16-89973734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973734
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973734
    reference: chr 16
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+4C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+4C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+4C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+4C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1042C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+4C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16990
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1799+4C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-89973738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973738
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973738
    reference: chr 16
allele count: 2
allele frequency: 1.651936896010573e-5
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+8C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1046C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+8C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+8C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+8C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+8C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11060
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1799+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

16-89973739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973739
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973739
    reference: chr 16
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1047C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+9C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+9C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+9C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+9C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+9C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11058
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

16-89973741-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973741
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973741
    reference: chr 16
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+11C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+11C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1049C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+11C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+11C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+11C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16239
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4632
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6690
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-89973744-T-TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973744
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973800
    reference: chr 16
allele count: 1
allele frequency: 8.323206765102459e-6
allele num: 120146
alternate allele: TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

16-89973744-T-TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAACTCCCGGCTCCCACCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973744
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973807
    reference: chr 16
allele count: 1
allele frequency: 8.323206765102459e-6
allele num: 120146
alternate allele: TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAACTCCCGGCTCCCACCTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-89973744-T-TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973744
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973807
    reference: chr 16
allele count: 7
allele frequency: 5.826244735571721e-5
allele num: 120146
alternate allele: TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10831
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-89973744-T-TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAGCTCCTGGCTCCCACCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973744
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973807
    reference: chr 16
allele count: 2
allele frequency: 1.664641353020492e-5
allele num: 120146
alternate allele: TCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCTCCTCCCAGCTCCTGGCTCCCACCTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10831
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

16-89973744-T-TCCAGTTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973744
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973786
    reference: chr 16
allele count: 1
allele frequency: 8.323206765102459e-6
allele num: 120146
alternate allele: TCCAGTTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10831
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

16-89973746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973746
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973746
    reference: chr 16
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+16C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+16C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+16C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1054C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+16C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+16C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

16-89973749-TTCCCACCTCCCAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973735
    reference: chr 16
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10850
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: TTCCCACCTCCCAGC
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

16-89973754-A-ACCTCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973754
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973761
    reference: chr 16
allele count: 3
allele frequency: 2.502711270543088e-5
allele num: 119870
alternate allele: ACCTCCCT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+30_1383+31insTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+30_259+31insTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+30_1603+31insTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+30_1094+31insTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+30_1799+31insTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10572
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10549
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-89973761-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973761
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973761
    reference: chr 16
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+31A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+31A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1069A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+31A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+31A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+31A>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-89973762-G-GCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTCCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCACCTCCCAGTTCCCGCCTCCCAACTCTCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973867
    reference: chr 16
allele count: 1
allele frequency: 8.427865895797866e-6
allele num: 118654
alternate allele: GCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTCCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCACCTCCCAGTTCCCGCCTCCCAACTCTCAC
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

16-89973762-G-GCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTCCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCACCTCCCAGTTCCCGCCTCCCACCTCTCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973867
    reference: chr 16
allele count: 8
allele frequency: 6.742292716638293e-5
allele num: 118654
alternate allele: GCTCCCACCTCCCTCCTCCCAGCTCCCGGCTCCCACCTCCCAGTTCCCACCTCCCAGCTCCCACCTCCCTCCTCCCACCTCCCAGTTCCCGCCTCCCACCTCTCAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10298
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

16-89973763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973763
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973763
    reference: chr 16
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+33C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+33C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+33C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+33C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+33C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1071C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-89973768-A-ACCTCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973768
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973775
    reference: chr 16
allele count: 37
allele frequency: 3.551749956803041e-4
allele num: 104174
alternate allele: ACCTCCCT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+45_1603+51dupTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+45_1799+51dupTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+45_1383+51dupTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+45_259+51dupTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+45_1094+51dupTCCTCCC
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 14
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-89973768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973768
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973768
    reference: chr 16
allele count: 3
allele frequency: 2.879797262272736e-5
allele num: 104174
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1076A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+38A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+38A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+38A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+38A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+38A>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-89973769-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973769
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973769
    reference: chr 16
allele count: 3
allele frequency: 2.76502792678206e-5
allele num: 108498
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+39C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+39C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+39C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+39C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+39C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1077C>G
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6061
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-89973775-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973775
    reference: chr 16
allele count: 4
allele frequency: 3.907089413741233e-5
allele num: 102378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+45T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+45T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+45T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+45T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+45T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1083T>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

