  hgvsp: ENSP00000448182.1:p.Glu16del
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-251_-249delAAG
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.139_141delAAG
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu16del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: CAAG
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-72265873-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265873
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265873
    reference: chr 12
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.54A>G
  hgvsp: ENST00000468049.2:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.144A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.54A>G
  hgvsp: ENST00000485960.2:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.146A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.54A>G
  hgvsp: ENST00000462788.2:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.54A>G
  hgvsp: ENST00000472611.2:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-423A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.208A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.78A>G
  hgvsp: ENST00000319106.8:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.54A>G
  hgvsp: ENST00000550746.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.189A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-244A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-244A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val18Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

12-72265876-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265876
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265876
    reference: chr 12
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.57T>C
  hgvsp: ENST00000462788.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.81T>C
  hgvsp: ENST00000319106.8:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.57T>C
  hgvsp: ENST00000550746.1:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-241T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-241T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.57T>C
  hgvsp: ENST00000468049.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.57T>C
  hgvsp: ENST00000472611.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-420T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.57T>C
  hgvsp: ENST00000485960.2:c.57T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.211T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.147T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.149T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.192T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr19Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-72265882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265882
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265882
    reference: chr 12
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-235C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-414C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.153C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.198C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.63C>T
  hgvsp: ENST00000485960.2:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.87C>T
  hgvsp: ENST00000319106.8:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.63C>T
  hgvsp: ENST00000468049.2:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.63C>T
  hgvsp: ENST00000472611.2:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.155C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.63C>T
  hgvsp: ENST00000462788.2:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.63C>T
  hgvsp: ENST00000550746.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.217C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-235C>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His21His
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-72265887-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265887
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265887
    reference: chr 12
allele count: 19
allele frequency: 1.571624729101527e-4
allele num: 120894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.92C>G
  hgvsp: ENSP00000318262.6:p.Ser31Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-230C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-230C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-409C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.68C>G
  hgvsp: ENSP00000420678.2:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.68C>G
  hgvsp: ENSP00000448182.1:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.203C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.68C>G
  hgvsp: ENSP00000419365.2:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.158C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.68C>G
  hgvsp: ENSP00000420190.2:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*27C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.222C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.160C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.68C>G
  hgvsp: ENSP00000418467.2:p.Ser23Cys
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser23Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

12-72265888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265888
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265888
    reference: chr 12
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-408T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.69T>C
  hgvsp: ENST00000468049.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-229T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.69T>C
  hgvsp: ENST00000485960.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*28T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.159T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.93T>C
  hgvsp: ENST00000319106.8:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.69T>C
  hgvsp: ENST00000472611.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.204T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.69T>C
  hgvsp: ENST00000550746.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.161T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.223T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.69T>C
  hgvsp: ENST00000462788.2:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-229T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser23Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-72265890-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265890
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265890
    reference: chr 12
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-406G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.71G>T
  hgvsp: ENSP00000420678.2:p.Cys24Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.71G>T
  hgvsp: ENSP00000419365.2:p.Cys24Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.161G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.95G>T
  hgvsp: ENSP00000318262.6:p.Cys32Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.163G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.71G>T
  hgvsp: ENSP00000420190.2:p.Cys24Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-227G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.71G>T
  hgvsp: ENSP00000418467.2:p.Cys24Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*30G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-227G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.206G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.71G>T
  hgvsp: ENSP00000448182.1:p.Cys24Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.225G>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys24Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

