15-50578388-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578389
    reference: chr 15
allele count: 156
allele frequency: 1.600295439157998e-3
allele num: 97482
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-9dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-9dupT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

15-50578388-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578387
    reference: chr 15
allele count: 57
allele frequency: 5.847233335384994e-4
allele num: 97482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-9delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-9delT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18092
  bin: 2.25e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: GA
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-50578394-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578394
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578394
    reference: chr 15
allele count: 1
allele frequency: 1.03094909173385e-5
allele num: 96998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-14T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-14T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-50578398-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578398
    reference: chr 15
allele count: 1
allele frequency: 1.073329898677658e-5
allele num: 93168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-18A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-18A>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-50578398-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578398
    reference: chr 15
allele count: 1
allele frequency: 1.073329898677658e-5
allele num: 93168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-18A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-50578407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578407
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578407
    reference: chr 15
allele count: 1
allele frequency: 1.181055863942364e-5
allele num: 84670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-27T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-27T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-50578416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578416
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578416
    reference: chr 15
allele count: 1
allele frequency: 1.357552062121582e-5
allele num: 73662
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-36A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-50578421-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50578421
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50578421
    reference: chr 15
allele count: 1
allele frequency: 1.449401397222947e-5
allele num: 68994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.884-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.920-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.396-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.920-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.692-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.881-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.884-41C>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.884-41C>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

15-50581632-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581632
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581633
    reference: chr 15
allele count: 1
allele frequency: 1.662178783950002e-5
allele num: 60162
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+47dupA
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+47dupA
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

15-50581634-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581635
    reference: chr 15
allele count: 29315
allele frequency: 4.362221362459451e-1
allele num: 67202
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+45dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+45dupT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 7.5e0
  variant carriers: 5268
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 840
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 751
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 1676
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.75e1
  variant carriers: 9275
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 3634
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 1.25e1
  variant carriers: 8368
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 6799
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 10246
  bin: 2.5e0
  variant carriers: 1711
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 930
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 1123
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.25e1
  variant carriers: 694
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 1517
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 1193
genotype quality: GenotypeQuality
  all individuals: 16808
  bin: 9.75e1
  variant carriers: 14057
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 1.75e1
  variant carriers: 1891
num of homozygotes: 2374
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-50581634-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581633
    reference: chr 15
allele count: 8502
allele frequency: 1.265140918425047e-1
allele num: 67202
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+45delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+45delT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 1.25e1
  variant carriers: 1873
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 1850
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 7.5e0
  variant carriers: 1361
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 694
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.75e1
  variant carriers: 2171
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.5e0
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 6.75e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 299
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 8.25e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 395
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 312
num of homozygotes: 548
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: TA
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-50581634-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581636
    reference: chr 15
allele count: 1770
allele frequency: 2.633850183030267e-2
allele num: 67202
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+44_883+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+44_883+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+44_919+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+44_691+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+44_395+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+44_883+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+44_880+45dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+44_919+45dupTT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 1.25e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 7.5e0
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.75e1
  variant carriers: 786
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 10246
  bin: 2.5e0
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.5e0
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 2.25e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 64
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-50581634-T-TAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581637
    reference: chr 15
allele count: 38
allele frequency: 5.654593613285319e-4
allele num: 67202
alternate allele: TAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+43_691+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+43_883+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+43_883+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+43_883+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+43_395+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+43_880+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+43_919+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+43_919+45dupTTT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10246
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

15-50581634-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581634
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581632
    reference: chr 15
allele count: 67
allele frequency: 9.969941370792535e-4
allele num: 67202
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10246
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16808
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.886792452830189e-3
  allele num: 530
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 15
  allele frequency: 3.95987328405491e-3
  allele num: 3788
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 2
  allele frequency: 5.285412262156448e-4
  allele num: 3784
  num of homozygotes: 0
population: African
  type: Population
  allele count: 34
  allele frequency: 5.45046489259378e-3
  allele num: 6238
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TAA
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

15-50581636-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581636
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581636
    reference: chr 15
allele count: 1336
allele frequency: 2.105263157894737e-2
allele num: 63460
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+44T>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+44T>A
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 2.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 1.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 7.5e0
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 1.75e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 5.25e1
  variant carriers: 12
num of homozygotes: 23
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-50581646-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581647
    reference: chr 15
allele count: 6
allele frequency: 5.913893707617095e-5
allele num: 101456
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+33dupG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+33dupG
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/15-50581646-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
allele count: 2
allele frequency: 1.971297902539032e-5
allele num: 101456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+34T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+34T>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

15-50581646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
allele count: 1
allele frequency: 9.856489512695158e-6
allele num: 101456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+34T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+34T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-50581646-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581646
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581645
    reference: chr 15
allele count: 6
allele frequency: 5.913893707617095e-5
allele num: 101456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+33delG
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+33delG
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: AC
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/15-50581647-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581647
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581647
    reference: chr 15
allele count: 5
allele frequency: 5.175983436853002e-5
allele num: 96600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+33G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+33G>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15472
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9268
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-50581647-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581647
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581645
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 96600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+31_883+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+31_691+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+31_883+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+31_883+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+31_395+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+31_919+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+31_919+32delAT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+31_880+32delAT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: CAT
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-50581649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581649
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581649
    reference: chr 15
allele count: 2
allele frequency: 1.914461844775434e-5
allele num: 104468
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+31A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+31A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

15-50581650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581650
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581650
    reference: chr 15
allele count: 1
allele frequency: 9.420808682217281e-6
allele num: 106148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+30T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+30T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-50581651-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581651
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581651
    reference: chr 15
allele count: 1
allele frequency: 9.37681675824691e-6
allele num: 106646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+29G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+29G>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19360
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-50581656-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581656
    reference: chr 15
allele count: 3
allele frequency: 2.644989508208284e-5
allele num: 113422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+24A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+24A>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-50581662-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581662
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581662
    reference: chr 15
allele count: 3
allele frequency: 2.546819023040223e-5
allele num: 117794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+18A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+18A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-50581666-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581666
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581666
    reference: chr 15
allele count: 4
allele frequency: 3.353397830351604e-5
allele num: 119282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+14A>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+14A>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

