14-100192641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192641
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192641
    reference: chr 14
allele count: 6
allele frequency: 5.281504172388296e-5
allele num: 113604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1041+48G>C
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1332+48G>C
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1291+48G>C
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.843+48G>C
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6401
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7025
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

14-100192641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192641
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192641
    reference: chr 14
allele count: 1
allele frequency: 8.802506953980493e-6
allele num: 113604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1041+48G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1291+48G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.843+48G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1332+48G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

14-100192642-GGGGCTCATCCTGAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192642
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192627
    reference: chr 14
allele count: 3
allele frequency: 2.644569816643159e-5
allele num: 113440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5749
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: GGGGCTCATCCTGAGC
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

14-100192644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192644
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192644
    reference: chr 14
allele count: 1
allele frequency: 8.881310170876408e-6
allele num: 112596
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1332+51G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.843+51G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1291+51G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1041+51G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4922
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

14-100192644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192644
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192644
    reference: chr 14
allele count: 20
allele frequency: 1.776262034175282e-4
allele num: 112596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1041+51G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1332+51G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1291+51G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.843+51G>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4922
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

14-100192870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192870
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192870
    reference: chr 14
allele count: 2
allele frequency: 8.247422680412371e-5
allele num: 24250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1292-24C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1333-24C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1042-24C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.844-24C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-100192873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192873
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192873
    reference: chr 14
allele count: 75
allele frequency: 2.990669112369407e-3
allele num: 25078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1042-21C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1292-21C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.844-21C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1333-21C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36179
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11222
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

14-100192882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192882
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192882
    reference: chr 14
allele count: 6
allele frequency: 2.13022793438898e-4
allele num: 28166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1042-12C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1333-12C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.844-12C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1292-12C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

14-100192883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192883
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192883
    reference: chr 14
allele count: 4
allele frequency: 1.396745582792094e-4
allele num: 28638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1292-11G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1042-11G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.844-11G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1333-11G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

14-100192883-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192883
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192883
    reference: chr 14
allele count: 2
allele frequency: 6.983727913960472e-5
allele num: 28638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1292-11G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1042-11G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1333-11G>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.844-11G>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-100192903-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192903
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192903
    reference: chr 14
allele count: 1
allele frequency: 2.635046113306983e-5
allele num: 37950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.853A>C
  hgvsp: ENSP00000450553.1:p.Lys285Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1301A>C
  hgvsp: ENSP00000369577.2:p.Lys435Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1342A>C
  hgvsp: ENSP00000261835.3:p.Lys448Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1051A>C
  hgvsp: ENSP00000405779.2:p.Lys351Gln
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys448Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-100192911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192911
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192911
    reference: chr 14
allele count: 1
allele frequency: 2.526783909440065e-5
allele num: 39576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1059C>T
  hgvsp: ENST00000423126.2:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1309C>T
  hgvsp: ENST00000380228.2:c.1309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1350C>T
  hgvsp: ENST00000261835.3:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.861C>T
  hgvsp: ENST00000554176.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val450Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

14-100192915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192915
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192915
    reference: chr 14
allele count: 1
allele frequency: 2.498126405196103e-5
allele num: 40030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.865G>A
  hgvsp: ENSP00000450553.1:p.Ala289Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1063G>A
  hgvsp: ENSP00000405779.2:p.Ala355Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1354G>A
  hgvsp: ENSP00000261835.3:p.Ala452Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1313G>A
  hgvsp: ENSP00000369577.2:p.Ala439Thr
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala452Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

14-100192937-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192937
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192937
    reference: chr 14
allele count: 1
allele frequency: 2.670512204240773e-5
allele num: 37446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1335A>T
  hgvsp: ENSP00000369577.2:p.Glu446Val
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.887A>T
  hgvsp: ENSP00000450553.1:p.Glu296Val
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1376A>T
  hgvsp: ENSP00000261835.3:p.Glu459Val
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1085A>T
  hgvsp: ENSP00000405779.2:p.Glu362Val
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu459Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