12-72265902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265902
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265902
    reference: chr 12
allele count: 2
allele frequency: 1.652892561983471e-5
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.83A>G
  hgvsp: ENSP00000448182.1:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.83A>G
  hgvsp: ENSP00000420678.2:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.107A>G
  hgvsp: ENSP00000318262.6:p.Asn36Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-215A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-215A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*42A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.83A>G
  hgvsp: ENSP00000419365.2:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.83A>G
  hgvsp: ENSP00000420190.2:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.218A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-394A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.237A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.83A>G
  hgvsp: ENSP00000418467.2:p.Asn28Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.175A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.173A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn28Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-72265904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265904
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265904
    reference: chr 12
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.109G>A
  hgvsp: ENSP00000318262.6:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.85G>A
  hgvsp: ENSP00000420190.2:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.85G>A
  hgvsp: ENSP00000420678.2:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.85G>A
  hgvsp: ENSP00000419365.2:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.175G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.177G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-392G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-213G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.239G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.220G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.85G>A
  hgvsp: ENSP00000418467.2:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-213G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.85G>A
  hgvsp: ENSP00000448182.1:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp29Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-72265912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265912
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265912
    reference: chr 12
allele count: 3
allele frequency: 2.479625741821368e-5
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-205C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.93C>T
  hgvsp: ENST00000472611.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.93C>T
  hgvsp: ENST00000462788.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*52C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.185C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.93C>T
  hgvsp: ENST00000485960.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.228C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.117C>T
  hgvsp: ENST00000319106.8:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.93C>T
  hgvsp: ENST00000550746.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.93C>T
  hgvsp: ENST00000468049.2:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.183C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-384C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.247C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-205C>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp31Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-72265913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265913
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265913
    reference: chr 12
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.94G>A
  hgvsp: ENSP00000420678.2:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-204G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-383G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-204G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*53G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.118G>A
  hgvsp: ENSP00000318262.6:p.Gly40Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.94G>A
  hgvsp: ENSP00000420190.2:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.94G>A
  hgvsp: ENSP00000419365.2:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.229G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.248G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.184G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.94G>A
  hgvsp: ENSP00000418467.2:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.94G>A
  hgvsp: ENSP00000448182.1:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.186G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly32Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

12-72265915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265915
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265915
    reference: chr 12
allele count: 168
allele frequency: 1.388819999007986e-3
allele num: 120966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.231C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.96C>T
  hgvsp: ENST00000550746.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*55C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.96C>T
  hgvsp: ENST00000462788.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.96C>T
  hgvsp: ENST00000472611.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-202C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.96C>T
  hgvsp: ENST00000485960.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.250C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.96C>T
  hgvsp: ENST00000468049.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-202C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.120C>T
  hgvsp: ENST00000319106.8:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-381C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.186C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.188C>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16329
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 30397
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly32Gly
num of homozygotes: 2
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

12-72265925-G-GGAATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265925
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265930
    reference: chr 12
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: GGAATA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-191_-187dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.107_111dupGAATA
  hgvsp: ENSP00000419365.2:p.Leu38GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*66_*70dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.107_111dupGAATA
  hgvsp: ENSP00000420678.2:p.Leu38GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.107_111dupGAATA
  hgvsp: ENSP00000448182.1:p.Leu38GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.242_246dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.197_201dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.131_135dupGAATA
  hgvsp: ENSP00000318262.6:p.Leu46GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.261_265dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.107_111dupGAATA
  hgvsp: ENSP00000420190.2:p.Leu38GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.107_111dupGAATA
  hgvsp: ENSP00000418467.2:p.Leu38GlufsTer6
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-191_-187dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.199_203dupGAATA
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-370_-366dupGAATA
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu38GlufsTer6
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-72265930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265930
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265930
    reference: chr 12
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.111A>G
  hgvsp: ENSP00000419365.2:p.Ile37Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*70A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-187A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.111A>G
  hgvsp: ENSP00000418467.2:p.Ile37Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.201A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.111A>G
  hgvsp: ENSP00000420678.2:p.Ile37Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.111A>G
  hgvsp: ENSP00000448182.1:p.Ile37Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-366A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.203A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.135A>G
  hgvsp: ENSP00000318262.6:p.Ile45Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.111A>G
  hgvsp: ENSP00000420190.2:p.Ile37Met
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-187A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.265A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.246A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile37Met
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-72265934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265934
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265934
    reference: chr 12
allele count: 2
allele frequency: 1.660991611992359e-5
allele num: 120410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.269C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.115C>T
  hgvsp: ENSP00000420678.2:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-362C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.115C>T
  hgvsp: ENSP00000420190.2:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.207C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.115C>T
  hgvsp: ENSP00000448182.1:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-183C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.205C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-183C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.139C>T
  hgvsp: ENSP00000318262.6:p.Arg47Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.115C>T
  hgvsp: ENSP00000419365.2:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*74C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.250C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.115C>T
  hgvsp: ENSP00000418467.2:p.Arg39Cys
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg39Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