15-50581667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581667
    reference: chr 15
allele count: 1
allele frequency: 8.36988181726874e-6
allele num: 119476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+13C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+13C>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-50581673-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581673
    reference: chr 15
allele count: 143
allele frequency: 1.187648456057007e-3
allele num: 120406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.691+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.883+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.880+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.883+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.919+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.883+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.395+7A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.919+7A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29232
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
hgvs: c.919+7A>G
num of homozygotes: 1
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-50581692-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581692
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581692
    reference: chr 15
allele count: 3
allele frequency: 2.475329218786098e-5
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.868G>C
  hgvsp: ENSP00000453463.1:p.Asp290His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.907G>C
  hgvsp: ENSP00000395771.2:p.Asp303His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.871G>C
  hgvsp: ENSP00000379728.3:p.Asp291His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.907G>C
  hgvsp: ENSP00000220429.8:p.Asp303His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.871G>C
  hgvsp: ENSP00000370259.3:p.Asp291His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.871G>C
  hgvsp: ENSP00000351923.4:p.Asp291His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.383G>C
  hgvsp: ENSP00000453806.1:p.Asp129His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.679G>C
  hgvsp: ENSP00000442500.1:p.Asp227His
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp303His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

15-50581709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581709
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581709
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.854T>C
  hgvsp: ENSP00000351923.4:p.Ile285Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.854T>C
  hgvsp: ENSP00000370259.3:p.Ile285Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.851T>C
  hgvsp: ENSP00000453463.1:p.Ile284Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.854T>C
  hgvsp: ENSP00000379728.3:p.Ile285Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.890T>C
  hgvsp: ENSP00000220429.8:p.Ile297Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.366T>C
  hgvsp: ENSP00000453806.1:p.Ile123Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.662T>C
  hgvsp: ENSP00000442500.1:p.Ile221Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.890T>C
  hgvsp: ENSP00000395771.2:p.Ile297Thr
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile297Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-50581712-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581712
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581712
    reference: chr 15
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.848C>G
  hgvsp: ENSP00000453463.1:p.Pro283Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.851C>G
  hgvsp: ENSP00000379728.3:p.Pro284Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.887C>G
  hgvsp: ENSP00000220429.8:p.Pro296Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.363C>G
  hgvsp: ENSP00000453806.1:p.Pro122Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.659C>G
  hgvsp: ENSP00000442500.1:p.Pro220Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.887C>G
  hgvsp: ENSP00000395771.2:p.Pro296Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.851C>G
  hgvsp: ENSP00000370259.3:p.Pro284Arg
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.851C>G
  hgvsp: ENSP00000351923.4:p.Pro284Arg
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro296Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-50581724-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581724
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581724
    reference: chr 15
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.875G>T
  hgvsp: ENSP00000220429.8:p.Gly292Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.647G>T
  hgvsp: ENSP00000442500.1:p.Gly216Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.839G>T
  hgvsp: ENSP00000370259.3:p.Gly280Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.351G>T
  hgvsp: ENSP00000453806.1:p.Gly118Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.839G>T
  hgvsp: ENSP00000379728.3:p.Gly280Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.839G>T
  hgvsp: ENSP00000351923.4:p.Gly280Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.875G>T
  hgvsp: ENSP00000395771.2:p.Gly292Val
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.836G>T
  hgvsp: ENSP00000453463.1:p.Gly279Val
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly292Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