14-100192938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192938
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192938
    reference: chr 14
allele count: 1
allele frequency: 2.753455586761385e-5
allele num: 36318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.888G>A
  hgvsp: ENST00000554176.1:c.888G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1086G>A
  hgvsp: ENST00000423126.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1377G>A
  hgvsp: ENST00000261835.3:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1336G>A
  hgvsp: ENST00000380228.2:c.1336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu459Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

14-100192942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192942
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192942
    reference: chr 14
allele count: 5
allele frequency: 1.404889013767912e-4
allele num: 35590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1340C>T
  hgvsp: ENSP00000369577.2:p.Arg448Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.892C>T
  hgvsp: ENSP00000450553.1:p.Arg298Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1090C>T
  hgvsp: ENSP00000405779.2:p.Arg364Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1381C>T
  hgvsp: ENSP00000261835.3:p.Arg461Trp
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28434
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg461Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-100192947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192947
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192947
    reference: chr 14
allele count: 1
allele frequency: 2.911208151382824e-5
allele num: 34350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.897G>A
  hgvsp: ENST00000554176.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1095G>A
  hgvsp: ENST00000423126.2:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1386G>A
  hgvsp: ENST00000261835.3:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1345G>A
  hgvsp: ENST00000380228.2:c.1345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu462Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

14-100192949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192949
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192949
    reference: chr 14
allele count: 1
allele frequency: 3.082234003205523e-5
allele num: 32444
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1388T>C
  hgvsp: ENSP00000261835.3:p.Val463Ala
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1347T>C
  hgvsp: ENSP00000369577.2:p.Val450Ala
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1097T>C
  hgvsp: ENSP00000405779.2:p.Val366Ala
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.899T>C
  hgvsp: ENSP00000450553.1:p.Val300Ala
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val463Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

14-100192950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192950
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192950
    reference: chr 14
allele count: 1
allele frequency: 3.128128128128128e-5
allele num: 31968
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1389G>A
  hgvsp: ENST00000261835.3:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1348G>A
  hgvsp: ENST00000380228.2:c.1348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1098G>A
  hgvsp: ENST00000423126.2:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.900G>A
  hgvsp: ENST00000554176.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18029
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val463Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

14-100192953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192953
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192953
    reference: chr 14
allele count: 2
allele frequency: 6.389368091495751e-5
allele num: 31302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1351C>T
  hgvsp: ENST00000380228.2:c.1351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.903C>T
  hgvsp: ENST00000554176.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1392C>T
  hgvsp: ENST00000261835.3:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1101C>T
  hgvsp: ENST00000423126.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24700
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18919
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro464Pro
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-100192960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192960
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192960
    reference: chr 14
allele count: 1
allele frequency: 3.659250585480094e-5
allele num: 27328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1399C>T
  hgvsp: ENSP00000261835.3:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1358C>T
  hgvsp: ENSP00000369577.2:p.Arg454Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1108C>T
  hgvsp: ENSP00000405779.2:p.Arg370Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.910C>T
  hgvsp: ENSP00000450553.1:p.Arg304Cys
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg467Cys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

14-100192965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192965
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192965
    reference: chr 14
allele count: 1
allele frequency: 4.059100503328463e-5
allele num: 24636
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1404C>T
  hgvsp: ENST00000261835.3:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.915C>T
  hgvsp: ENST00000554176.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1363C>T
  hgvsp: ENST00000380228.2:c.1363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1113C>T
  hgvsp: ENST00000423126.2:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21659
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe468Phe
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

14-100192977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192977
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192977
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 20400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1375G>A
  hgvsp: ENST00000380228.2:c.1375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1125G>A
  hgvsp: ENST00000423126.2:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1416G>A
  hgvsp: ENST00000261835.3:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.927G>A
  hgvsp: ENST00000554176.1:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19834
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14096
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu472Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-100192989-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192989
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192989
    reference: chr 14
allele count: 1
allele frequency: 5.73921028466483e-5
allele num: 17424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1137C>G
  hgvsp: ENST00000423126.2:c.1137C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.939C>G
  hgvsp: ENST00000554176.1:c.939C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1387C>G
  hgvsp: ENST00000380228.2:c.1387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1428C>G
  hgvsp: ENST00000261835.3:c.1428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23738
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4505
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7026
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu476Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