16-89973775-T-TCCTCCCAGCTCCCGGCTCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973796
    reference: chr 16
allele count: 2
allele frequency: 1.953544706870617e-5
allele num: 102378
alternate allele: TCCTCCCAGCTCCCGGCTCCCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-89973775-T-TCCTCCCTCCTCCCAGCTCCTGGCTCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973803
    reference: chr 16
allele count: 2
allele frequency: 1.953544706870617e-5
allele num: 102378
alternate allele: TCCTCCCTCCTCCCAGCTCCTGGCTCCCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-89973776-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973776
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973776
    reference: chr 16
allele count: 1
allele frequency: 1.00427822523952e-5
allele num: 99574
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1084C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+46C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+46C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+46C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+46C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+46C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3966
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-89973777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973777
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973777
    reference: chr 16
allele count: 1
allele frequency: 1.322786317098336e-5
allele num: 75598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+47C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+47C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+47C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+47C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1085C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+47C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27824
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-89973777-CTCCCAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973777
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973770
    reference: chr 16
allele count: 58876
allele frequency: 7.788036720548163e-1
allele num: 75598
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+54_1799+60delTTCCCAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+54_1603+60delTTCCCAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+54_259+60delTTCCCAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+54_1383+60delTTCCCAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+54_1094+60delTTCCCAG
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 748
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 1757
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.75e1
  variant carriers: 5604
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 5.25e1
  variant carriers: 2651
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.75e1
  variant carriers: 1794
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 4.75e1
  variant carriers: 4050
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 4.25e1
  variant carriers: 5210
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 9.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.75e1
  variant carriers: 3166
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 479
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 3.25e1
  variant carriers: 4694
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 1213
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.25e1
  variant carriers: 1723
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 6.25e1
  variant carriers: 1055
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.75e1
  variant carriers: 1421
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 582
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 620
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.25e1
  variant carriers: 695
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 470
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 1.75e1
  variant carriers: 399
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 2.5e0
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.75e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 476
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.25e1
  variant carriers: 610
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.25e1
  variant carriers: 334
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 558
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.25e1
  variant carriers: 511
num of homozygotes: 24201
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: CTCCCAGT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

16-89973780-CCAGTTCCCAGCTCCCAGCTCCCACCTCCCAGCTCCAACCTTCCAGCTCCCAGCTCCCACCTAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973780
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973717
    reference: chr 16
allele count: 3105
allele frequency: 3.112469927826784e-1
allele num: 9976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 383
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.75e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 464
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 1847
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 37
num of homozygotes: 1114
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: CCAGTTCCCAGCTCCCAGCTCCCACCTCCCAGCTCCAACCTTCCAGCTCCCAGCTCCCACCTAG
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-89973781-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973781
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973779
    reference: chr 16
allele count: 9748
allele frequency: 4.833878805910939e-1
allele num: 20166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+52_259+53delAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+52_1383+53delAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1090_128+1091delAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+52_1799+53delAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+52_1603+53delAG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+52_1094+53delAG
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 823
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.75e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 441
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 904
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 928
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 964
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 6.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 9.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.5e0
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 7730
  bin: 9.75e1
  variant carriers: 7384
num of homozygotes: 1671
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CAG
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

16-89973781-CAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973781
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973778
    reference: chr 16
allele count: 399
allele frequency: 1.978577804224933e-2
allele num: 20166
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+52_1799+54delAGT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+52_1094+54delAGT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1090_128+1092delAGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+52_1603+54delAGT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+52_1383+54delAGT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+52_259+54delAGT
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 8
num of homozygotes: 27
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CAGT
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

16-89973782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973782
    reference: chr 16
allele count: 6
allele frequency: 1.54639175257732e-2
allele num: 388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+52A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+52A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1090A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+52A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+52A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+52A>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

16-89973782-AGTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89973782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89973779
    reference: chr 16
allele count: 20
allele frequency: 5.154639175257732e-2
allele num: 388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+53_1799+55delGTT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.259+53_259+55delGTT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+53_1603+55delGTT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1383+53_1383+55delGTT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.128+1091_128+1093delGTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1094+53_1094+55delGTT
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: AGTT
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-89975359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975359
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975359
    reference: chr 16
allele count: 1
allele frequency: 7.649938800489595e-5
allele num: 13072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1095-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.260-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1603+1629T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1384-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1799+1629T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1640T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

16-89975392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975392
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975392
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 13960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.19G>A
  hgvsp: ENST00000566283.1:c.19G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1607G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1113G>A
  hgvsp: ENST00000263347.7:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1607G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.278G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1402G>A
  hgvsp: ENST00000562256.1:c.1402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1607G>A
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg7Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

16-89975399-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975399
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975399
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 14052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.26G>T
  hgvsp: ENSP00000455471.1:p.Val10Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.285G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1409G>T
  hgvsp: ENSP00000455611.1:p.Val471Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1600G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1120G>T
  hgvsp: ENSP00000263347.7:p.Val374Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1600G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1600G>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val10Phe
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-89975423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975423
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975423
    reference: chr 16
allele count: 2
allele frequency: 1.407261469180974e-4
allele num: 14212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.50G>A
  hgvsp: ENSP00000455471.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1144G>A
  hgvsp: ENSP00000263347.7:p.Val382Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.309G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1576G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1433G>A
  hgvsp: ENSP00000455611.1:p.Val479Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1576G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1576G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val18Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

16-89975436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975436
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975436
    reference: chr 16
allele count: 21
allele frequency: 1.475133464456308e-3
allele num: 14236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1563G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1446G>A
  hgvsp: ENSP00000455611.1:p.Arg483His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1563G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1157G>A
  hgvsp: ENSP00000263347.7:p.Arg386His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1563G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.63G>A
  hgvsp: ENSP00000455471.1:p.Arg22His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.322G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Arg22His
num of homozygotes: 2
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