15-50581746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581746
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581746
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.853T>C
  hgvsp: ENST00000429662.2:c.853T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.814T>C
  hgvsp: ENST00000560825.1:c.814T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.853T>C
  hgvsp: ENST00000220429.8:c.853T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.329T>C
  hgvsp: ENST00000561010.1:c.329T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.625T>C
  hgvsp: ENST00000543881.1:c.625T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.817T>C
  hgvsp: ENST00000359031.4:c.817T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.817T>C
  hgvsp: ENST00000396464.3:c.817T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.817T>C
  hgvsp: ENST00000380877.3:c.817T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu285Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-50581757-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581757
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581757
    reference: chr 15
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.806A>C
  hgvsp: ENSP00000370259.3:p.Gln269Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.842A>C
  hgvsp: ENSP00000220429.8:p.Gln281Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.614A>C
  hgvsp: ENSP00000442500.1:p.Gln205Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.806A>C
  hgvsp: ENSP00000379728.3:p.Gln269Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.318A>C
  hgvsp: ENSP00000453806.1:p.Gln107Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.842A>C
  hgvsp: ENSP00000395771.2:p.Gln281Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.806A>C
  hgvsp: ENSP00000351923.4:p.Gln269Pro
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.803A>C
  hgvsp: ENSP00000453463.1:p.Gln268Pro
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln281Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-50581768-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581768
    reference: chr 15
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.831A>T
  hgvsp: ENST00000429662.2:c.831A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.795A>T
  hgvsp: ENST00000359031.4:c.795A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.795A>T
  hgvsp: ENST00000380877.3:c.795A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.831A>T
  hgvsp: ENST00000220429.8:c.831A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.307A>T
  hgvsp: ENST00000561010.1:c.307A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.792A>T
  hgvsp: ENST00000560825.1:c.792A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.795A>T
  hgvsp: ENST00000396464.3:c.795A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.603A>T
  hgvsp: ENST00000543881.1:c.603A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr277Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-50581783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581783
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581783
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.780C>T
  hgvsp: ENST00000396464.3:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.588C>T
  hgvsp: ENST00000543881.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.816C>T
  hgvsp: ENST00000220429.8:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.292C>T
  hgvsp: ENST00000561010.1:c.292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.816C>T
  hgvsp: ENST00000429662.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.780C>T
  hgvsp: ENST00000380877.3:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.777C>T
  hgvsp: ENST00000560825.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.780C>T
  hgvsp: ENST00000359031.4:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val272Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-50581793-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581793
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581793
    reference: chr 15
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.578G>C
  hgvsp: ENSP00000442500.1:p.Gly193Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.806G>C
  hgvsp: ENSP00000220429.8:p.Gly269Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.770G>C
  hgvsp: ENSP00000370259.3:p.Gly257Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.282G>C
  hgvsp: ENSP00000453806.1:p.Gly95Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.770G>C
  hgvsp: ENSP00000379728.3:p.Gly257Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.767G>C
  hgvsp: ENSP00000453463.1:p.Gly256Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.806G>C
  hgvsp: ENSP00000395771.2:p.Gly269Ala
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.770G>C
  hgvsp: ENSP00000351923.4:p.Gly257Ala
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly269Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-50581817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581817
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581817
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.746T>C
  hgvsp: ENSP00000351923.4:p.Ile249Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.782T>C
  hgvsp: ENSP00000395771.2:p.Ile261Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.554T>C
  hgvsp: ENSP00000442500.1:p.Ile185Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.258T>C
  hgvsp: ENSP00000453806.1:p.Ile87Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.746T>C
  hgvsp: ENSP00000370259.3:p.Ile249Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.746T>C
  hgvsp: ENSP00000379728.3:p.Ile249Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.743T>C
  hgvsp: ENSP00000453463.1:p.Ile248Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.782T>C
  hgvsp: ENSP00000220429.8:p.Ile261Thr
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile261Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-50581821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581821
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581821
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.742G>A
  hgvsp: ENSP00000351923.4:p.Ala248Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.742G>A
  hgvsp: ENSP00000379728.3:p.Ala248Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.739G>A
  hgvsp: ENSP00000453463.1:p.Ala247Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.778G>A
  hgvsp: ENSP00000395771.2:p.Ala260Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.742G>A
  hgvsp: ENSP00000370259.3:p.Ala248Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.550G>A
  hgvsp: ENSP00000442500.1:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.778G>A
  hgvsp: ENSP00000220429.8:p.Ala260Thr
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.254G>A
  hgvsp: ENSP00000453806.1:p.Ala86Thr
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala260Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-50581822-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581822
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581822
    reference: chr 15
allele count: 347
allele frequency: 2.877996184788919e-3
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.253T>G
  hgvsp: ENST00000561010.1:c.253T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.777T>G
  hgvsp: ENST00000220429.8:c.777T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.741T>G
  hgvsp: ENST00000396464.3:c.741T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.777T>G
  hgvsp: ENST00000429662.2:c.777T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.741T>G
  hgvsp: ENST00000380877.3:c.741T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.741T>G
  hgvsp: ENST00000359031.4:c.741T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.549T>G
  hgvsp: ENST00000543881.1:c.549T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.738T>G
  hgvsp: ENST00000560825.1:c.738T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 3
hgvs: p.Gly259Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-50581848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581848
    reference: chr 15
allele count: 3
allele frequency: 2.472636159831201e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.715G>A
  hgvsp: ENSP00000351923.4:p.Val239Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.751G>A
  hgvsp: ENSP00000395771.2:p.Val251Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.751G>A
  hgvsp: ENSP00000220429.8:p.Val251Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.712G>A
  hgvsp: ENSP00000453463.1:p.Val238Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.715G>A
  hgvsp: ENSP00000370259.3:p.Val239Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.715G>A
  hgvsp: ENSP00000379728.3:p.Val239Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.227G>A
  hgvsp: ENSP00000453806.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.523G>A
  hgvsp: ENSP00000442500.1:p.Val175Ile
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val251Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/15-50581866-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581866
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581866
    reference: chr 15
allele count: 1
allele frequency: 8.328058896032513e-6
allele num: 120076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-1G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-4G>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 1
hgvs: c.734-1G>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-50581867-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581867
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581867
    reference: chr 15
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-5A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-2A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-2A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 8.25e1
  variant carriers: 0
hgvs: c.734-2A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-50581869-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581870
    reference: chr 15
allele count: 1918
allele frequency: 2.15205780710022e-2
allele num: 89124
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-5dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-8dupT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-5dupT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 3.25e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 4.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 440
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 4.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 651
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 5.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 5.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 6.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.75e1
  variant carriers: 19
hgvs: c.734-5dupT
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

15-50581869-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581871
    reference: chr 15
allele count: 8
allele frequency: 8.976257798123962e-5
allele num: 89124
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-6_698-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-6_698-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-6_698-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-6_210-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-9_698-8dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-6_734-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-6_506-5dupTT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-6_734-5dupTT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8292
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 1.25e1
  variant carriers: 2
hgvs: c.734-6_734-5dupTT
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

15-50581869-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581868
    reference: chr 15
allele count: 38188
allele frequency: 4.284816659934473e-1
allele num: 89124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-5delT
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-8delT
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 3.25e1
  variant carriers: 7386
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 599
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 5979
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 1165
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 802
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 4.25e1
  variant carriers: 4234
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 7125
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 4.75e1
  variant carriers: 2790
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 5210
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 2440
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 354
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 5.25e1
  variant carriers: 1774
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.75e1
  variant carriers: 624
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 5.25e1
  variant carriers: 1760
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 1541
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.75e1
  variant carriers: 1395
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 5.75e1
  variant carriers: 1554
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 1487
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 1907
hgvs: c.734-5delT
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: GA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-50581869-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581867
    reference: chr 15
allele count: 1152
allele frequency: 1.292581122929851e-2
allele num: 89124
alternate allele: G
canonical: false
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 4.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 3.25e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 437
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 1.75e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 8292
  bin: 2.5e0
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 5.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 7.5e0
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 14945
  bin: 9.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 1.25e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 3.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 5.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 6.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 6.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 3.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 8.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 26
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 112
  allele frequency: 1.709923664122137e-2
  allele num: 6550
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 642
  allele frequency: 1.299858270905042e-2
  allele num: 49390
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 9
  allele frequency: 1.384615384615385e-2
  allele num: 650
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 54
  allele frequency: 1.083902047370534e-2
  allele num: 4982
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
reference allele: GAA
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-50581870-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581870
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581870
    reference: chr 15
allele count: 2
allele frequency: 4.462293618920125e-4
allele num: 4482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-8T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-5T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-5T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
hgvs: c.734-5T>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

15-50581875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581875
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581875
    reference: chr 15
allele count: 1
allele frequency: 8.482915408367548e-6
allele num: 117884
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-10T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-13T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-10T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-50581878-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581878
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581878
    reference: chr 15
allele count: 1
allele frequency: 8.494011721736177e-6
allele num: 117730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-16T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-13T>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-13T>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-50581887-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581887
    reference: chr 15
allele count: 15
allele frequency: 1.29874627692734e-4
allele num: 115496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-25G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-22G>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-22G>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7190
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