14-100192995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100192995
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100192995
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 20550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.945A>G
  hgvsp: ENST00000554176.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1143A>G
  hgvsp: ENST00000423126.2:c.1143A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1393A>G
  hgvsp: ENST00000380228.2:c.1393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1434A>G
  hgvsp: ENST00000261835.3:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20721
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro478Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

14-100193002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193002
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193002
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 19848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1441C>T
  hgvsp: ENSP00000261835.3:p.Pro481Ser
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1400C>T
  hgvsp: ENSP00000369577.2:p.Pro468Ser
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1150C>T
  hgvsp: ENSP00000405779.2:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.952C>T
  hgvsp: ENSP00000450553.1:p.Pro318Ser
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27818
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro481Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

14-100193004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193004
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193004
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 19546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1402C>T
  hgvsp: ENST00000380228.2:c.1402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1152C>T
  hgvsp: ENST00000423126.2:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.954C>T
  hgvsp: ENST00000554176.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1443C>T
  hgvsp: ENST00000261835.3:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro481Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

14-100193005-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193005
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193005
    reference: chr 14
allele count: 25
allele frequency: 1.287067545304777e-3
allele num: 19424
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1444G>T
  hgvsp: ENSP00000261835.3:p.Val482Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1153G>T
  hgvsp: ENSP00000405779.2:p.Val385Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.955G>T
  hgvsp: ENSP00000450553.1:p.Val319Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1403G>T
  hgvsp: ENSP00000369577.2:p.Val469Leu
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19465
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 28326
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28411
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18341
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 3
hgvs: p.Val482Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/14-100193016-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193016
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193016
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 15332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1164C>A
  hgvsp: ENST00000423126.2:c.1164C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1414C>A
  hgvsp: ENST00000380228.2:c.1414C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.966C>A
  hgvsp: ENST00000554176.1:c.966C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1455C>A
  hgvsp: ENST00000261835.3:c.1455C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15725
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31573
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr485Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

14-100193020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193020
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193020
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 13386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1168C>T
  hgvsp: ENSP00000405779.2:p.Arg390Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.970C>T
  hgvsp: ENSP00000450553.1:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1418C>T
  hgvsp: ENSP00000369577.2:p.Arg474Trp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1459C>T
  hgvsp: ENSP00000261835.3:p.Arg487Trp
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14782
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32030
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg487Trp
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-100193021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193021
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193021
    reference: chr 14
allele count: 3
allele frequency: 2.215984635839858e-4
allele num: 13538
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1460G>A
  hgvsp: ENSP00000261835.3:p.Arg487Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1419G>A
  hgvsp: ENSP00000369577.2:p.Arg474Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1169G>A
  hgvsp: ENSP00000405779.2:p.Arg390Gln
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.971G>A
  hgvsp: ENSP00000450553.1:p.Arg324Gln
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 32436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg487Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

14-100193024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193024
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193024
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 12846
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1463C>T
  hgvsp: ENSP00000261835.3:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.974C>T
  hgvsp: ENSP00000450553.1:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1172C>T
  hgvsp: ENSP00000405779.2:p.Pro391Leu
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1422C>T
  hgvsp: ENSP00000369577.2:p.Pro475Leu
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32835
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro488Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

14-100193028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193028
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193028
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 11320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.978C>T
  hgvsp: ENST00000554176.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1176C>T
  hgvsp: ENST00000423126.2:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1426C>T
  hgvsp: ENST00000380228.2:c.1426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1467C>T
  hgvsp: ENST00000261835.3:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg489Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

14-100193030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193030
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193030
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 11184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.980G>A
  hgvsp: ENSP00000450553.1:p.Gly327Asp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1469G>A
  hgvsp: ENSP00000261835.3:p.Gly490Asp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1178G>A
  hgvsp: ENSP00000405779.2:p.Gly393Asp
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1428G>A
  hgvsp: ENSP00000369577.2:p.Gly477Asp
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13020
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly490Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