12-72265935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265935
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265935
    reference: chr 12
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-182G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.116G>A
  hgvsp: ENSP00000418467.2:p.Arg39His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.140G>A
  hgvsp: ENSP00000318262.6:p.Arg47His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.251G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.116G>A
  hgvsp: ENSP00000448182.1:p.Arg39His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.206G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.208G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.116G>A
  hgvsp: ENSP00000420678.2:p.Arg39His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.116G>A
  hgvsp: ENSP00000420190.2:p.Arg39His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.270G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.116G>A
  hgvsp: ENSP00000419365.2:p.Arg39His
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-361G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*75G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-182G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg39His
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-72265935-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265935
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265935
    reference: chr 12
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*75G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-182G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.116G>T
  hgvsp: ENSP00000420190.2:p.Arg39Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.116G>T
  hgvsp: ENSP00000420678.2:p.Arg39Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.116G>T
  hgvsp: ENSP00000419365.2:p.Arg39Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.140G>T
  hgvsp: ENSP00000318262.6:p.Arg47Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.251G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.116G>T
  hgvsp: ENSP00000448182.1:p.Arg39Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-361G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.116G>T
  hgvsp: ENSP00000418467.2:p.Arg39Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.270G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-182G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.208G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.206G>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg39Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

12-72265944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265944
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265944
    reference: chr 12
allele count: 1
allele frequency: 8.356173541012099e-6
allele num: 119672
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.125A>G
  hgvsp: ENSP00000448182.1:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.125A>G
  hgvsp: ENSP00000419365.2:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.215A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.125A>G
  hgvsp: ENSP00000420190.2:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-352A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.125A>G
  hgvsp: ENSP00000418467.2:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*84A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.260A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-173A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.125A>G
  hgvsp: ENSP00000420678.2:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.149A>G
  hgvsp: ENSP00000318262.6:p.Glu50Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.279A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.217A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-173A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu42Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-72265950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265950
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265950
    reference: chr 12
allele count: 1
allele frequency: 8.421619982819896e-6
allele num: 118742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+2T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+2T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.129+2T>C
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-72265952-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265952
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265952
    reference: chr 12
allele count: 2
allele frequency: 1.693680876649222e-5
allele num: 118086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+4A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+4A>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.129+4A>C
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

12-72265953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265953
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265953
    reference: chr 12
allele count: 3
allele frequency: 2.541037759821111e-5
allele num: 118062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+5G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+5G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.129+5G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/12-72265957-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265957
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265957
    reference: chr 12
allele count: 1
allele frequency: 8.553441905022582e-6
allele num: 116912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+9C>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+9C>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

12-72265960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265960
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265960
    reference: chr 12
allele count: 1
allele frequency: 8.614006374364718e-6
allele num: 116090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+12G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+12G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-72265965-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265965
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265965
    reference: chr 12
allele count: 4
allele frequency: 3.493083694285315e-5
allele num: 114512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+17T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+17T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-72265977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72265977
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72265977
    reference: chr 12
allele count: 4
allele frequency: 3.597639948193985e-5
allele num: 111184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.153+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.129+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.129+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*88+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.219+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.129+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.264+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.283+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.221+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-348+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-169+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.129+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-169+29A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.129+29A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

12-72266665-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266665
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266663
    reference: chr 12
allele count: 2
allele frequency: 1.688105607886829e-5
allele num: 118476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-41_130-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-41_130-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-41_265-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-41_222-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-41_-168-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-41_*89-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-41_154-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-41_-168-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-41_130-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-41_130-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-41_130-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-41_-347-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-41_220-40delAT
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-41_284-40delAT
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: CAT
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-72266666-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266666
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266666
    reference: chr 12
allele count: 3
allele frequency: 2.528786014127485e-5
allele num: 118634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-43A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-43A>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-72266670-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266670
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266670
    reference: chr 12
allele count: 30
allele frequency: 2.526188150493449e-4
allele num: 118756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-39T>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-39T>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-72266676-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266676
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266676
    reference: chr 12
allele count: 1
allele frequency: 8.4088730428348e-6
allele num: 118922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-33A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-33A>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-72266685-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266685
    reference: chr 12
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-24A>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-24A>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

12-72266688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266688
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266688
    reference: chr 12
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-21G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-21G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