15-50581898-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581898
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581898
    reference: chr 15
allele count: 1
allele frequency: 8.878471482349599e-6
allele num: 112632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-33A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-36A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-33A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

15-50581900-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581900
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581900
    reference: chr 15
allele count: 3
allele frequency: 2.664724378675099e-5
allele num: 112582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-38A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-35A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-35A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-50581902-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581902
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581902
    reference: chr 15
allele count: 1
allele frequency: 8.889995199402592e-6
allele num: 112486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-40A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-37A>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-37A>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-50581905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581905
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581905
    reference: chr 15
allele count: 92
allele frequency: 8.252897484660375e-4
allele num: 111476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-40G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-43G>A
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

15-50581906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581906
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581906
    reference: chr 15
allele count: 909
allele frequency: 8.197312652177834e-3
allele num: 110890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-44C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-41C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-41C>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 2.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14300
  bin: 1.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 2.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 1.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5161
  bin: 9.75e1
  variant carriers: 903
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5725
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-50581910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581910
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581910
    reference: chr 15
allele count: 12
allele frequency: 1.086287431654416e-4
allele num: 110468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-45A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-48A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-45A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-50581914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581914
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581914
    reference: chr 15
allele count: 3
allele frequency: 2.74992208554091e-5
allele num: 109094
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.734-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.698-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.698-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.734-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.210-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.506-49A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.698-52A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.698-49A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

15-50581915-AGAAACCTATTTTTGCTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50581915
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50581897
    reference: chr 15
allele count: 1
allele frequency: 9.148293843198244e-6
allele num: 109310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4349
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: AGAAACCTATTTTTGCTTT
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-50592956-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592956
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592956
    reference: chr 15
allele count: 1
allele frequency: 8.485074753508579e-6
allele num: 117854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505+30A>G
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733+30A>G
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

15-50592963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592963
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592963
    reference: chr 15
allele count: 1
allele frequency: 8.446802040747373e-6
allele num: 118388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209+23G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697+23G>A
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

15-50592966-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592966
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592966
    reference: chr 15
allele count: 1
allele frequency: 8.417366710998132e-6
allele num: 118802
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697+20T>C
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697+20T>C
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-50592974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592974
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592974
    reference: chr 15
allele count: 8
allele frequency: 6.686726847208291e-5
allele num: 119640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697+12G>A
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697+12G>A
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20246
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

15-50592975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592975
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592975
    reference: chr 15
allele count: 2
allele frequency: 1.668891855807744e-5
allele num: 119840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697+11C>T
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209+11C>T
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27981
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-50592986-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50592986
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50592986
    reference: chr 15
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.733G>T
  hgvsp: ENSP00000220429.8:p.Val245Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.697G>T
  hgvsp: ENSP00000370259.3:p.Val233Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.697G>T
  hgvsp: ENSP00000351923.4:p.Val233Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.505G>T
  hgvsp: ENSP00000442500.1:p.Val169Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.733G>T
  hgvsp: ENSP00000395771.2:p.Val245Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.209G>T
  hgvsp: ENSP00000453806.1:p.Val71Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.697G>T
  hgvsp: ENSP00000453463.1:p.Val233Leu
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.697G>T
  hgvsp: ENSP00000379728.3:p.Val233Leu
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val245Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-50593003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50593003
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50593003
    reference: chr 15
allele count: 381
allele frequency: 3.149072635302675e-3
allele num: 120988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.680A>G
  hgvsp: ENSP00000379728.3:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.680A>G
  hgvsp: ENSP00000351923.4:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.716A>G
  hgvsp: ENSP00000395771.2:p.Asn239Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.488A>G
  hgvsp: ENSP00000442500.1:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.192A>G
  hgvsp: ENSP00000453806.1:p.Asn65Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.680A>G
  hgvsp: ENSP00000370259.3:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.716A>G
  hgvsp: ENSP00000220429.8:p.Asn239Ser
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.680A>G
  hgvsp: ENSP00000453463.1:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 28567
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn239Ser
num of homozygotes: 2
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-50593004-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50593004
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50593004
    reference: chr 15
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.715A>C
  hgvsp: ENSP00000395771.2:p.Asn239His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.715A>C
  hgvsp: ENSP00000220429.8:p.Asn239His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.679A>C
  hgvsp: ENSP00000370259.3:p.Asn227His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.679A>C
  hgvsp: ENSP00000453463.1:p.Asn227His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.487A>C
  hgvsp: ENSP00000442500.1:p.Asn163His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.679A>C
  hgvsp: ENSP00000379728.3:p.Asn227His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.191A>C
  hgvsp: ENSP00000453806.1:p.Asn65His
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.679A>C
  hgvsp: ENSP00000351923.4:p.Asn227His
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn239His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