14-100193034-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193034
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193034
    reference: chr 14
allele count: 1
allele frequency: 1.009693053311793e-4
allele num: 9904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1182G>T
  hgvsp: ENSP00000405779.2:p.Trp394Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1432G>T
  hgvsp: ENSP00000369577.2:p.Trp478Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1473G>T
  hgvsp: ENSP00000261835.3:p.Trp491Cys
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.984G>T
  hgvsp: ENSP00000450553.1:p.Trp328Cys
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11909
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34882
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33632
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Trp491Cys
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

14-100193040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193040
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193040
    reference: chr 14
allele count: 1
allele frequency: 1.21153380179307e-4
allele num: 8254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1438C>T
  hgvsp: ENST00000380228.2:c.1438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1479C>T
  hgvsp: ENST00000261835.3:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1188C>T
  hgvsp: ENST00000423126.2:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.990C>T
  hgvsp: ENST00000554176.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8451
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33711
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro493Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

14-100193041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193041
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193041
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 8134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1480G>A
  hgvsp: ENSP00000261835.3:p.Ala494Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1439G>A
  hgvsp: ENSP00000369577.2:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1189G>A
  hgvsp: ENSP00000405779.2:p.Ala397Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.991G>A
  hgvsp: ENSP00000450553.1:p.Ala331Thr
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35684
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8586
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala494Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/14-100193044-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193044
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193044
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 6910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.994C>A
  hgvsp: ENSP00000450553.1:p.Pro332Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1483C>A
  hgvsp: ENSP00000261835.3:p.Pro495Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1192C>A
  hgvsp: ENSP00000405779.2:p.Pro398Thr
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1442C>A
  hgvsp: ENSP00000369577.2:p.Pro482Thr
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro495Thr
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

14-100193054-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193054
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193054
    reference: chr 14
allele count: 1
allele frequency: 1.724732666436702e-4
allele num: 5798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1452C>G
  hgvsp: ENSP00000369577.2:p.Pro485Arg
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.1004C>G
  hgvsp: ENSP00000450553.1:p.Pro335Arg
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1493C>G
  hgvsp: ENSP00000261835.3:p.Pro498Arg
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1202C>G
  hgvsp: ENSP00000405779.2:p.Pro401Arg
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro498Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

14-100193058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193058
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193058
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 5550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.1206C>T
  hgvsp: ENST00000423126.2:c.1206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.1456C>T
  hgvsp: ENST00000380228.2:c.1456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.1008C>T
  hgvsp: ENST00000554176.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.1497C>T
  hgvsp: ENST00000261835.3:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro499Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

14-100193069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193069
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193069
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 4528
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*5G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*5G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*5G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

14-100193074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193074
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193074
    reference: chr 14
allele count: 2
allele frequency: 5.068423720223011e-4
allele num: 3946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*10C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33914
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 692
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

14-100193083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193083
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193083
    reference: chr 14
allele count: 1
allele frequency: 3.607503607503608e-4
allele num: 2772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*19C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

14-100193093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193093
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193093
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 1992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*29C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34574
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

14-100193094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193094
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193094
    reference: chr 14
allele count: 1
allele frequency: 5.0e-4
allele num: 2000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*30G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-100193105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193105
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193105
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 1208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*41G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33301
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

14-100193110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193110
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193110
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 1098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*46C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*46C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*46C>T
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33299
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

14-100193111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100193111
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100193111
    reference: chr 14
allele count: 4
allele frequency: 4.149377593360996e-3
allele num: 964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000405779
  ensembl transcript: ENST00000423126
  gene symbol: CYP46A1
  hgvsc: ENST00000423126.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000450553
  ensembl transcript: ENST00000554176
  gene symbol: CYP46A1
  hgvsc: ENST00000554176.1:c.*47G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000369577
  ensembl transcript: ENST00000380228
  gene symbol: CYP46A1
  hgvsc: ENST00000380228.2:c.*47G>A
  variant of: http://identifiers.org/hgnc/2641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000036530
  ensembl protein: ENSP00000261835
  ensembl transcript: ENST00000261835
  gene symbol: CYP46A1
  hgvsc: ENST00000261835.3:c.*47G>A
  variant of: http://identifiers.org/hgnc/2641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33144
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1144
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