16-89975448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975448
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975448
    reference: chr 16
allele count: 105
allele frequency: 7.372560033703132e-3
allele num: 14242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.75C>T
  hgvsp: ENSP00000455471.1:p.Ser26Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1551C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.334C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1458C>T
  hgvsp: ENSP00000455611.1:p.Ser487Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1551C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1169C>T
  hgvsp: ENSP00000263347.7:p.Ser390Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1551C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser26Phe
num of homozygotes: 2
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-89975454-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975454
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975454
    reference: chr 16
allele count: 2
allele frequency: 1.404297149276787e-4
allele num: 14242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.81C>T
  hgvsp: ENSP00000455471.1:p.Pro28Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1464C>T
  hgvsp: ENSP00000455611.1:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1545C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.340C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1175C>T
  hgvsp: ENSP00000263347.7:p.Pro392Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1545C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1545C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro28Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

16-89975466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975466
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975466
    reference: chr 16
allele count: 1000
allele frequency: 7.021485746383935e-2
allele num: 14242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.352C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1476C>T
  hgvsp: ENSP00000455611.1:p.Ala493Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1187C>T
  hgvsp: ENSP00000263347.7:p.Ala396Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1533C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1533C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1533C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.93C>T
  hgvsp: ENSP00000455471.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 954
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Ala32Val
num of homozygotes: 43
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

16-89975467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975467
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975467
    reference: chr 16
allele count: 1
allele frequency: 7.024445068839562e-5
allele num: 14236
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1532G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1532G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1477G>A
  hgvsp: ENST00000562256.1:c.1477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.94G>A
  hgvsp: ENST00000566283.1:c.94G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.353G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1532G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1188G>A
  hgvsp: ENST00000263347.7:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala32Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-89975473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975473
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975473
    reference: chr 16
allele count: 129
allele frequency: 9.060261272650654e-3
allele num: 14238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1483G>A
  hgvsp: ENST00000562256.1:c.1483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1194G>A
  hgvsp: ENST00000263347.7:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1526G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.359G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1526G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1526G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.100G>A
  hgvsp: ENST00000566283.1:c.100G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 9.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 3
hgvs: p.Ala34Ala
num of homozygotes: 5
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

16-89975480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975480
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975480
    reference: chr 16
allele count: 3
allele frequency: 2.107037505267594e-4
allele num: 14238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1519C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1490C>T
  hgvsp: ENSP00000455611.1:p.Pro498Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1519C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1201C>T
  hgvsp: ENSP00000263347.7:p.Pro401Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1519C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.107C>T
  hgvsp: ENSP00000455471.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.366C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro37Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-89975493-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975493
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975493
    reference: chr 16
allele count: 21
allele frequency: 1.533518329195268e-3
allele num: 13694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+2T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.120T>G
  hgvsp: ENSP00000455471.1:p.Val41Gly
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+2T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1506T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1506T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1506T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.379T>G
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.75e1
  variant carriers: 2
hgvs: c.1501+2T>G
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-89975495-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975495
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975495
    reference: chr 16
allele count: 10
allele frequency: 7.060152499293985e-4
allele num: 14164
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1504C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+4C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.122C>G
  hgvsp: ENSP00000455471.1:p.Arg42Gly
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.381C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1504C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1504C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+4C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg42Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

16-89975495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975495
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975495
    reference: chr 16
allele count: 2
allele frequency: 1.412030499858797e-4
allele num: 14164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.122C>T
  hgvsp: ENSP00000455471.1:p.Arg42Ter
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1504C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1504C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+4C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1504C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.381C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+4C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg42Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

16-89975496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975496
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975496
    reference: chr 16
allele count: 1413
allele frequency: 9.940903334740397e-2
allele num: 14214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1503G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+5G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1503G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.123G>A
  hgvsp: ENSP00000455471.1:p.Arg42Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+5G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.382G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1503G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Arg42Gln
num of homozygotes: 90
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-89975500-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975500
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975498
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 14218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+13_1212+14delCA
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1495_1800-1494delCA
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+13_1501+14delCA
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.131_132delCA
  hgvsp: ENSP00000455471.1:p.Gln45ValfsTer5
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.390_391delCA
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1495_129-1494delCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1495_1604-1494delCA
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln45ValfsTer5
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: GAC
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

16-89975508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975508
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975508
    reference: chr 16
allele count: 1
allele frequency: 7.034327518289252e-5
allele num: 14216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1491G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1491G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+17G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1491G>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.135G>A
  hgvsp: ENSP00000455471.1:p.Trp46Ter
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.394G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+17G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp46Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

16-89975522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975522
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975522
    reference: chr 16
allele count: 20
allele frequency: 1.409840688002256e-3
allele num: 14186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+31A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1477A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.142+7A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.408A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1477A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+31A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1477A>G
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
hgvs: c.142+7A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-89975527-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975527
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975527
    reference: chr 16
allele count: 3
allele frequency: 2.11864406779661e-4
allele num: 14160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1472A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1472A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1472A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+36A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+36A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.142+12A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.413A>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-89975555-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89975555
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89975555
    reference: chr 16
allele count: 1406
allele frequency: 1.0e-1
allele num: 14060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.142+40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-1444G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-1444G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563484
  gene symbol: TCF25
  hgvsc: ENST00000563484.1:n.441G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1212+64G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-1444G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1501+64G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 9.75e1
  variant carriers: 1249
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 87
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

16-89976951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976951
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976951
    reference: chr 16
allele count: 17
allele frequency: 1.423046659188696e-4
allele num: 119462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1116C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-48C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-48C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-48C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-89976956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976956
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976956
    reference: chr 16
allele count: 1
allele frequency: 8.358408559010364e-6
allele num: 119640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-43C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1121C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-43C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-43C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