15-50593041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50593041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50593041
    reference: chr 15
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.154A>G
  hgvsp: ENST00000561010.1:c.154A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.642A>G
  hgvsp: ENST00000359031.4:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.642A>G
  hgvsp: ENST00000560825.1:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.642A>G
  hgvsp: ENST00000396464.3:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.678A>G
  hgvsp: ENST00000429662.2:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.450A>G
  hgvsp: ENST00000543881.1:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.678A>G
  hgvsp: ENST00000220429.8:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.642A>G
  hgvsp: ENST00000380877.3:c.642A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr226Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-50593044-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50593044
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50593044
    reference: chr 15
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.639T>C
  hgvsp: ENST00000396464.3:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.639T>C
  hgvsp: ENST00000359031.4:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.639T>C
  hgvsp: ENST00000380877.3:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.151T>C
  hgvsp: ENST00000561010.1:c.151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.675T>C
  hgvsp: ENST00000429662.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.675T>C
  hgvsp: ENST00000220429.8:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.447T>C
  hgvsp: ENST00000543881.1:c.447T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.639T>C
  hgvsp: ENST00000560825.1:c.639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala225Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-50593053-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50593053
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 50593053
    reference: chr 15
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000442500
  ensembl transcript: ENST00000543881
  gene symbol: GABPB1
  hgvsc: ENST00000543881.1:c.438A>G
  hgvsp: ENST00000543881.1:c.438A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000370259
  ensembl transcript: ENST00000380877
  gene symbol: GABPB1
  hgvsc: ENST00000380877.3:c.630A>G
  hgvsp: ENST00000380877.3:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000395771
  ensembl transcript: ENST00000429662
  gene symbol: GABPB1
  hgvsc: ENST00000429662.2:c.666A>G
  hgvsp: ENST00000429662.2:c.666A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000220429
  ensembl transcript: ENST00000220429
  gene symbol: GABPB1
  hgvsc: ENST00000220429.8:c.666A>G
  hgvsp: ENST00000220429.8:c.666A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453806
  ensembl transcript: ENST00000561010
  gene symbol: GABPB1
  hgvsc: ENST00000561010.1:c.142A>G
  hgvsp: ENST00000561010.1:c.142A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000351923
  ensembl transcript: ENST00000359031
  gene symbol: GABPB1
  hgvsc: ENST00000359031.4:c.630A>G
  hgvsp: ENST00000359031.4:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000379728
  ensembl transcript: ENST00000396464
  gene symbol: GABPB1
  hgvsc: ENST00000396464.3:c.630A>G
  hgvsp: ENST00000396464.3:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104064
  ensembl protein: ENSP00000453463
  ensembl transcript: ENST00000560825
  gene symbol: GABPB1
  hgvsc: ENST00000560825.1:c.630A>G
  hgvsp: ENST00000560825.1:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser222Ser
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2289
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 860
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1879
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 754
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1063
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1954
bin: 9.75e1
variant carriers: 120

GenotypeQuality
all individuals: 22431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18092
bin: 2.25e1
variant carriers: 5

Latino
type: Population
allele count: 9
allele frequency: 9.459743535841917e-4
allele num: 9514
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.291989664082687e-3
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 98
allele frequency: 7.510729613733906e-3
allele num: 13048
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.757052389176742e-4
allele num: 6948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 8.167451755052424e-4
allele num: 52648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.350221e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.8e0

GenotypeQuality
all individuals: 729
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22431
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1578
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1063
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 860
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 671
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3092
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.102165230187093e-4
allele num: 9514
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.317789291882556e-4
allele num: 6948
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 9.963212752912324e-4
allele num: 13048
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.331545814875262e-4
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.674480910917615e-4
allele num: 5972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 6.837866585625285e-4
allele num: 52648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.350221e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
all individuals: 19388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.390983000739098e-5
allele num: 13530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 1.161657e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.566e0

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -3.261e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 317
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49994
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.641754546843955e-5
allele num: 13086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.097505e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.097694840834248e-4
allele num: 9110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13086
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.097505e6

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 904
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.230251126276819e-5
allele num: 44838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 9.28476e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7906
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.224199288256228e-4
allele num: 4496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 8.18924e5

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 1.726e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.413e0

GenotypeQuality
all individuals: 20380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 791
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.49500998003992e-4
allele num: 4008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7064
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.522e1

DP
type: SiteQuality
SIO_000300: 7.86752e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.395e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 6.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 4655
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5551
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2206
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10114
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10802
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34050
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.808988764044944e-4
allele num: 3560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 4.79e0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.69e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.071877e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 774

GenotypeQuality
all individuals: 1064
bin: 6.75e1
variant carriers: 841

GenotypeQuality
all individuals: 3589
bin: 7.5e0
variant carriers: 1956

GenotypeQuality
all individuals: 1945
bin: 3.25e1
variant carriers: 1380

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 1054

GenotypeQuality
all individuals: 2762
bin: 2.25e1
variant carriers: 1722

GenotypeQuality
all individuals: 1425
bin: 5.25e1
variant carriers: 1136

GenotypeQuality
all individuals: 3079
bin: 1.25e1
variant carriers: 2267

GenotypeQuality
all individuals: 1852
bin: 3.75e1
variant carriers: 1401

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 751

GenotypeQuality
all individuals: 965
bin: 8.25e1
variant carriers: 772

GenotypeQuality
all individuals: 1199
bin: 7.75e1
variant carriers: 1004

East Asian
type: Population
allele count: 284
allele frequency: 7.497360084477296e-2
allele num: 3788
num of homozygotes: 1

Other
type: Population
allele count: 252
allele frequency: 4.754716981132076e-1
allele num: 530
num of homozygotes: 30

European (Non-Finnish)
type: Population
allele count: 17843
allele frequency: 4.852069396856475e-1
allele num: 36774
num of homozygotes: 1563

European (Finnish)
type: Population
allele count: 1454
allele frequency: 3.842494714587738e-1
allele num: 3784
num of homozygotes: 120

African
type: Population
allele count: 2293
allele frequency: 3.675857646681629e-1
allele num: 6238
num of homozygotes: 160

Latino
type: Population
allele count: 3694
allele frequency: 4.571782178217822e-1
allele num: 8080
num of homozygotes: 284

South Asian
type: Population
allele count: 3495
allele frequency: 4.364385614385614e-1
allele num: 8008
num of homozygotes: 216

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.054048e6

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 6.035e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 2103
bin: 2.75e1
variant carriers: 355

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 223

GenotypeQuality
all individuals: 16808
bin: 9.75e1
variant carriers: 4749

GenotypeQuality
all individuals: 1852
bin: 3.75e1
variant carriers: 320

GenotypeQuality
all individuals: 2762
bin: 2.25e1
variant carriers: 316

GenotypeQuality
all individuals: 1439
bin: 5.75e1
variant carriers: 343

GenotypeQuality
all individuals: 10246
bin: 2.5e0
variant carriers: 235

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 181

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 244

GenotypeQuality
all individuals: 2620
bin: 1.75e1
variant carriers: 397

GenotypeQuality
all individuals: 1579
bin: 4.25e1
variant carriers: 311

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 176

East Asian
type: Population
allele count: 1706
allele frequency: 4.503695881731785e-1
allele num: 3788
num of homozygotes: 189

South Asian
type: Population
allele count: 811
allele frequency: 1.012737262737263e-1
allele num: 8008
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 1950
allele frequency: 5.302659487681514e-2
allele num: 36774
num of homozygotes: 11

Other
type: Population
allele count: 44
allele frequency: 8.30188679245283e-2
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 1294
allele frequency: 1.601485148514852e-1
allele num: 8080
num of homozygotes: 63