14-100204150-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204150
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204150
    reference: chr 14
allele count: 2
allele frequency: 1.656177542232527e-4
allele num: 12076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.-20G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.-20G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 132
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

14-100204152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204152
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204152
    reference: chr 14
allele count: 1
allele frequency: 8.28363154406892e-5
allele num: 12072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 59
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.334044823906083e-4
  allele num: 7496
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

14-100204174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204174
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204174
    reference: chr 14
allele count: 1
allele frequency: 8.291873963515754e-5
allele num: 12060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.5C>T
  hgvsp: ENSP00000452160.1:p.Ser2Leu
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.5C>T
  hgvsp: ENSP00000451346.1:p.Ser2Leu
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 357
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hgvs: p.Ser2Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 180
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

14-100204178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204178
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204178
    reference: chr 14
allele count: 6
allele frequency: 4.975949577044286e-4
allele num: 12058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.9C>T
  hgvsp: ENST00000554479.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.9C>T
  hgvsp: ENST00000555145.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp3Asp
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 130
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

14-100204181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204181
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204181
    reference: chr 14
allele count: 115
allele frequency: 9.530913310127632e-3
allele num: 12066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.12C>T
  hgvsp: ENST00000555145.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.12C>T
  hgvsp: ENST00000554479.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly4Gly
num of homozygotes: 3
population: Latino
  type: Population
  allele count: 1
  allele frequency: 5.494505494505495e-3
  allele num: 182
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

14-100204210-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204210
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204210
    reference: chr 14
allele count: 1
allele frequency: 8.322237017310254e-5
allele num: 12016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+13G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+13G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 194
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-100204222-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204222
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204222
    reference: chr 14
allele count: 1
allele frequency: 8.350033400133601e-5
allele num: 11976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+25C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+25C>G
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 128
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

14-100204222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204222
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204222
    reference: chr 14
allele count: 1
allele frequency: 8.350033400133601e-5
allele num: 11976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+25C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+25C>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 846
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 223
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 128
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

14-100204233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204233
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204233
    reference: chr 14
allele count: 1
allele frequency: 8.407600470825626e-5
allele num: 11894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+36C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+36C>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 191
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 126
  num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

14-100204234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100204234
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100204234
    reference: chr 14
allele count: 1
allele frequency: 8.39066957543212e-5
allele num: 11918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+37G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+37G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 560
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

14-100259833-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100259833
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100259833
    reference: chr 14
allele count: 1
allele frequency: 3.875968992248062e-3
allele num: 258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-48G>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.20G>C
  hgvsp: ENSP00000451269.1:p.Ser7Thr
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+19483G>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.20G>C
  hgvsp: ENSP00000262233.6:p.Ser7Thr
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.20G>C
  hgvsp: ENSP00000334314.4:p.Ser7Thr
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+19483G>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+594G>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+55636G>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+55636G>C
  variant of: http://identifiers.org/hgnc/3330
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser7Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

14-100259900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100259900
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100259900
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 84
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.28+55703G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+46G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+661G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.28+55703G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+19550G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+20G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+19550G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+20G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+20G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS

14-100275969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100275969
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100275969
    reference: chr 14
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16115G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16089G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35619G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41221G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41221G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35619G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16089G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16730G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16089G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

14-100275980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100275980
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100275980
    reference: chr 14
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35630G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41210G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16126G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16741G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35630G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41210G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16100G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16100G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16100G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

14-100276014-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100276014
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100276014
    reference: chr 14
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41176G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16134G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16134G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35664G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.3G>T
  hgvsp: ENSP00000452292.1:p.Met1?
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16134G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16775G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16160G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35664G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41176G>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: start lost
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

14-100276014-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100276014
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100276013
    reference: chr 14
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16166delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16140delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16781delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41170delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35670delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16140delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16140delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.9delT
  hgvsp: ENSP00000452292.1:p.Phe3LeufsTer13
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41170delT
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35670delT
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe3LeufsTer13
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: GT
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

14-100276022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100276022
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100276022
    reference: chr 14
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16142G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41168G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16142G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.10+1G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16783G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16142G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16168G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41168G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35672G>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35672G>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: c.10+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