16-89976959-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976960
    reference: chr 16
allele count: 2
allele frequency: 1.671095068598453e-5
allele num: 119682
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1125dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-39dupG
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-39dupG
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6797
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-89976960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976960
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976960
    reference: chr 16
allele count: 151
allele frequency: 1.261613528507453e-3
allele num: 119688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1125G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-39G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-39G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-39G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

16-89976968-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976968
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976968
    reference: chr 16
allele count: 1
allele frequency: 8.345852111500584e-6
allele num: 119820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1133T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-31T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-31T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-31T>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

16-89976969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976969
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976969
    reference: chr 16
allele count: 2
allele frequency: 1.669170422300117e-5
allele num: 119820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-30C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1134C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-30C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-30C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17394
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-89976974-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976974
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976975
    reference: chr 16
allele count: 23
allele frequency: 1.91816923256551e-4
allele num: 119906
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1140dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-24dupT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-24dupT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-24dupT
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5493
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17413
  bin: 9.75e1
  variant carriers: 23
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

16-89976981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976981
    reference: chr 16
allele count: 1
allele frequency: 8.332361224523806e-6
allele num: 120014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1146T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-18T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-18T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-18T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-89976982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976982
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976982
    reference: chr 16
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1147T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-17T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-17T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-17T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

16-89976983-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976983
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976983
    reference: chr 16
allele count: 1
allele frequency: 8.33152816889674e-6
allele num: 120026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1148C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-16C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-16C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-16C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7027
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-89976984-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976984
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976984
    reference: chr 16
allele count: 38
allele frequency: 3.1658751978672e-4
allele num: 120030
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1149T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-15T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-15T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-15T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-89976990-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976990
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976990
    reference: chr 16
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1155T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-9T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-9T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

16-89976992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976992
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976992
    reference: chr 16
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1157C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-7C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-7C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-7C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1800-7C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-89976994-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976994
    reference: chr 16
allele count: 1
allele frequency: 8.327504080476999e-6
allele num: 120084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-5T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1159T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-5T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-5T>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1800-5T>G
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-89976995-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976995
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89976995
    reference: chr 16
allele count: 1
allele frequency: 8.327226700419692e-6
allele num: 120088
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.129-4T>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1502-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1800-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1213-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.65-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1604-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1160T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.87-4T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.143-4T>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1800-4T>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-89977006-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977006
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977006
    reference: chr 16
allele count: 4
allele frequency: 3.329227286346839e-5
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1807C>G
  hgvsp: ENSP00000263346.8:p.Pro603Ala
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.150C>G
  hgvsp: ENSP00000455471.1:p.Ser51Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1171C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1611C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1220C>G
  hgvsp: ENSP00000263347.7:p.Ser407Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.94C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1509C>G
  hgvsp: ENSP00000455611.1:p.Ser504Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.136C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.72C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17405
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro603Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-89977014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977014
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977014
    reference: chr 16
allele count: 2
allele frequency: 1.664115023630433e-5
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.158C>T
  hgvsp: ENSP00000455471.1:p.Pro54Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1619C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.144C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1815C>T
  hgvsp: ENST00000263346.8:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1517C>T
  hgvsp: ENSP00000455611.1:p.Pro507Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1228C>T
  hgvsp: ENSP00000263347.7:p.Pro410Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.80C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.102C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1179C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17406
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro54Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

16-89977018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977018
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977018
    reference: chr 16
allele count: 8
allele frequency: 6.656681644200366e-5
allele num: 120180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1521G>A
  hgvsp: ENSP00000455611.1:p.Trp508Ter
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1232G>A
  hgvsp: ENSP00000263347.7:p.Trp411Ter
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.148G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.84G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1183G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1623G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.162G>A
  hgvsp: ENSP00000455471.1:p.Trp55Ter
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.106G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1819G>A
  hgvsp: ENSP00000263346.8:p.Gly607Arg
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp55Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

16-89977031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977031
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977031
    reference: chr 16
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1636C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1534C>T
  hgvsp: ENST00000562256.1:c.1534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1832C>T
  hgvsp: ENSP00000263346.8:p.Ala611Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.119C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1245C>T
  hgvsp: ENST00000263347.7:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1196C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.175C>T
  hgvsp: ENST00000566283.1:c.175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.161C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.97C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5512
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala611Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-89977032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977032
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977032
    reference: chr 16
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1535T>C
  hgvsp: ENSP00000455611.1:p.Ser513Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1833T>C
  hgvsp: ENST00000263346.8:c.1833T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1246T>C
  hgvsp: ENSP00000263347.7:p.Ser416Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1197T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.162T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.176T>C
  hgvsp: ENSP00000455471.1:p.Ser60Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1637T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.120T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.98T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser60Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-89977035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977035
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977035
    reference: chr 16
allele count: 3
allele frequency: 2.496214075319099e-5
allele num: 120182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.123C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.179C>T
  hgvsp: ENSP00000455471.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1200C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1249C>T
  hgvsp: ENSP00000263347.7:p.Leu417Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1538C>T
  hgvsp: ENSP00000455611.1:p.Leu514Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.101C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1640C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.165C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1836C>T
  hgvsp: ENST00000263346.8:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu61Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