12-72266692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266692
    reference: chr 12
allele count: 1
allele frequency: 8.350312301680083e-6
allele num: 119756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-17A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-17A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-72266693-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266693
    reference: chr 12
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-16T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-16T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-72266701-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266701
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266701
    reference: chr 12
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-8T>C
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-8T>C
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.130-8T>C
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-72266708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266708
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266708
    reference: chr 12
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.154-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.265-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.130-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.130-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.130-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-168-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.130-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*89-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.284-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-168-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.222-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.220-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.130-1G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-347-1G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.130-1G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-72266713-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266713
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266713
    reference: chr 12
allele count: 2
allele frequency: 1.654998924250699e-5
allele num: 120846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.226C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.269C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-164C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-343C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.224C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*93C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.158C>G
  hgvsp: ENSP00000318262.6:p.Ala53Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.134C>G
  hgvsp: ENSP00000420190.2:p.Ala45Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.288C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-164C>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.134C>G
  hgvsp: ENSP00000420678.2:p.Ala45Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.134C>G
  hgvsp: ENSP00000448182.1:p.Ala45Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.134C>G
  hgvsp: ENSP00000419365.2:p.Ala45Gly
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.134C>G
  hgvsp: ENSP00000418467.2:p.Ala45Gly
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala45Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-72266714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266714
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266714
    reference: chr 12
allele count: 81
allele frequency: 6.701303858627308e-4
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-163C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.270C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.135C>T
  hgvsp: ENST00000462788.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.135C>T
  hgvsp: ENST00000550746.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.135C>T
  hgvsp: ENST00000485960.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.289C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.135C>T
  hgvsp: ENST00000468049.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-163C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.159C>T
  hgvsp: ENST00000319106.8:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.227C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-342C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.225C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.135C>T
  hgvsp: ENST00000472611.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala45Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

12-72266715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266715
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266715
    reference: chr 12
allele count: 2
allele frequency: 1.654259718775848e-5
allele num: 120900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.136G>A
  hgvsp: ENSP00000420190.2:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.136G>A
  hgvsp: ENSP00000448182.1:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.290G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.136G>A
  hgvsp: ENSP00000418467.2:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.271G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-162G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.226G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.136G>A
  hgvsp: ENSP00000420678.2:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.136G>A
  hgvsp: ENSP00000419365.2:p.Glu46Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*95G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-162G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.228G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.160G>A
  hgvsp: ENSP00000318262.6:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-341G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu46Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

12-72266723-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266723
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266723
    reference: chr 12
allele count: 2
allele frequency: 1.65264671371201e-5
allele num: 121018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-154A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*103A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.144A>T
  hgvsp: ENST00000550746.1:c.144A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.168A>T
  hgvsp: ENST00000319106.8:c.168A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.279A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.144A>T
  hgvsp: ENST00000472611.2:c.144A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.144A>T
  hgvsp: ENST00000485960.2:c.144A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-154A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.144A>T
  hgvsp: ENST00000462788.2:c.144A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.144A>T
  hgvsp: ENST00000468049.2:c.144A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.236A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.234A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.298A>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-333A>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile48Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

12-72266724-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266724
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266724
    reference: chr 12
allele count: 2
allele frequency: 1.652482855490374e-5
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.145G>T
  hgvsp: ENSP00000419365.2:p.Val49Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.235G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*104G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.145G>T
  hgvsp: ENSP00000420678.2:p.Val49Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.299G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-332G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.280G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.169G>T
  hgvsp: ENSP00000318262.6:p.Val57Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.145G>T
  hgvsp: ENSP00000420190.2:p.Val49Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.237G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-153G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-153G>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.145G>T
  hgvsp: ENSP00000448182.1:p.Val49Leu
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.145G>T
  hgvsp: ENSP00000418467.2:p.Val49Leu
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val49Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

12-72266734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266734
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266734
    reference: chr 12
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.155G>A
  hgvsp: ENSP00000419365.2:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.179G>A
  hgvsp: ENSP00000318262.6:p.Arg60Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.155G>A
  hgvsp: ENSP00000420190.2:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-322G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.247G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-143G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.155G>A
  hgvsp: ENSP00000420678.2:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.290G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.245G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.155G>A
  hgvsp: ENSP00000418467.2:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.155G>A
  hgvsp: ENSP00000448182.1:p.Arg52Lys
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-143G>A
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.309G>A
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg52Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