14-100276026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100276026
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100276026
    reference: chr 14
allele count: 3
allele frequency: 2.787068004459309e-4
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-41164C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.67+16146C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.10+5C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-27+16787C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.67+16146C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.67+16146C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-27+16172C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-20+35676C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-27+35676C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-41164C>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 9.75e1
  variant carriers: 3
hgvs: c.10+5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

14-100316538-A-AGTGTTCTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316538
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316547
    reference: chr 14
allele count: 1
allele frequency: 9.321401938851603e-5
allele num: 10728
alternate allele: AGTGTTCTCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.-36_-28dupTGTTCTCTG
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

14-100316545-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316545
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316545
    reference: chr 14
allele count: 1
allele frequency: 9.324878776575905e-5
allele num: 10724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.-40T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-652T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-645T>A
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-645T>A
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

14-100316555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316555
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316555
    reference: chr 14
allele count: 71
allele frequency: 6.610800744878957e-3
allele num: 10740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-642C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.-30C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-635C>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-635C>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 3
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

14-100316573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316573
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316573
    reference: chr 14
allele count: 2
allele frequency: 1.858736059479554e-4
allele num: 10760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-624G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-617G>T
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-617G>T
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

14-100316589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316589
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316589
    reference: chr 14
allele count: 3
allele frequency: 2.786550250789523e-4
allele num: 10766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-601T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.5T>C
  hgvsp: ENSP00000451805.1:p.Met2Thr
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-608T>C
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-601T>C
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met2Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

14-100316595-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316595
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316595
    reference: chr 14
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-602A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.11A>G
  hgvsp: ENSP00000451805.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-595A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-595A>G
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn4Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

14-100316610-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316610
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316610
    reference: chr 14
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-587C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-580C>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.26C>G
  hgvsp: ENSP00000451805.1:p.Ala9Gly
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala9Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-100316612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100316612
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 100316612
    reference: chr 14
allele count: 1
allele frequency: 9.29022668153103e-5
allele num: 10764
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000334314
  ensembl transcript: ENST00000334192
  gene symbol: EML1
  hgvsc: ENST00000334192.4:c.68-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000327384
  ensembl transcript: ENST00000327921
  gene symbol: EML1
  hgvsc: ENST00000327921.9:c.-26-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452292
  ensembl transcript: ENST00000553720
  gene symbol: EML1
  hgvsc: ENST00000553720.1:c.11-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451346
  ensembl transcript: ENST00000554479
  gene symbol: EML1
  hgvsc: ENST00000554479.1:c.29-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000262233
  ensembl transcript: ENST00000262233
  gene symbol: EML1
  hgvsc: ENST00000262233.6:c.68-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451991
  ensembl transcript: ENST00000556199
  gene symbol: EML1
  hgvsc: ENST00000556199.1:c.-19-585A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451669
  ensembl transcript: ENST00000556835
  gene symbol: EML1
  hgvsc: ENST00000556835.1:c.-26-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451269
  ensembl transcript: ENST00000555096
  gene symbol: EML1
  hgvsc: ENST00000555096.1:c.68-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000451805
  ensembl transcript: ENST00000556947
  gene symbol: EML1
  hgvsc: ENST00000556947.1:c.28A>G
  hgvsp: ENSP00000451805.1:p.Lys10Glu
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452160
  ensembl transcript: ENST00000555145
  gene symbol: EML1
  hgvsc: ENST00000555145.1:c.29-578A>G
  variant of: http://identifiers.org/hgnc/3330
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066629
  ensembl protein: ENSP00000452089
  ensembl transcript: ENST00000556714
  gene symbol: EML1
  hgvsc: ENST00000556714.1:c.-26-578A>G
  variant of: http://identifiers.org/hgnc/3330
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys10Glu
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.477567298105683e-4
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 1.263e0

DP
type: SiteQuality
SIO_000300: 1.267726e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.156e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 9798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7025
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 1.267726e6

FS
type: SiteQuality
SIO_000300: 1.263e0

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.100454733360893e-4
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.359e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 3.51e0