16-89977038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89977038
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89977038
    reference: chr 16
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000570116
  gene symbol: TCF25
  hgvsc: ENST00000570116.2:n.1643C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000567171
  gene symbol: TCF25
  hgvsc: ENST00000567171.1:n.1203C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000564957
  gene symbol: TCF25
  hgvsc: ENST00000564957.1:n.126C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263347
  ensembl transcript: ENST00000263347
  gene symbol: TCF25
  hgvsc: ENST00000263347.7:c.1252C>T
  hgvsp: ENSP00000263347.7:p.Leu418Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455611
  ensembl transcript: ENST00000562256
  gene symbol: TCF25
  hgvsc: ENST00000562256.1:c.1541C>T
  hgvsp: ENSP00000455611.1:p.Leu515Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000455471
  ensembl transcript: ENST00000566283
  gene symbol: TCF25
  hgvsc: ENST00000566283.1:c.182C>T
  hgvsp: ENSP00000455471.1:p.Leu62Phe
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000565860
  gene symbol: TCF25
  hgvsc: ENST00000565860.1:n.104C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.1839C>T
  hgvsp: ENST00000263346.8:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000267048
  ensembl transcript: ENST00000570217
  gene symbol: RP11-566K11.7
  hgvsc: ENST00000570217.1:n.168C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu62Phe
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11062
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.293e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

MQRankSum
type: SiteQuality
SIO_000300: -1.286e0

FS
type: SiteQuality
SIO_000300: 2.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
type: SiteQuality
SIO_000300: 3.85156e6

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.659e1

FS
type: SiteQuality
SIO_000300: 2.685e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.511e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 3.848556e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.819e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 2.343e1

VQSLOD
type: SiteQuality
SIO_000300: -1.657e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4635
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 2.617e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.285e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.804e1

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 3.847731e6

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

DP
type: SiteQuality
SIO_000300: 3.845799e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.318e0

FS
type: SiteQuality
SIO_000300: 1.556e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.165e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.391e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.774e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 3.847037e6

FS
type: SiteQuality
SIO_000300: 3.8893e1

MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
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FS
type: SiteQuality
SIO_000300: 3.8893e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQ
type: SiteQuality
SIO_000300: 5.109e1

DP
type: SiteQuality
SIO_000300: 3.847037e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.821851348728896e-4
allele num: 10306
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

FS
type: SiteQuality
SIO_000300: 3.8893e1

DP
type: SiteQuality
SIO_000300: 3.847037e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 3.847037e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQ
type: SiteQuality
SIO_000300: 5.109e1

FS
type: SiteQuality
SIO_000300: 3.8893e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

FS
type: SiteQuality
SIO_000300: 3.8893e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 3.847037e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66250
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East Asian
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Latino
type: Population
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

African
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BaseQRankSum
type: SiteQuality
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MQ
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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Other
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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MQRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8574
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 65454
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Latino
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African
type: Population
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allele frequency: 9.801999607920016e-5
allele num: 10202
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.617e0

MQ
type: SiteQuality
SIO_000300: 5.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 6.4e0

QD
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e0

VQSLOD
type: SiteQuality
SIO_000300: -3.398e0

DP
type: SiteQuality
SIO_000300: 3.793241e6

GenotypeQuality
all individuals: 10449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518971959777622e-5
allele num: 65834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.281e1

MQRankSum
type: SiteQuality
SIO_000300: -1.349e0

DP
type: SiteQuality
SIO_000300: 3.777691e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.214e0

GenotypeQuality
all individuals: 4042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 769
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 2
allele frequency: 1.890359168241966e-4
allele num: 10580
num of homozygotes: 1

African
type: Population
allele count: 14
allele frequency: 1.77260065839453e-3
allele num: 7898
num of homozygotes: 6

East Asian
type: Population
allele count: 2
allele frequency: 2.624671916010499e-4
allele num: 7620
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.539882968894364e-4
allele num: 58446
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.409478349812479e-4
allele num: 5866
num of homozygotes: 1

South Asian
type: Population
allele count: 8
allele frequency: 6.158583525789069e-4
allele num: 12990
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.707878e6

MQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQ
type: SiteQuality
SIO_000300: 5.185e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 2.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

GenotypeQuality
all individuals: 2195
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 769
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.309468822170901e-4
allele num: 12990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

DP
type: SiteQuality
SIO_000300: 3.707878e6

QD
type: SiteQuality
SIO_000300: 1.015e1

FS
type: SiteQuality
SIO_000300: 2.567e0

MQ
type: SiteQuality
SIO_000300: 5.185e1

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 2327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.325581395348837e-4
allele num: 12900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10992
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 2.344e1

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.632e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.776e1

DP
type: SiteQuality
SIO_000300: 3.60693e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.725863794829312e-5
allele num: 57942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.87686996547756e-4
allele num: 10428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

DP
type: SiteQuality
SIO_000300: 3.420986e6

MQ
type: SiteQuality
SIO_000300: 3.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.451727589658624e-5
allele num: 57942
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

DP
type: SiteQuality
SIO_000300: 3.420986e6

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
all individuals: 2022
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.50501002004008e-4
allele num: 7984
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

MQ
type: SiteQuality
SIO_000300: 3.983e1

DP
type: SiteQuality
SIO_000300: 3.420986e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