12-72266738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266738
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266738
    reference: chr 12
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.159A>G
  hgvsp: ENST00000472611.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.251A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.159A>G
  hgvsp: ENST00000550746.1:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.183A>G
  hgvsp: ENST00000319106.8:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.159A>G
  hgvsp: ENST00000485960.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-139A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.159A>G
  hgvsp: ENST00000462788.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.249A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.159A>G
  hgvsp: ENST00000468049.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.294A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-139A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-318A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.313A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro53Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-72266750-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266750
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266750
    reference: chr 12
allele count: 5
allele frequency: 4.127592127856294e-5
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.261A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.171A>G
  hgvsp: ENST00000462788.2:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-306A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*130A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.306A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-127A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.325A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.171A>G
  hgvsp: ENST00000468049.2:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.171A>G
  hgvsp: ENST00000485960.2:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.263A>G
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.171A>G
  hgvsp: ENST00000550746.1:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.171A>G
  hgvsp: ENST00000472611.2:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.195A>G
  hgvsp: ENST00000319106.8:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-127A>G
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala57Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-72266761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266761
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266761
    reference: chr 12
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000474468
  gene symbol: TBC1D15
  hgvsc: ENST00000474468.1:n.336C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*141C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000460818
  gene symbol: TBC1D15
  hgvsc: ENST00000460818.1:n.272C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000376986
  ensembl transcript: ENST00000393309
  gene symbol: TBC1D15
  hgvsc: ENST00000393309.3:c.-295C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.182C>T
  hgvsp: ENSP00000420678.2:p.Ser61Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000419365
  ensembl transcript: ENST00000472611
  gene symbol: TBC1D15
  hgvsc: ENST00000472611.2:c.182C>T
  hgvsp: ENSP00000419365.2:p.Ser61Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418091
  ensembl transcript: ENST00000491063
  gene symbol: TBC1D15
  hgvsc: ENST00000491063.1:c.-116C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.206C>T
  hgvsp: ENSP00000318262.6:p.Ser69Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420190
  ensembl transcript: ENST00000468049
  gene symbol: TBC1D15
  hgvsc: ENST00000468049.2:c.182C>T
  hgvsp: ENSP00000420190.2:p.Ser61Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.317C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.274C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-116C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000448182
  ensembl transcript: ENST00000550746
  gene symbol: TBC1D15
  hgvsc: ENST00000550746.1:c.182C>T
  hgvsp: ENSP00000448182.1:p.Ser61Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.182C>T
  hgvsp: ENSP00000418467.2:p.Ser61Phe
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser61Phe
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

12-72266769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72266769
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 72266769
    reference: chr 12
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000418467
  ensembl transcript: ENST00000462788
  gene symbol: TBC1D15
  hgvsc: ENST00000462788.2:c.190C>T
  hgvsp: ENSP00000418467.2:p.Leu64Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000318262
  ensembl transcript: ENST00000319106
  gene symbol: TBC1D15
  hgvsc: ENST00000319106.8:c.214C>T
  hgvsp: ENSP00000318262.6:p.Leu72Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000420678
  ensembl transcript: ENST00000485960
  gene symbol: TBC1D15
  hgvsc: ENST00000485960.2:c.190C>T
  hgvsp: ENSP00000420678.2:p.Leu64Phe
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000549402
  gene symbol: TBC1D15
  hgvsc: ENST00000549402.1:n.282C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000417308
  ensembl transcript: ENST00000498482
  gene symbol: TBC1D15
  hgvsc: ENST00000498482.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121749
  ensembl protein: ENSP00000449643
  ensembl transcript: ENST00000482439
  gene symbol: TBC1D15
  hgvsc: ENST00000482439.2:c.-108C>T
  variant of: http://identifiers.org/hgnc/25694
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121749
  ensembl transcript: ENST00000546932
  gene symbol: TBC1D15
  hgvsc: ENST00000546932.1:n.325C>T
  variant of: http://identifiers.org/hgnc/25694
canonical: true
consequence: missense
filter: PASS
hgvs: p.Leu64Phe
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1474
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1491
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
SIO_000300: 1.73e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.965e0

DP
type: SiteQuality
SIO_000300: 2.14246e5

MQRankSum
type: SiteQuality
SIO_000300: -1.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 171
bin: 5.75e1
variant carriers: 123

GenotypeDepth
all individuals: 556
bin: 2.25e1
variant carriers: 38

GenotypeDepth
all individuals: 45
bin: 6.75e1
variant carriers: 35

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 722
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 518
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 368
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2839
bin: 9.75e1
variant carriers: 1341

Latino
type: Population
allele count: 16
allele frequency: 8.51063829787234e-2
allele num: 188
num of homozygotes: 1

South Asian
type: Population
allele count: 1086
allele frequency: 1.426319936958235e-1
allele num: 7614
num of homozygotes: 80

East Asian
type: Population
allele count: 19
allele frequency: 9.595959595959595e-2
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 251
allele frequency: 6.94137168141593e-2
allele num: 3616
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 1.287878787878788e-1
allele num: 132
num of homozygotes: 3

African
type: Population
allele count: 68
allele frequency: 1.214285714285714e-1
allele num: 560
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.955e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

DP
type: SiteQuality
SIO_000300: 2.26269e5

GenotypeDepth
all individuals: 13
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1746
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.831e0

DP
type: SiteQuality
SIO_000300: 1.97509e5

FS
type: SiteQuality
SIO_000300: 1.573e0

MQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 679
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.934770591487009e-3
allele num: 3618
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.186351706036745e-4
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