African
type: Population
allele count: 2196
allele frequency: 3.520359089451747e-1
allele num: 6238
num of homozygotes: 255

European (Finnish)
type: Population
allele count: 501
allele frequency: 1.32399577167019e-1
allele num: 3784
num of homozygotes: 17

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 1.054048e6

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

MQ
type: SiteQuality
SIO_000300: 6.035e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.7e0

GenotypeQuality
all individuals: 1064
bin: 6.75e1
variant carriers: 81

GenotypeQuality
all individuals: 3079
bin: 1.25e1
variant carriers: 166

GenotypeQuality
all individuals: 2620
bin: 1.75e1
variant carriers: 177

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 35

GenotypeQuality
all individuals: 1852
bin: 3.75e1
variant carriers: 165

GenotypeQuality
all individuals: 1945
bin: 3.25e1
variant carriers: 171

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 70

GenotypeQuality
all individuals: 1425
bin: 5.25e1
variant carriers: 146

GenotypeQuality
all individuals: 16808
bin: 9.75e1
variant carriers: 174

GenotypeQuality
all individuals: 965
bin: 8.25e1
variant carriers: 47

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 176

Other
type: Population
allele count: 12
allele frequency: 2.264150943396226e-2
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1083
allele frequency: 2.945015500081579e-2
allele num: 36774
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.319957761351637e-3
allele num: 3788
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 2.356524527092017e-2
allele num: 6238
num of homozygotes: 0

South Asian
type: Population
allele count: 241
allele frequency: 3.00949050949051e-2
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 35
allele frequency: 9.249471458773785e-3
allele num: 3784
num of homozygotes: 0

Latino
type: Population
allele count: 247
allele frequency: 3.056930693069307e-2
allele num: 8080
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

QD
type: SiteQuality
SIO_000300: 1.199e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.054048e6

GenotypeQuality
all individuals: 2762
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3079
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 965
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1266
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1852
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1199
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variant carriers: 2

GenotypeQuality
all individuals: 1064
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16808
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2103
bin: 2.75e1
variant carriers: 3

South Asian
type: Population
allele count: 6
allele frequency: 7.492507492507493e-4
allele num: 8008
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 8.663366336633663e-4
allele num: 8080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.285412262156448e-4
allele num: 3784
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.809233728759218e-4
allele num: 6238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 5.166693859792245e-4
allele num: 36774
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.639915522703273e-4
allele num: 3788
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 6.035e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 1.054048e6

VQSLOD
type: SiteQuality
SIO_000300: 6.7e0

Latino
type: Population
allele count: 6
allele frequency: 7.425742574257426e-4
allele num: 8080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.631587534671235e-4
allele num: 36774
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.746253746253746e-4
allele num: 8008
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.035e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 1.054048e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 3575
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 3323
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4743
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2845
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1870
bin: 6.75e1
variant carriers: 17

GenotypeQuality
all individuals: 11421
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 3648
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 28

GenotypeQuality
all individuals: 3250
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2768
bin: 9.75e1
variant carriers: 1260

Other
type: Population
allele count: 12
allele frequency: 2.105263157894737e-2
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 318
allele frequency: 7.737226277372262e-2
allele num: 4110
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 400
allele frequency: 1.022024630793602e-2
allele num: 39138
num of homozygotes: 3

African
type: Population
allele count: 12
allele frequency: 4.216444132115249e-3
allele num: 2846
num of homozygotes: 0

Latino
type: Population
allele count: 423
allele frequency: 5.736371033360456e-2
allele num: 7374
num of homozygotes: 8

East Asian
type: Population
allele count: 150
allele frequency: 9.014423076923077e-2
allele num: 1664
num of homozygotes: 2

South Asian
type: Population
allele count: 21
allele frequency: 2.706883217324053e-3
allele num: 7758
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-2

DP
type: SiteQuality
SIO_000300: 1.260332e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

GenotypeQuality
all individuals: 2237
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.220703125e-4
allele num: 8192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.954154727793696e-5
allele num: 55840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 1.413984e6

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.022061045633122e-4
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

DP
type: SiteQuality
SIO_000300: 1.413984e6

FS
type: SiteQuality
SIO_000300: 2.183e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
all individuals: 10152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.183e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

DP
type: SiteQuality
SIO_000300: 1.413984e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.022061045633122e-4
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.372492836676218e-5
allele num: 55840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.517666516313337e-5
allele num: 13302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.073e1

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

DP
type: SiteQuality
SIO_000300: 1.413984e6

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.996001599360256e-5
allele num: 10004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.429420505200594e-5
allele num: 53840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.333e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

FS
type: SiteQuality
SIO_000300: 4.137e0

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 6.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.454706e6

QD
type: SiteQuality
SIO_000300: 8.8e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454706e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.333e-1

MQ
type: SiteQuality
SIO_000300: 6.036e1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.137e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 8.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.362685907819172e-5
allele num: 13582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.738707097402371e-5
allele num: 57514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.332e-1

DP
type: SiteQuality
SIO_000300: 1.489916e6

GenotypeQuality
all individuals: 1853
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2005
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variant carriers: 0

GenotypeQuality
all individuals: 1052
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variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.174630506528914e-5
allele num: 13938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.498e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.042e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 1.506503e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeQuality
all individuals: 609
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
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variant carriers: 0

GenotypeQuality
all individuals: 1938
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3267
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variant carriers: 1

GenotypeQuality
all individuals: 1970
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.34661998384056e-4
allele num: 7426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

QD
type: SiteQuality
SIO_000300: 4.96e0

VQSLOD
type: SiteQuality
SIO_000300: -2.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.526298e6

GenotypeQuality
all individuals: 864
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8398
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 3321
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variant carriers: 3

GenotypeQuality
all individuals: 1085
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.820361205733016e-5
allele num: 62236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.847e0

QD
type: SiteQuality
SIO_000300: 1.377e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.604834e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.288e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3332
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.991026919242273e-4
allele num: 10030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 6.03e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 1.654383e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
all individuals: 2837
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3336
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8922
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.086427267194157e-5
allele num: 65720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.672061e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 960
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.056e1