GenotypeQuality
all individuals: 1825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8136
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754940156540662e-5
allele num: 56982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.836e1

VQSLOD
type: SiteQuality
SIO_000300: -4.154e0

MQRankSum
type: SiteQuality
SIO_000300: -4.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 3.375776e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

QD
type: SiteQuality
SIO_000300: 1.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.301813829297487e-5
allele num: 43444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.419e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.053e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.536977e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

GenotypeQuality
all individuals: 1054
bin: 3.25e1
variant carriers: 605

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 515

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 487

GenotypeQuality
all individuals: 618
bin: 6.25e1
variant carriers: 431

GenotypeQuality
all individuals: 27824
bin: 9.75e1
variant carriers: 27748

GenotypeQuality
all individuals: 615
bin: 8.75e1
variant carriers: 600

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 429

East Asian
type: Population
allele count: 3807
allele frequency: 7.092026825633383e-1
allele num: 5368
num of homozygotes: 1385

Latino
type: Population
allele count: 6969
allele frequency: 8.706896551724138e-1
allele num: 8004
num of homozygotes: 3108

South Asian
type: Population
allele count: 6247
allele frequency: 7.596060311284046e-1
allele num: 8224
num of homozygotes: 2513

European (Non-Finnish)
type: Population
allele count: 35216
allele frequency: 8.106067581254028e-1
allele num: 43444
num of homozygotes: 14538

European (Finnish)
type: Population
allele count: 4071
allele frequency: 8.506059339740911e-1
allele num: 4786
num of homozygotes: 1732

African
type: Population
allele count: 2115
allele frequency: 4.059500959692898e-1
allele num: 5210
num of homozygotes: 740

Other
type: Population
allele count: 451
allele frequency: 8.02491103202847e-1
allele num: 562
num of homozygotes: 185

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

MQ
type: SiteQuality
SIO_000300: 5.419e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 2.536977e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.053e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 165
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 89
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 19

GenotypeQuality
all individuals: 59
bin: 7.25e1
variant carriers: 24

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 31

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 24

European (Finnish)
type: Population
allele count: 161
allele frequency: 5.127388535031847e-1
allele num: 314
num of homozygotes: 57

European (Non-Finnish)
type: Population
allele count: 1980
allele frequency: 4.441453566621804e-1
allele num: 4458
num of homozygotes: 754

East Asian
type: Population
allele count: 176
allele frequency: 2.424242424242424e-1
allele num: 726
num of homozygotes: 52

Latino
type: Population
allele count: 325
allele frequency: 5.062305295950156e-1
allele num: 642
num of homozygotes: 134

South Asian
type: Population
allele count: 275
allele frequency: 2.395470383275261e-1
allele num: 1148
num of homozygotes: 70

African
type: Population
allele count: 159
allele frequency: 6.054836252856055e-2
allele num: 2626
num of homozygotes: 35

Other
type: Population
allele count: 29
allele frequency: 4.677419354838709e-1
allele num: 62
num of homozygotes: 12

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.087151e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.398e-1

FS
type: SiteQuality
SIO_000300: 3.707e0

QD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.185e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.734e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 59

GenotypeQuality
all individuals: 338
bin: 1.25e1
variant carriers: 88

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 65

GenotypeQuality
all individuals: 352
bin: 3.25e1
variant carriers: 92

GenotypeQuality
all individuals: 85
bin: 8.25e1
variant carriers: 47

GenotypeQuality
all individuals: 481
bin: 1.75e1
variant carriers: 98

GenotypeQuality
all individuals: 147
bin: 6.75e1
variant carriers: 64

African
type: Population
allele count: 2291
allele frequency: 5.293438077634011e-1
allele num: 4328
num of homozygotes: 797

South Asian
type: Population
allele count: 1132
allele frequency: 4.800678541136557e-1
allele num: 2358
num of homozygotes: 204

East Asian
type: Population
allele count: 1411
allele frequency: 5.581487341772152e-1
allele num: 2528
num of homozygotes: 260

Latino
type: Population
allele count: 448
allele frequency: 4.258555133079848e-1
allele num: 1052
num of homozygotes: 27

European (Finnish)
type: Population
allele count: 343
allele frequency: 4.685792349726776e-1
allele num: 732
num of homozygotes: 25

Other
type: Population
allele count: 59
allele frequency: 4.758064516129032e-1
allele num: 124
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 4064
allele frequency: 4.493586908447589e-1
allele num: 9044
num of homozygotes: 351

QD
type: SiteQuality
SIO_000300: 2.671e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.109e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

MQ
type: SiteQuality
SIO_000300: 4.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.230954e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -3.269e0

GenotypeQuality
all individuals: 150
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 87
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 7730
bin: 9.75e1
variant carriers: 308

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 6

East Asian
type: Population
allele count: 33
allele frequency: 1.305379746835443e-2
allele num: 2528
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.502732240437158e-2
allele num: 732
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 2.148798521256932e-2
allele num: 4328
num of homozygotes: 12

Latino
type: Population
allele count: 19
allele frequency: 1.806083650190114e-2
allele num: 1052
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.419354838709677e-2
allele num: 124
num of homozygotes: 1

South Asian
type: Population
allele count: 55
allele frequency: 2.332485156912638e-2
allele num: 2358
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 185
allele frequency: 2.045555064130915e-2
allele num: 9044
num of homozygotes: 8