FS
type: SiteQuality
SIO_000300: 1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.9779e5

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeDepth
all individuals: 1745
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 611
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.763957987838585e-4
allele num: 3618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

FS
type: SiteQuality
SIO_000300: 1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

DP
type: SiteQuality
SIO_000300: 1.9779e5

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2246
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

QD
type: SiteQuality
SIO_000300: 1.515e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

VQSLOD
type: SiteQuality
SIO_000300: -7.51e-2

DP
type: SiteQuality
SIO_000300: 1.97429e5

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

FS
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 380
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 8.960573476702509e-3
allele num: 558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.97517e5

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeDepth
all individuals: 1711
bin: 2.75e1
variant carriers: 15

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 733
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.050505050505051e-3
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.692307692307693e-3
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 3.225806451612903e-2
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 41
allele frequency: 5.387647831800263e-3
allele num: 7610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.796420581655481e-4
allele num: 3576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

QD
type: SiteQuality
SIO_000300: 1.428e1

DP
type: SiteQuality
SIO_000300: 1.85004e5

GenotypeDepth
all individuals: 539
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.611343860779891e-4
allele num: 6206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.78543e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.789e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

GenotypeDepth
all individuals: 364
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 982
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5076
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.34661998384056e-4
allele num: 7426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.172e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

VQSLOD
type: SiteQuality
SIO_000300: -2.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

QD
type: SiteQuality
SIO_000300: 1.539e1

FS
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 4.18774e5

MQRankSum
type: SiteQuality
SIO_000300: -1.299e0

GenotypeDepth
all individuals: 4109
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.196458482890644e-4
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.571e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 4.24691e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.108e0

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeDepth
all individuals: 152
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.295336787564767e-4
allele num: 7720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.529e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.71e-1

FS
type: SiteQuality
SIO_000300: 4.925e0

DP
type: SiteQuality
SIO_000300: 4.25111e5

GenotypeDepth
all individuals: 177
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: -7.074e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.385e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

DP
type: SiteQuality
SIO_000300: 4.26709e5

FS
type: SiteQuality
SIO_000300: 2.424e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 982
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.188495364868077e-4
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.591e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e0

QD
type: SiteQuality
SIO_000300: 1.262e1

DP
type: SiteQuality
SIO_000300: 4.26871e5

FS
type: SiteQuality
SIO_000300: 1.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

GenotypeDepth
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.188495364868077e-4
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 4.26561e5

QD
type: SiteQuality
SIO_000300: 1.006e1

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

FS
type: SiteQuality
SIO_000300: 1.402e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0

GenotypeDepth
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 970
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.208313194780087e-4
allele num: 8276
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0876e1

MQ
type: SiteQuality
SIO_000300: 3.535e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.328e0

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.36e-1

DP
type: SiteQuality
SIO_000300: 4.03957e5

QD
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

GenotypeDepth
all individuals: 176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.210067763794773e-4
allele num: 8264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

VQSLOD
type: SiteQuality
SIO_000300: -3.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.8373e1

MQRankSum
type: SiteQuality
SIO_000300: -1.366e0

DP
type: SiteQuality
SIO_000300: 4.02761e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

QD
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 3.557e1

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 982
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.212415130940834e-4
allele num: 8248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.084e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 4.694e0

VQSLOD
type: SiteQuality
SIO_000300: -3.868e0

DP
type: SiteQuality
SIO_000300: 4.02742e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.408e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeDepth
all individuals: 4446
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5635
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.799095304944626e-5
allele num: 12822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

DP
type: SiteQuality
SIO_000300: 1.578396e6

GenotypeDepth
all individuals: 1200
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.942334460131238e-5
allele num: 10058
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.358e0

DP
type: SiteQuality
SIO_000300: 1.662852e6

VQSLOD
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.333e0

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeDepth
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5983
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2098
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

VQSLOD
type: SiteQuality
SIO_000300: -8.288e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.672365e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeDepth
all individuals: 30145
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15976
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.272e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 1.418e0

DP
type: SiteQuality
SIO_000300: 1.72097e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.505e0

MQ
type: SiteQuality
SIO_000300: 5.737e1

GenotypeDepth
all individuals: 1200
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2114
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.202704379109291e-5
allele num: 16122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.728492e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.952e0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.913e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.729356e6

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.16e0

FS
type: SiteQuality
SIO_000300: 4.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

