12-71078087-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078087
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078087
    reference: chr 12
allele count: 1
allele frequency: 8.418500496691529e-6
allele num: 118786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.157-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.625-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1360-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.742-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.625-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.908-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1024-43A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.194-43A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-71078089-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078089
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078089
    reference: chr 12
allele count: 1
allele frequency: 8.438533720380746e-6
allele num: 118504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1024-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.625-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.157-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.625-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.908-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1360-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.194-45G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.742-45G>T
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

12-71078089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078089
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078089
    reference: chr 12
allele count: 3
allele frequency: 2.531560116114224e-5
allele num: 118504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.194-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.625-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.908-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.742-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1360-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1024-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.625-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.157-45G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14625
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-71078092-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078092
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078092
    reference: chr 12
allele count: 2
allele frequency: 1.686226898691488e-5
allele num: 118608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.194-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.625-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.625-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1024-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.908-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.157-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1360-48A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.742-48A>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14211
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7720
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/12-71078094-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078094
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078093
    reference: chr 12
allele count: 1
allele frequency: 8.465823470648991e-6
allele num: 118122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.157-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.742-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.194-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.908-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1024-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1360-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.625-51delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.625-51delT
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3645
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

12-71078437-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078437
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078437
    reference: chr 12
allele count: 1
allele frequency: 8.528930131004366e-6
allele num: 117248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+47A>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+47A>T
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20998
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-71078439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078439
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078439
    reference: chr 12
allele count: 1
allele frequency: 8.541898009737763e-6
allele num: 117070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+45G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

12-71078443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078443
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078443
    reference: chr 12
allele count: 1
allele frequency: 8.518758305789349e-6
allele num: 117388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+41T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+41T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11469
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

12-71078444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078444
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078444
    reference: chr 12
allele count: 1
allele frequency: 8.520790729379687e-6
allele num: 117360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+40A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+40A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7815
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-71078448-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078448
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078448
    reference: chr 12
allele count: 11
allele frequency: 9.357401704748455e-5
allele num: 117554
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+36T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+36T>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16448
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/12-71078453-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078453
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078453
    reference: chr 12
allele count: 1
allele frequency: 8.488099684242691e-6
allele num: 117812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+31T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+31T>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7809
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-71078461-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078461
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078460
    reference: chr 12
allele count: 2
allele frequency: 1.690502755519491e-5
allele num: 118308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+22delT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+22delT
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

12-71078466-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078466
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078466
    reference: chr 12
allele count: 1
allele frequency: 8.430281571404485e-6
allele num: 118620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+18A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+18A>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-71078469-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078469
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078469
    reference: chr 12
allele count: 8
allele frequency: 6.732419968357625e-5
allele num: 118828
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+15A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+15A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-71078481-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078481
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078481
    reference: chr 12
allele count: 2
allele frequency: 1.669867245553978e-5
allele num: 119770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.193+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.624+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.907+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.624+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.156+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1359+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1023+3A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.741+3A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1359+3A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

12-71078499-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078499
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078499
    reference: chr 12
allele count: 6
allele frequency: 4.965489845573266e-5
allele num: 120834
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1344T>C
  hgvsp: ENST00000283228.2:c.1344T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.609T>C
  hgvsp: ENST00000549308.1:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.609T>C
  hgvsp: ENST00000440835.2:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.892T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.141T>C
  hgvsp: ENST00000551219.1:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.1008T>C
  hgvsp: ENST00000342084.4:c.1008T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.178T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.726T>C
  hgvsp: ENST00000378778.1:c.726T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17950
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn448Asn
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-71078517-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078517
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078517
    reference: chr 12
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.874A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.123A>G
  hgvsp: ENST00000551219.1:c.123A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.591A>G
  hgvsp: ENST00000549308.1:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.591A>G
  hgvsp: ENST00000550661.1:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1326A>G
  hgvsp: ENST00000283228.2:c.1326A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.591A>G
  hgvsp: ENST00000440835.2:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.990A>G
  hgvsp: ENST00000342084.4:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.708A>G
  hgvsp: ENST00000378778.1:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.160A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser442Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/12-71078520-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078520
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078520
    reference: chr 12
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.120T>G
  hgvsp: ENSP00000448049.1:p.Asp40Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.705T>G
  hgvsp: ENSP00000368054.1:p.Asp235Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1323T>G
  hgvsp: ENSP00000283228.2:p.Asp441Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.588T>G
  hgvsp: ENSP00000446943.1:p.Asp196Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.157T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.588T>G
  hgvsp: ENSP00000391750.2:p.Asp196Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.871T>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.987T>G
  hgvsp: ENSP00000339605.4:p.Asp329Glu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.588T>G
  hgvsp: ENSP00000449616.1:p.Asp196Glu
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30937
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp441Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