MQRankSum
type: SiteQuality
SIO_000300: -3.269e0

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.109e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

QD
type: SiteQuality
SIO_000300: 2.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.230954e6

MQ
type: SiteQuality
SIO_000300: 4.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
all individuals: 240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0e-1
allele num: 10
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.923076923076923e-1
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.54264e5

MQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.901e-1

MQ
type: SiteQuality
SIO_000300: 5.197e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.666666666666667e-1
allele num: 12
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 8.333333333333333e-2
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.411764705882353e-2
allele num: 272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.0e-1
allele num: 10
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.901e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQ
type: SiteQuality
SIO_000300: 5.197e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

DP
type: SiteQuality
SIO_000300: 8.54264e5

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.705627705627706e-4
allele num: 3696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
SIO_000300: 6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.242e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.97177e5

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.06018e5

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: -2.979e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.06446e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.272e0

FS
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 2.06688e5

VQSLOD
type: SiteQuality
SIO_000300: -1.457e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.44e-2

QD
type: SiteQuality
SIO_000300: 1.328e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 298
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.297229219143577e-4
allele num: 1588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.837270341207349e-3
allele num: 7620
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.54320987654321e-3
allele num: 3888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
type: SiteQuality
SIO_000300: 2.07306e5

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 572
bin: 9.75e1
variant carriers: 103

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 291
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.25e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 3.674540682414698e-3
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.08695652173913e-2
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 1.442910915934755e-2
allele num: 1594
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 1.76056338028169e-3
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 1.286008230452675e-2
allele num: 3888
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 2.11351e5

QD
type: SiteQuality
SIO_000300: 1.098e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.52112676056338e-3
allele num: 568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.06912e5

VQSLOD
type: SiteQuality
SIO_000300: -1.254e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 1.0552e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.164e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 928
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 356
bin: 7.75e1
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GenotypeQuality
all individuals: 103
bin: 9.25e1
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GenotypeQuality
all individuals: 3823
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 4

Latino
type: Population
allele count: 10
allele frequency: 5.319148936170213e-2
allele num: 188
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 123
allele frequency: 3.166838311019567e-2
allele num: 3884
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 2.717391304347826e-2
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 1.06516290726817e-2
allele num: 1596
num of homozygotes: 0

African
type: Population
allele count: 87
allele frequency: 1.526315789473684e-1
allele num: 570
num of homozygotes: 3

South Asian
type: Population
allele count: 758
allele frequency: 9.947506561679791e-2
allele num: 7620
num of homozygotes: 38

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 1.858e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

QD
type: SiteQuality
SIO_000300: 1.162e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

DP
type: SiteQuality
SIO_000300: 2.77588e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 7.5e0
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GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
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GenotypeQuality
all individuals: 521
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.868e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.063e0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

DP
type: SiteQuality
SIO_000300: 2.11308e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

FS
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 4307
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 1.630434782608696e-2
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 5.92173017507724e-3
allele num: 3884
num of homozygotes: 2

South Asian
type: Population
allele count: 39
allele frequency: 5.118110236220472e-3
allele num: 7620
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 61
allele frequency: 3.822055137844611e-2
allele num: 1596
num of homozygotes: 2

Latino
type: Population
allele count: 3
allele frequency: 1.595744680851064e-2
allele num: 188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 1.303e1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 2.16465e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 2426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 298
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.76678445229682e-3
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.575991756826378e-4
allele num: 3882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

FS
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.069e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 2.11988e5

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 371
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 4062
bin: 6.25e1
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GenotypeQuality
all individuals: 981
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 4

GenotypeQuality
all individuals: 25
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variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 1.690391459074733e-2
allele num: 1124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.19047619047619e-2
allele num: 168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 2.87035e2

MQ
type: SiteQuality
SIO_000300: 5.857e1

VQSLOD
type: SiteQuality
SIO_000300: -3.769e2

DP
type: SiteQuality
SIO_000300: 2.20239e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.373e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.917e0

QD
type: SiteQuality
SIO_000300: 4.3e-1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.75e1
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GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 49
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variant carriers: 2

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 576
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variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 6.75e1
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GenotypeQuality
all individuals: 130
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.111111111111111e-2
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 5.188067444876783e-3
allele num: 1542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.78e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.037e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 1.34334e2

QD
type: SiteQuality
SIO_000300: 2.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.93e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.725e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.14576e5

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.75e1
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GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.624671916010499e-4
allele num: 7620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.8e0

DP
type: SiteQuality
SIO_000300: 2.14576e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

MQ
type: SiteQuality
SIO_000300: 5.78e1

VQSLOD
type: SiteQuality
SIO_000300: -8.725e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.037e0

FS
type: SiteQuality
SIO_000300: 1.34334e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.93e-2

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 8.75e1
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GenotypeQuality
all individuals: 156
bin: 8.25e1
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GenotypeQuality
all individuals: 1526
bin: 9.75e1
variant carriers: 1319

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 897
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variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 11
allele frequency: 5.851063829787234e-2
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 1.08695652173913e-1
allele num: 184
num of homozygotes: 1

African
type: Population
allele count: 122
allele frequency: 2.186379928315412e-1
allele num: 558
num of homozygotes: 13