FS
type: SiteQuality
SIO_000300: 6.188e0

DP
type: SiteQuality
SIO_000300: 1.675324e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.018e0

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 142

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

African
type: Population
allele count: 137
allele frequency: 1.324695416747244e-2
allele num: 10342
num of homozygotes: 1

Latino
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allele count: 6
allele frequency: 5.211047420531526e-4
allele num: 11514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.445e1

DP
type: SiteQuality
SIO_000300: 1.694377e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.298e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 1.705692e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.381e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.088e-1

DP
type: SiteQuality
SIO_000300: 1.7083e6

MQRankSum
type: SiteQuality
SIO_000300: -1.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.465e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 1.708508e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.709237e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.565e0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

FS
type: SiteQuality
SIO_000300: 4.052e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.603e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.546e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.118e0

FS
type: SiteQuality
SIO_000300: 3.904e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.522e1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.131e1

DP
type: SiteQuality
SIO_000300: 1.71047e6

GenotypeQuality
all individuals: 37537
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 1.474e0

MQRankSum
type: SiteQuality
SIO_000300: -1.645e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.37e-2

DP
type: SiteQuality
SIO_000300: 1.71049e6

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.710041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

QD
type: SiteQuality
SIO_000300: 1.015e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.378e0

MQRankSum
type: SiteQuality
SIO_000300: -1.266e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.97e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3378
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variant carriers: 1

GenotypeQuality
all individuals: 1105
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.51e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.915e0

DP
type: SiteQuality
SIO_000300: 1.709996e6

VQSLOD
type: SiteQuality
SIO_000300: -6.598000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

GenotypeQuality
all individuals: 2824
bin: 7.25e1
variant carriers: 6

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 259

GenotypeQuality
all individuals: 36984
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variant carriers: 8

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 208
allele frequency: 3.138390971090591e-3
allele num: 66276
num of homozygotes: 0

African
type: Population
allele count: 126
allele frequency: 1.240401653868872e-2
allele num: 10158
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.38121546961326e-3
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.838e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.76e-1

DP
type: SiteQuality
SIO_000300: 1.770308e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.089e0

FS
type: SiteQuality
SIO_000300: 3.8446e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 2149
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.352e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.725885e6

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.706e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1930
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 183
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2527
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GenotypeQuality
all individuals: 917
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -5.492e-1

QD
type: SiteQuality
SIO_000300: 7.21e0

DP
type: SiteQuality
SIO_000300: 1.827273e6

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 1949
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.179e0

DP
type: SiteQuality
SIO_000300: 1.849334e6

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 39

GenotypeQuality
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variant carriers: 324

GenotypeQuality
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bin: 3.75e1
variant carriers: 201

GenotypeQuality
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bin: 3.25e1
variant carriers: 204

GenotypeQuality
all individuals: 2427
bin: 1.25e1
variant carriers: 325

GenotypeQuality
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bin: 2.75e1
variant carriers: 228

GenotypeQuality
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variant carriers: 277

GenotypeQuality
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bin: 5.75e1
variant carriers: 95

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 1890
bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 166

GenotypeQuality
all individuals: 1487
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variant carriers: 37

GenotypeQuality
all individuals: 1411
bin: 9.25e1
variant carriers: 16

African
type: Population
allele count: 123
allele frequency: 1.606583072100314e-2
allele num: 7656
num of homozygotes: 0

East Asian
type: Population
allele count: 123
allele frequency: 1.877862595419847e-2
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.692307692307692e-2
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 29
allele frequency: 5.820955439582497e-3
allele num: 4982
num of homozygotes: 0

Latino
type: Population
allele count: 158
allele frequency: 1.876930387265384e-2
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 876
allele frequency: 1.77363838833772e-2
allele num: 49390
num of homozygotes: 0

South Asian
type: Population
allele count: 598
allele frequency: 5.209966893186967e-2
allele num: 11478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.189746e6

QD
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 1890
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variant carriers: 0

GenotypeQuality
all individuals: 2446
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GenotypeQuality
all individuals: 1411
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GenotypeQuality
all individuals: 2737
bin: 7.5e0
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GenotypeQuality
all individuals: 1800
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14945
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2099
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.098805426199635e-5
allele num: 49390
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.612330198537095e-4
allele num: 7656
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.74246384387524e-4
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-1

DP
type: SiteQuality
SIO_000300: 2.189746e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 1380

GenotypeQuality
all individuals: 2446
bin: 3.25e1
variant carriers: 1687

GenotypeQuality
all individuals: 2427
bin: 1.25e1
variant carriers: 1161

GenotypeQuality
all individuals: 8292
bin: 2.5e0
variant carriers: 783

GenotypeQuality
all individuals: 2737
bin: 7.5e0
variant carriers: 1083

GenotypeQuality
all individuals: 2091
bin: 6.25e1
variant carriers: 1596

GenotypeQuality
all individuals: 14945
bin: 9.75e1
variant carriers: 14665

GenotypeQuality
all individuals: 1890
bin: 6.75e1
variant carriers: 1667

GenotypeQuality
all individuals: 2155
bin: 4.75e1
variant carriers: 1743

GenotypeQuality
all individuals: 1411
bin: 9.25e1
variant carriers: 1352

GenotypeQuality
all individuals: 2329
bin: 3.75e1
variant carriers: 1658

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 1544

GenotypeQuality
all individuals: 1377
bin: 8.75e1
variant carriers: 1309

GenotypeQuality
all individuals: 2757
bin: 2.25e1
variant carriers: 1485

African
type: Population
allele count: 3299
allele frequency: 4.309038662486938e-1
allele num: 7656
num of homozygotes: 0

Latino
type: Population
allele count: 3669
allele frequency: 4.358517462580185e-1
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2056
allele frequency: 4.126856684062625e-1
allele num: 4982
num of homozygotes: 0

East Asian
type: Population
allele count: 2879
allele frequency: 4.395419847328244e-1
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21279
allele frequency: 4.308362016602551e-1
allele num: 49390
num of homozygotes: 0

Other
type: Population
allele count: 275
allele frequency: 4.230769230769231e-1
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 4731
allele frequency: 4.121798222686879e-1
allele num: 11478
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 2.189746e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-1