12-71078522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078522
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078522
    reference: chr 12
allele count: 15
allele frequency: 1.239075484478515e-4
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.985G>A
  hgvsp: ENSP00000339605.4:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.155G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.586G>A
  hgvsp: ENSP00000449616.1:p.Asp196Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.118G>A
  hgvsp: ENSP00000448049.1:p.Asp40Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.586G>A
  hgvsp: ENSP00000446943.1:p.Asp196Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.703G>A
  hgvsp: ENSP00000368054.1:p.Asp235Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1321G>A
  hgvsp: ENSP00000283228.2:p.Asp441Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.586G>A
  hgvsp: ENSP00000391750.2:p.Asp196Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.869G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16441
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18068
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp441Asn
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

12-71078523-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078523
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078523
    reference: chr 12
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.868C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.585C>A
  hgvsp: ENST00000440835.2:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.585C>A
  hgvsp: ENST00000549308.1:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.154C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.984C>A
  hgvsp: ENST00000342084.4:c.984C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.585C>A
  hgvsp: ENST00000550661.1:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.117C>A
  hgvsp: ENST00000551219.1:c.117C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1320C>A
  hgvsp: ENST00000283228.2:c.1320C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.702C>A
  hgvsp: ENST00000378778.1:c.702C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr440Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

12-71078524-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078524
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078524
    reference: chr 12
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.584C>G
  hgvsp: ENSP00000449616.1:p.Thr195Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.701C>G
  hgvsp: ENSP00000368054.1:p.Thr234Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1319C>G
  hgvsp: ENSP00000283228.2:p.Thr440Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.867C>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.584C>G
  hgvsp: ENSP00000391750.2:p.Thr195Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.153C>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.584C>G
  hgvsp: ENSP00000446943.1:p.Thr195Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.116C>G
  hgvsp: ENSP00000448049.1:p.Thr39Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.983C>G
  hgvsp: ENSP00000339605.4:p.Thr328Ser
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr440Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-71078528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078528
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078528
    reference: chr 12
allele count: 4526
allele frequency: 3.737654015128993e-2
allele num: 121092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.580G>A
  hgvsp: ENSP00000446943.1:p.Val194Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.697G>A
  hgvsp: ENSP00000368054.1:p.Val233Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.112G>A
  hgvsp: ENSP00000448049.1:p.Val38Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.580G>A
  hgvsp: ENSP00000449616.1:p.Val194Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.149G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.979G>A
  hgvsp: ENSP00000339605.4:p.Val327Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.863G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1315G>A
  hgvsp: ENSP00000283228.2:p.Val439Ile
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.580G>A
  hgvsp: ENSP00000391750.2:p.Val194Ile
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11562
  bin: 3.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.25e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 17285
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 9.75e1
  variant carriers: 1875
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10793
  bin: 9.75e1
  variant carriers: 4365
hgvs: p.Val439Ile
num of homozygotes: 123
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

12-71078536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078536
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078536
    reference: chr 12
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.104C>T
  hgvsp: ENSP00000448049.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1307C>T
  hgvsp: ENSP00000283228.2:p.Pro436Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.689C>T
  hgvsp: ENSP00000368054.1:p.Pro230Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.971C>T
  hgvsp: ENSP00000339605.4:p.Pro324Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.572C>T
  hgvsp: ENSP00000449616.1:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.572C>T
  hgvsp: ENSP00000446943.1:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.855C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.572C>T
  hgvsp: ENSP00000391750.2:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.141C>T
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro436Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

12-71078547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078547
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078547
    reference: chr 12
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1296G>A
  hgvsp: ENST00000283228.2:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.960G>A
  hgvsp: ENST00000342084.4:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.93G>A
  hgvsp: ENST00000551219.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.561G>A
  hgvsp: ENST00000549308.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.130G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.561G>A
  hgvsp: ENST00000440835.2:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.561G>A
  hgvsp: ENST00000550661.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.678G>A
  hgvsp: ENST00000378778.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.844G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val432Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/12-71078577-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078577
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078574
    reference: chr 12
allele count: 1
allele frequency: 8.377875705836028e-6
allele num: 119362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-17_545-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-17_662-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.97_99delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-17_944-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-17_545-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-17_828-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-17_545-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-17_77-15delTTT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-17_1280-15delTTT
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CAAA
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

12-71078579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078579
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078579
    reference: chr 12
allele count: 1
allele frequency: 8.385744234800838e-6
allele num: 119250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.98T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-16T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