South Asian
type: Population
allele count: 788
allele frequency: 1.034392228931478e-1
allele num: 7618
num of homozygotes: 49

East Asian
type: Population
allele count: 59
allele frequency: 2.920792079207921e-1
allele num: 202
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 125
allele frequency: 7.85175879396985e-2
allele num: 1592
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 288
allele frequency: 7.43801652892562e-2
allele num: 3872
num of homozygotes: 10

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.521e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

FS
type: SiteQuality
SIO_000300: 3.561e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 2.71477e5

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

DP
type: SiteQuality
SIO_000300: 2.09245e5

MQ
type: SiteQuality
SIO_000300: 5.177e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.179e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

GenotypeQuality
all individuals: 429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.583979328165374e-4
allele num: 3870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

DP
type: SiteQuality
SIO_000300: 2.08914e5

QD
type: SiteQuality
SIO_000300: 1.56e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 1672
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
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GenotypeQuality
all individuals: 341
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 419
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.628120893561104e-3
allele num: 7610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.0731e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.165e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.5e-2
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.694e0

DP
type: SiteQuality
SIO_000300: 2.05065e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 271
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 667
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 441
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 11

African
type: Population
allele count: 119
allele frequency: 2.140287769784173e-1
allele num: 556
num of homozygotes: 11

South Asian
type: Population
allele count: 788
allele frequency: 1.042603863455941e-1
allele num: 7558
num of homozygotes: 49

European (Finnish)
type: Population
allele count: 124
allele frequency: 7.838179519595449e-2
allele num: 1582
num of homozygotes: 7

Latino
type: Population
allele count: 11
allele frequency: 5.913978494623656e-2
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 286
allele frequency: 7.538218239325251e-2
allele num: 3794
num of homozygotes: 10

East Asian
type: Population
allele count: 58
allele frequency: 2.9e-1
allele num: 200
num of homozygotes: 9

Other
type: Population
allele count: 20
allele frequency: 1.08695652173913e-1
allele num: 184
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 1.745e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 1.85969e5

GenotypeQuality
all individuals: 1244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17376
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
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variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 3922
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variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530221882172915e-5
allele num: 65350
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.859168022310016e-3
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 4.016e0

QD
type: SiteQuality
SIO_000300: 1.407e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.205296e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.182e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4908
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 5358
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variant carriers: 0

GenotypeQuality
all individuals: 706
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variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 3951
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variant carriers: 0

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 11878
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variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

DP
type: SiteQuality
SIO_000300: 2.216783e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 3.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.947e0

GenotypeQuality
all individuals: 4937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 3953
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variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5392
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variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 2637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17394
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055954527396632e-5
allele num: 65446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.165e0

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

DP
type: SiteQuality
SIO_000300: 2.22343e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 4919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3624
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17471
bin: 9.75e1
variant carriers: 148

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 6770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.056421541659025e-5
allele num: 65436
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.608695652173913e-4
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 146
allele frequency: 1.43025078369906e-2
allele num: 10208
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

FS
type: SiteQuality
SIO_000300: 1.594e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.439e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.227083e6

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
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GenotypeQuality
all individuals: 17394
bin: 9.75e1
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GenotypeQuality
all individuals: 13920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
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GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 4975
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variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526484506182262e-5
allele num: 65510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

VQSLOD
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SIO_000300: 2.22e0

ClippingRankSum
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SIO_000300: -7.84e-1

BaseQRankSum
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SIO_000300: -6.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.057e0

ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 2.237769e6

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.052875809012089e-5
allele num: 65512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 7.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
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ReadPosRankSum
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SIO_000300: 1.03e0

VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65558
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
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South Asian
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allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
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allele count: 21
allele frequency: 2.054392486793191e-3
allele num: 10222
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 6.57e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.015e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 2.984e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.246761e6

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
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BaseQRankSum
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SIO_000300: 4.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 2.246959e6

FS
type: SiteQuality
SIO_000300: 1.354e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.421e0

VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 38

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

European (Finnish)
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allele count: 0
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allele num: 6612
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Latino
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allele frequency: 1.734304543877905e-4
allele num: 11532
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South Asian
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East Asian
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Other
type: Population
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African
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allele frequency: 3.51219512195122e-3
allele num: 10250
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QD
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MQRankSum
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele num: 65630
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Latino
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European (Finnish)
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South Asian
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Other
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QD
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MQRankSum
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DP
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
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allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
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SIO_000300: 2.248936e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
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SIO_000300: 3.0e-4

ClippingRankSum
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SIO_000300: 1.46e0

QD
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SIO_000300: 1.322e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

QD
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MQ
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MQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

BaseQRankSum
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SIO_000300: -1.585e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.248947e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.089948539934837e-5
allele num: 65682
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.011e0

BaseQRankSum
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SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.250076e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043954705953975e-5
allele num: 65704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 3.298e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 2.250524e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

QD
type: SiteQuality
SIO_000300: 1.514e1

VQSLOD
type: SiteQuality
SIO_000300: -2.565e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 8
allele frequency: 6.926406926406926e-4
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

VQSLOD
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SIO_000300: 1.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

African
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East Asian
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QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele num: 11550
num of homozygotes: 0

Other
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.0441400304414e-5
allele num: 65700
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South Asian
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BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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