GenotypeDepth
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 1.730951e6

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

FS
type: SiteQuality
SIO_000300: 2.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

GenotypeDepth
all individuals: 225
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16244
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5106
bin: 9.75e1
variant carriers: 19

Latino
type: Population
allele count: 19
allele frequency: 1.643598615916955e-3
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.733582e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeDepth
all individuals: 30619
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16259
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5088
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.732248e6

QD
type: SiteQuality
SIO_000300: 1.561e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6145
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 1.337e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.896e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.935e1

VQSLOD
type: SiteQuality
SIO_000300: -1.161e0

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

DP
type: SiteQuality
SIO_000300: 1.732551e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeDepth
all individuals: 16317
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1197
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5088
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.73322e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.081e1

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

FS
type: SiteQuality
SIO_000300: 7.921e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16329
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1197
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 850
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42219
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 9.51e0

DP
type: SiteQuality
SIO_000300: 1.73314e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.039e0

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 542
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5089
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.732943e6

QD
type: SiteQuality
SIO_000300: 8.75e0

VQSLOD
type: SiteQuality
SIO_000300: -2.749e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.07e-1

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6158
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6716
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.73289e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

GenotypeDepth
all individuals: 200
bin: 7.25e1
variant carriers: 11

GenotypeDepth
all individuals: 280
bin: 6.75e1
variant carriers: 8

GenotypeDepth
all individuals: 2096
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 7.75e1
variant carriers: 8

GenotypeDepth
all individuals: 350
bin: 6.25e1
variant carriers: 8

GenotypeDepth
all individuals: 168
bin: 8.25e1
variant carriers: 10

GenotypeDepth
all individuals: 128
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5219
bin: 9.75e1
variant carriers: 166

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.964710207082465e-4
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058681185722928e-3
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.647526807333103e-4
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.853564547206166e-4
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 133
allele frequency: 1.998617497670784e-3
allele num: 66546
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 1.745615e6

FS
type: SiteQuality
SIO_000300: 1.144e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2109
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30145
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1194
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 274
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41968
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.414e-1

DP
type: SiteQuality
SIO_000300: 1.730538e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.672000000000001e0

FS
type: SiteQuality
SIO_000300: 2.482e0

MQ
type: SiteQuality
SIO_000300: 5.098e1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.692e0

GenotypeDepth
all individuals: 274
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16396
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6197
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 849
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1958
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.279e0

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

DP
type: SiteQuality
SIO_000300: 1.72822e6

FS
type: SiteQuality
SIO_000300: 3.444e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

QD
type: SiteQuality
SIO_000300: 1.048e1

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

GenotypeDepth
all individuals: 16365
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.244536030972898e-5
allele num: 16014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.369e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.725227e6

FS
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.535e0

GenotypeDepth
all individuals: 6202
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29609
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

FS
type: SiteQuality
SIO_000300: 2.224e0

DP
type: SiteQuality
SIO_000300: 1.724693e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeDepth
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6202
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.724693e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeDepth
all individuals: 851
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1080
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2109
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1194
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -1.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.25e-1

FS
type: SiteQuality
SIO_000300: 3.369e0

DP
type: SiteQuality
SIO_000300: 1.712743e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.876e1

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27530
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5067
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65654
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

DP
type: SiteQuality
SIO_000300: 1.69636e6

FS
type: SiteQuality
SIO_000300: 4.209e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.74e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2112
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2551
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15867
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 191
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6158
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5067
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531112199902009e-5
allele num: 65312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.429e1

DP
type: SiteQuality
SIO_000300: 1.68417e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

FS
type: SiteQuality
SIO_000300: 9.084e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 545
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1191
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2558
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 850
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26565
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 892
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6535
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.062787136294027e-5
allele num: 65300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.683e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.271e1

FS
type: SiteQuality
SIO_000300: 1.824e0

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

DP
type: SiteQuality
SIO_000300: 1.684104e6

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35876
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545212930341801e-5
allele num: 64716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.805e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.097e0

DP
type: SiteQuality
SIO_000300: 1.662695e6

QD
type: SiteQuality
SIO_000300: 3.475e1

VQSLOD
type: SiteQuality
SIO_000300: -3.708e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

GenotypeDepth
all individuals: 2109
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15509
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5517
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55550024888004e-5
allele num: 64288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.82e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 6.02e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.64725e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

GenotypeDepth
all individuals: 411
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5980
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 854
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5070
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.30715862503942e-5
allele num: 63420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.608411e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.381e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.084e0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1190
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 891
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9096
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.545470661230278e-4
allele num: 11282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.641e0