12-71078586-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078586
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078586
    reference: chr 12
allele count: 911
allele frequency: 7.662803021381828e-3
allele num: 118886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.91T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-23T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-23T>A
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 3.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 4.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 9.75e1
  variant carriers: 896
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 9
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

12-71078589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078589
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078589
    reference: chr 12
allele count: 1
allele frequency: 8.427723840345199e-6
allele num: 118656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.88A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-26A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-26A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-71078597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078597
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078597
    reference: chr 12
allele count: 15
allele frequency: 1.269164382170779e-4
allele num: 118188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.80T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-34T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-34T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8259
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-71078598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078598
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078598
    reference: chr 12
allele count: 1
allele frequency: 8.468978133098461e-6
allele num: 118078
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.79C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-35C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-35C>T
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

12-71078599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078599
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078599
    reference: chr 12
allele count: 1
allele frequency: 8.474145382438182e-6
allele num: 118006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.78T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-36T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-36T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-71078602-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078602
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078602
    reference: chr 12
allele count: 2
allele frequency: 1.702591344025607e-5
allele num: 117468
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.75A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-39A>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-39A>C
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-71078604-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078604
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078604
    reference: chr 12
allele count: 1
allele frequency: 8.530530769624486e-6
allele num: 117226
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.73G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-41G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-41G>T
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/12-71078605-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078605
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078605
    reference: chr 12
allele count: 3
allele frequency: 2.562525625256252e-5
allele num: 117072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.72G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-42G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-42G>T
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-71078605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078605
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078605
    reference: chr 12
allele count: 1
allele frequency: 8.541752084187508e-6
allele num: 117072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.72G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-42G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-42G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-71078606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078606
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078606
    reference: chr 12
allele count: 1
allele frequency: 8.562963470397836e-6
allele num: 116782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.71G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-43G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

12-71078606-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71078606
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71078605
    reference: chr 12
allele count: 1
allele frequency: 8.562963470397836e-6
allele num: 116782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000549107
  gene symbol: PTPRR
  hgvsc: ENST00000549107.1:n.70delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.77-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.662-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.545-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.828-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.545-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.944-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1280-44delA
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.545-44delA
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: CT
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-71091995-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71091995
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71091995
    reference: chr 12
allele count: 1
allele frequency: 8.54642417612471e-6
allele num: 117008
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+50G>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+50G>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

12-71092001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092001
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092001
    reference: chr 12
allele count: 2
allele frequency: 1.700275444622029e-5
allele num: 117628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+44G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+44G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-71092002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092002
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092002
    reference: chr 12
allele count: 1
allele frequency: 8.505281779985371e-6
allele num: 117574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+43G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+43G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17833
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ

12-71092005-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092005
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092006
    reference: chr 12
allele count: 3
allele frequency: 2.555322737261716e-5
allele num: 117402
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+39dupG
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+39dupG
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18243
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

12-71092005-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092005
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092005
    reference: chr 12
allele count: 1
allele frequency: 8.517742457539054e-6
allele num: 117402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+40C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+40C>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33118
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-71092007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092007
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092007
    reference: chr 12
allele count: 2
allele frequency: 1.697908177125781e-5
allele num: 117792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+38G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+38G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18755
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20894
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/12-71092010-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092010
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092010
    reference: chr 12
allele count: 2
allele frequency: 1.692677477233488e-5
allele num: 118156
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+35G>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+35G>T
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37639
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

12-71092022-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092022
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092022
    reference: chr 12
allele count: 1
allele frequency: 8.404208827780952e-6
allele num: 118988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+23T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+23T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-71092025-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092025
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092025
    reference: chr 12
allele count: 1
allele frequency: 8.392923087252828e-6
allele num: 119148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+20A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+20A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-71092030-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092030
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092030
    reference: chr 12
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+15T>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+15T>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-71092043-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092043
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092043
    reference: chr 12
allele count: 1
allele frequency: 8.324176738920521e-6
allele num: 120132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.544+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.544+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.943+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.661+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.544+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.76+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.827+2T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1279+2T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1279+2T>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