DP
type: SiteQuality
SIO_000300: 1.265661e6

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.318716036901302e-5
allele num: 15826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e0

DP
type: SiteQuality
SIO_000300: 1.260317e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 6032
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.26374320738026e-3
allele num: 15826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.260317e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.686727565824826e-4
allele num: 3722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.985191394244202e-5
allele num: 14316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.184e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

FS
type: SiteQuality
SIO_000300: 1.902e0

QD
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

DP
type: SiteQuality
SIO_000300: 5.27487e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 9.75e1
variant carriers: 68

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

African
type: Population
allele count: 69
allele frequency: 1.801566579634465e-2
allele num: 3830
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.058441558441558e-3
allele num: 1232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.055e1

DP
type: SiteQuality
SIO_000300: 5.39425e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

GenotypeQuality
all individuals: 5505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.44140625e-4
allele num: 16384
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.328021248339973e-3
allele num: 1506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 5.75151e5

FS
type: SiteQuality
SIO_000300: 7.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.079e-1

QD
type: SiteQuality
SIO_000300: 7.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.461841457410143e-4
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.727975270479134e-4
allele num: 2588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.015399422521656e-5
allele num: 16624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.089e1

DP
type: SiteQuality
SIO_000300: 5.82502e5

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16624
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.727975270479134e-4
allele num: 2588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 5.82502e5

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37518
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.652028284331969e-5
allele num: 21496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.218e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

QD
type: SiteQuality
SIO_000300: 4.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.59649e5

FS
type: SiteQuality
SIO_000300: 2.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9912
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4678
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.802451333813987e-4
allele num: 5548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22128
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.435e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

DP
type: SiteQuality
SIO_000300: 6.66723e5

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.498830304120928e-5
allele num: 22228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

QD
type: SiteQuality
SIO_000300: 5.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.545e0

DP
type: SiteQuality
SIO_000300: 6.67833e5

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.091649694501019e-5
allele num: 19640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

DP
type: SiteQuality
SIO_000300: 5.93955e5

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 598
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.887585532746823e-4
allele num: 2046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2844
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

FS
type: SiteQuality
SIO_000300: 1.316e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.77174e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

VQSLOD
type: SiteQuality
SIO_000300: -2.645e0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 5.05e0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5780
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 3.496503496503497e-3
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.321702352630188e-4
allele num: 7566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.626368860457552e-4
allele num: 18446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.174e1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 5.70445e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.530973451327434e-4
allele num: 1808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 5.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.07e0

DP
type: SiteQuality
SIO_000300: 5.51606e5

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16600
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.230118443316413e-4
allele num: 2364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 5.39296e5

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 1.481e0

VQSLOD
type: SiteQuality
SIO_000300: -3.439e-1

GenotypeQuality
all individuals: 152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.284490145672665e-4
allele num: 2334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.951e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 1.899e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.62e-2

DP
type: SiteQuality
SIO_000300: 5.25853e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.105590062111801e-4
allele num: 3220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.346788525006347e-5
allele num: 15756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 5.19998e5

QD
type: SiteQuality
SIO_000300: 9.1e0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.273504273504274e-3
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.814e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.78671e5

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.560178051703475e-5
allele num: 11682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 5.846e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 4.58825e5

QD
type: SiteQuality
SIO_000300: 7.64e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 4.16156e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.34661998384056e-4
allele num: 7426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0643e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 3.97857e5

VQSLOD
type: SiteQuality
SIO_000300: -2.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 3.223e1

GenotypeQuality
all individuals: 340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.29976e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

FS
type: SiteQuality
SIO_000300: 3.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.862e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.16672e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 2.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.12622e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.61e-2

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.172839506172839e-3
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 1.248699271592092e-2
allele num: 1922
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 4.10138e5

QD
type: SiteQuality
SIO_000300: 1.298e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0

VQSLOD
type: SiteQuality
SIO_000300: -1.217e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 3.41473e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2673
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.698e-1