DP
type: SiteQuality
SIO_000300: 1.507704e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.224e1

FS
type: SiteQuality
SIO_000300: 1.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.011e1

GenotypeDepth
all individuals: 1118
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7061
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7548
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1486
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2057
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6043
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28397
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7939
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049245311785333e-5
allele num: 65590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.64179e6

FS
type: SiteQuality
SIO_000300: 5.758e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
SIO_000300: 1.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.025e1

GenotypeDepth
all individuals: 1486
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4522
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7057
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28397
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7900
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.925545571245186e-4
allele num: 15580
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

FS
type: SiteQuality
SIO_000300: 8.316000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.875e0

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 2.231e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e0

DP
type: SiteQuality
SIO_000300: 2.642916e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.739e0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2126
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7058
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3383
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2063
bin: 9.75e1
variant carriers: 8

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28410
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 2079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.995805871779509e-3
allele num: 10014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.649683e6

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

QD
type: SiteQuality
SIO_000300: 1.343e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeDepth
all individuals: 7628
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4593
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.954210631096954e-5
allele num: 10046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.156e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.12e0

MQRankSum
type: SiteQuality
SIO_000300: -4.526e0

VQSLOD
type: SiteQuality
SIO_000300: -3.188e0

FS
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 2.658184e6

GenotypeDepth
all individuals: 4593
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2242
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2058
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5882
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.893153937475267e-5
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.394e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

DP
type: SiteQuality
SIO_000300: 2.669919e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

MQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

GenotypeDepth
all individuals: 7143
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5883
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1481
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2059
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7060
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11304
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.572e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQ
type: SiteQuality
SIO_000300: 3.853e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.01e-1

DP
type: SiteQuality
SIO_000300: 2.674426e6

GenotypeDepth
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1481
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3387
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5884
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3661
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.24687656171914e-5
allele num: 16008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.787e1

QD
type: SiteQuality
SIO_000300: 3.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

DP
type: SiteQuality
SIO_000300: 2.67961e6

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeDepth
all individuals: 7434
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7057
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7682
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5884
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1481
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 2.680625e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeDepth
all individuals: 7689
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7057
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2059
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4593
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3387
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.688466e6

FS
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.118e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

GenotypeDepth
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 345
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2058
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 2.693154e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.163e0

GenotypeDepth
all individuals: 7057
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5884
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28398
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

QD
type: SiteQuality
SIO_000300: 1.03e1

FS
type: SiteQuality
SIO_000300: 1.698e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 2.695461e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 458
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 7014
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4587
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2121
bin: 9.75e1
variant carriers: 68

GenotypeDepth
all individuals: 3379
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 593
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28425
bin: 9.75e1
variant carriers: 81

GenotypeQuality
all individuals: 3496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 69
allele frequency: 1.038187234810869e-3
allele num: 66462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.212121212121212e-3
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936858415649816e-4
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

DP
type: SiteQuality
SIO_000300: 2.702958e6

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 1.167e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeDepth
all individuals: 7442
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4592
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7051
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5888
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2058
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 7743
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13035
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28380
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21713729308666e-4
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.69e0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.505e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 5.39e-1

DP
type: SiteQuality
SIO_000300: 2.695869e6

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5887
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8338
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2058
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28379
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005801196308876e-5
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.87e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.812e1

VQSLOD
type: SiteQuality
SIO_000300: -3.615e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

DP
type: SiteQuality
SIO_000300: 2.697077e6

GenotypeDepth
all individuals: 7050
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3385
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2058
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5887
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2243
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28379
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005620510354363e-5
allele num: 66542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.819e1

FS
type: SiteQuality
SIO_000300: 1.547e0

DP
type: SiteQuality
SIO_000300: 2.69715e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: -4.977e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.593e0

MQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

GenotypeDepth
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7444
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8347
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7050
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3470
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.162e0

DP
type: SiteQuality
SIO_000300: 2.697815e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

QD
type: SiteQuality
SIO_000300: 1.165e1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeDepth
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2057
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7442
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28379
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.697953e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

GenotypeDepth
all individuals: 2060
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4586
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5889
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28377
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505722267279445e-5
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.698773e6

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

GenotypeDepth
all individuals: 4587
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2056
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2243
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 723
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5890
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 1.856e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.73e-1

DP
type: SiteQuality
SIO_000300: 2.697777e6

QD
type: SiteQuality
SIO_000300: 1.335e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.237e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.478e0