QD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

South Asian
type: Population
allele count: 149
allele frequency: 1.298135563687054e-2
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 69
allele frequency: 9.012539184952978e-3
allele num: 7656
num of homozygotes: 0

Latino
type: Population
allele count: 117
allele frequency: 1.389878831076265e-2
allele num: 8418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 2.189746e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8053
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.545454545454545e-3
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.924646781789639e-4
allele num: 2548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.074e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 3.60467e5

QD
type: SiteQuality
SIO_000300: 4.58e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.81057268722467e-5
allele num: 11350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.027e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.799e0

DP
type: SiteQuality
SIO_000300: 1.798019e6

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9022
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01461038961039e-4
allele num: 9856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.234e0

VQSLOD
type: SiteQuality
SIO_000300: -5.682e-1

FS
type: SiteQuality
SIO_000300: 1.232e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.79063e6

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.893e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 4400
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 380
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63568
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.342161775232641e-3
allele num: 11176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.712e0

DP
type: SiteQuality
SIO_000300: 1.627052e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
SIO_000300: 2.014e0

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
all individuals: 1502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.610824742268041e-5
allele num: 62080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.559e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 1.448945e6

QD
type: SiteQuality
SIO_000300: 1.291e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5455
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.09090909090909e-5
allele num: 11000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.223726627981947e-5
allele num: 62040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.393e1

VQSLOD
type: SiteQuality
SIO_000300: -4.709e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 2.193e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

DP
type: SiteQuality
SIO_000300: 1.445312e6

GenotypeQuality
all individuals: 825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5452
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.100837277029486e-5
allele num: 10988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

DP
type: SiteQuality
SIO_000300: 1.442319e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.488e1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5640
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 9.75e1
variant carriers: 88

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.626915693228777e-4
allele num: 61466
num of homozygotes: 0

South Asian
type: Population
allele count: 78
allele frequency: 5.403158769742311e-3
allele num: 14436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.06951871657754e-4
allele num: 9350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.763171098845961e-4
allele num: 7972
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.41319e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 646
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1685
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11381
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6819
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2798
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1543
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3909
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 953
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 61
allele frequency: 5.613841339959506e-3
allele num: 10866
num of homozygotes: 0

South Asian
type: Population
allele count: 45
allele frequency: 3.130217028380634e-3
allele num: 14376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 758
allele frequency: 1.240264415210419e-2
allele num: 61116
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.544163063619518e-3
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.116938950988822e-3
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.529724260055654e-4
allele num: 7906
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.728132387706856e-3
allele num: 846
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.504e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 1.395826e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6020
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6706
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.264406151565684e-5
allele num: 10794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.185344827586207e-3
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60940
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.356e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

QD
type: SiteQuality
SIO_000300: 1.344e1

FS
type: SiteQuality
SIO_000300: 3.077e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.374058e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4349
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
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variant carriers: 0

GenotypeQuality
all individuals: 6055
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.089561996077577e-4
allele num: 9178
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.363295880149813e-5
allele num: 10680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.283038234539389e-4
allele num: 7794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.583e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 3.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.311e0

DP
type: SiteQuality
SIO_000300: 1.356861e6

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5897
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.65892501658925e-5
allele num: 60280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.356311e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 1300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
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variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
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variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011531458628363e-4
allele num: 9886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: -2.154e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

FS
type: SiteQuality
SIO_000300: 1.084e0

DP
type: SiteQuality
SIO_000300: 1.542275e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.718e1

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.431e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.024e1

DP
type: SiteQuality
SIO_000300: 1.568354e6

MQ
type: SiteQuality
SIO_000300: 5.795e1

VQSLOD
type: SiteQuality
SIO_000300: -2.48e0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.355e-1

FS
type: SiteQuality
SIO_000300: 1.665e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.515e0

QD
type: SiteQuality
SIO_000300: 9.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQ
type: SiteQuality
SIO_000300: 5.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

DP
type: SiteQuality
SIO_000300: 1.577863e6

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45141
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.094216588457554e-5
allele num: 65636
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224289911851126e-4
allele num: 16336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.763e0

QD
type: SiteQuality
SIO_000300: 1.231e1

DP
type: SiteQuality
SIO_000300: 1.599204e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040807638508788e-5
allele num: 65772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.234e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
SIO_000300: 1.602763e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.25e1
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GenotypeQuality
all individuals: 667
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GenotypeQuality
all individuals: 1331
bin: 7.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6289
bin: 6.75e1
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GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

DP
type: SiteQuality
SIO_000300: 1.615401e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.006e0

FS
type: SiteQuality
SIO_000300: 1.412e0

QD
type: SiteQuality
SIO_000300: 9.74e0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6299
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.75e1
variant carriers: 379

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 3.328290468986384e-3
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.709916251972327e-4
allele num: 16478
num of homozygotes: 1

Latino
type: Population
allele count: 8
allele frequency: 6.928806513078123e-4
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 326
allele frequency: 4.901813370222235e-3
allele num: 66506
num of homozygotes: 1

African
type: Population
allele count: 8
allele frequency: 7.765482430596001e-4
allele num: 10302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.639166e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

QD
type: SiteQuality
SIO_000300: 1.441e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

GenotypeQuality
all individuals: 2630
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 1302
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variant carriers: 0

GenotypeQuality
all individuals: 47180
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GenotypeQuality
all individuals: 1318
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6364
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

DP
type: SiteQuality
SIO_000300: 1.622887e6

QD
type: SiteQuality
SIO_000300: 1.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 1.4837e1

VQSLOD
type: SiteQuality
SIO_000300: -2.368e0

MQRankSum
type: SiteQuality
SIO_000300: -1.607e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 2628
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variant carriers: 1

GenotypeQuality
all individuals: 6371
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 4.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

DP
type: SiteQuality
SIO_000300: 1.62533e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.547e0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 433
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GenotypeQuality
all individuals: 36
bin: 3.25e1
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GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 47276
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GenotypeQuality
all individuals: 2628
bin: 9.75e1
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GenotypeQuality
all individuals: 656
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GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

DP
type: SiteQuality
SIO_000300: 1.625096e6

FS
type: SiteQuality
SIO_000300: 1.386e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0