DP
type: SiteQuality
SIO_000300: 3.14514e5

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

FS
type: SiteQuality
SIO_000300: 2.158e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.912363067292645e-4
allele num: 5112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.611863313990974e-4
allele num: 6204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

FS
type: SiteQuality
SIO_000300: 2.475e0

QD
type: SiteQuality
SIO_000300: 8.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

DP
type: SiteQuality
SIO_000300: 3.13607e5

GenotypeQuality
all individuals: 552
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.09e-2

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.755e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 3.0296e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.602e-1

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1650
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 544
bin: 2.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.043e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.43e-2

DP
type: SiteQuality
SIO_000300: 2.8005e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.138e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 2.76384e5

MQ
type: SiteQuality
SIO_000300: 5.443e1

QD
type: SiteQuality
SIO_000300: 4.7e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.336448598130841e-3
allele num: 428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.66e-2

FS
type: SiteQuality
SIO_000300: 1.374e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 2.54341e5

GenotypeQuality
all individuals: 1590
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.759398496240602e-4
allele num: 2660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.318e0

DP
type: SiteQuality
SIO_000300: 2.28068e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 3.029e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
all individuals: 22
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.26982e5

QD
type: SiteQuality
SIO_000300: 8.84e0

GenotypeQuality
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.359999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.06506e5

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.028467595396729e-4
allele num: 3302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.95536e5

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.550000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.642e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.891e1

GenotypeQuality
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.036e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 1.89733e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.96e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.189e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 1.71367e5

QD
type: SiteQuality
SIO_000300: 6.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.176470588235294e-2
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1194
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.60412e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

FS
type: SiteQuality
SIO_000300: 2.642e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

QD
type: SiteQuality
SIO_000300: 7.42e0

VQSLOD
type: SiteQuality
SIO_000300: -7.871e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

FS
type: SiteQuality
SIO_000300: 8.824e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.42107e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.61e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

QD
type: SiteQuality
SIO_000300: 2.488e1

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.909999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.2788e5

GenotypeQuality
all individuals: 68
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.940357852882703e-4
allele num: 1006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.28067e5

QD
type: SiteQuality
SIO_000300: 7.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.84e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.571e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.12433e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.041e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.12548e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.063e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 1041
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 19
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 6.25e1
variant carriers: 4

African
type: Population
allele count: 4
allele frequency: 3.278688524590164e-2
allele num: 122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.056e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 1.12215e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.665955745134631e-4
allele num: 7502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.579e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.117e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 5.628e0

DP
type: SiteQuality
SIO_000300: 1.75144e5

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.695e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

FS
type: SiteQuality
SIO_000300: 6.176e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.494e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.42e-2

DP
type: SiteQuality
SIO_000300: 1.75359e5

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.337255950788981e-4
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

DP
type: SiteQuality
SIO_000300: 1.75152e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.337613697164259e-4
allele num: 7476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.420454545454545e-3
allele num: 3520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.74997e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

FS
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

African
type: Population
allele count: 62
allele frequency: 1.107142857142857e-1
allele num: 560
num of homozygotes: 3

Other
type: Population
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allele frequency: 1.538461538461539e-2
allele num: 130
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 1.30533484676504e-2
allele num: 3524
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.350454788657035e-4
allele num: 7476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.76145e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.342642320085929e-4
allele num: 7448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

DP
type: SiteQuality
SIO_000300: 1.72196e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.583e0

FS
type: SiteQuality
SIO_000300: 1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

MQ
type: SiteQuality
SIO_000300: 5.887e1

VQSLOD
type: SiteQuality
SIO_000300: -8.079e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.347708894878706e-4
allele num: 7420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.65106e5

QD
type: SiteQuality
SIO_000300: 8.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.347708894878706e-4
allele num: 7420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.65106e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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BaseQRankSum
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FS
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DP
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Latino
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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Latino
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European (Finnish)
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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African
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European (Finnish)
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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InbreedingCoeff
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MQ
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DP
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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DP
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MQ
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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FS
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ClippingRankSum
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MQRankSum
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MQ
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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South Asian
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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FS
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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MQ
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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South Asian
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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QD
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East Asian
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South Asian
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DP
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FS
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QD
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MQ
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