12-71092050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092050
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092050
    reference: chr 12
allele count: 2
allele frequency: 1.6622616732326e-5
allele num: 120318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.938T>C
  hgvsp: ENSP00000339605.4:p.Leu313Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1274T>C
  hgvsp: ENSP00000283228.2:p.Leu425Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.71T>C
  hgvsp: ENSP00000448049.1:p.Leu24Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.539T>C
  hgvsp: ENSP00000391750.2:p.Leu180Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.539T>C
  hgvsp: ENSP00000446943.1:p.Leu180Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.539T>C
  hgvsp: ENSP00000449616.1:p.Leu180Ser
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.822T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.656T>C
  hgvsp: ENSP00000368054.1:p.Leu219Ser
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu425Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-71092061-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092061
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092061
    reference: chr 12
allele count: 2
allele frequency: 1.659448067572725e-5
allele num: 120522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.927T>C
  hgvsp: ENST00000342084.4:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.528T>C
  hgvsp: ENST00000440835.2:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.528T>C
  hgvsp: ENST00000550661.1:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.528T>C
  hgvsp: ENST00000549308.1:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.811T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.60T>C
  hgvsp: ENST00000551219.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.645T>C
  hgvsp: ENST00000378778.1:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1263T>C
  hgvsp: ENST00000283228.2:c.1263T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr421Tyr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

12-71092065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092065
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092065
    reference: chr 12
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.923G>A
  hgvsp: ENSP00000339605.4:p.Arg308His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.56G>A
  hgvsp: ENSP00000448049.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1259G>A
  hgvsp: ENSP00000283228.2:p.Arg420His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.524G>A
  hgvsp: ENSP00000391750.2:p.Arg175His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.524G>A
  hgvsp: ENSP00000446943.1:p.Arg175His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.641G>A
  hgvsp: ENSP00000368054.1:p.Arg214His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.524G>A
  hgvsp: ENSP00000449616.1:p.Arg175His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.807G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg420His
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum

12-71092074-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092074
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092074
    reference: chr 12
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.515C>A
  hgvsp: ENSP00000449616.1:p.Thr172Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.515C>A
  hgvsp: ENSP00000391750.2:p.Thr172Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.47C>A
  hgvsp: ENSP00000448049.1:p.Thr16Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.632C>A
  hgvsp: ENSP00000368054.1:p.Thr211Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.914C>A
  hgvsp: ENSP00000339605.4:p.Thr305Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.515C>A
  hgvsp: ENSP00000446943.1:p.Thr172Asn
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.798C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1250C>A
  hgvsp: ENSP00000283228.2:p.Thr417Asn
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr417Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-71092079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092079
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092079
    reference: chr 12
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.627T>C
  hgvsp: ENST00000378778.1:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.510T>C
  hgvsp: ENST00000549308.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.909T>C
  hgvsp: ENST00000342084.4:c.909T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.793T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.42T>C
  hgvsp: ENST00000551219.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.510T>C
  hgvsp: ENST00000440835.2:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1245T>C
  hgvsp: ENST00000283228.2:c.1245T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.510T>C
  hgvsp: ENST00000550661.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His415His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

12-71092081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092081
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092081
    reference: chr 12
allele count: 10
allele frequency: 8.290499088045101e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.40C>T
  hgvsp: ENSP00000448049.1:p.His14Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1243C>T
  hgvsp: ENSP00000283228.2:p.His415Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.907C>T
  hgvsp: ENSP00000339605.4:p.His303Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.508C>T
  hgvsp: ENSP00000446943.1:p.His170Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.791C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.508C>T
  hgvsp: ENSP00000391750.2:p.His170Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.625C>T
  hgvsp: ENSP00000368054.1:p.His209Tyr
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.508C>T
  hgvsp: ENSP00000449616.1:p.His170Tyr
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His415Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

12-71092083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092083
    reference: chr 12
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.506G>A
  hgvsp: ENSP00000446943.1:p.Arg169His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1241G>A
  hgvsp: ENSP00000283228.2:p.Arg414His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.789G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.905G>A
  hgvsp: ENSP00000339605.4:p.Arg302His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.623G>A
  hgvsp: ENSP00000368054.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.38G>A
  hgvsp: ENSP00000448049.1:p.Arg13His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.506G>A
  hgvsp: ENSP00000391750.2:p.Arg169His
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.506G>A
  hgvsp: ENSP00000449616.1:p.Arg169His
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg414His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

12-71092084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092084
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092084
    reference: chr 12
allele count: 78
allele frequency: 6.467125445651273e-4
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.788C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.622C>T
  hgvsp: ENSP00000368054.1:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1240C>T
  hgvsp: ENSP00000283228.2:p.Arg414Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.904C>T
  hgvsp: ENSP00000339605.4:p.Arg302Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.505C>T
  hgvsp: ENSP00000391750.2:p.Arg169Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.37C>T
  hgvsp: ENSP00000448049.1:p.Arg13Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.505C>T
  hgvsp: ENSP00000446943.1:p.Arg169Cys
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.505C>T
  hgvsp: ENSP00000449616.1:p.Arg169Cys
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 27019
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg414Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

12-71092084-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092084
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092084
    reference: chr 12
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.622C>G
  hgvsp: ENSP00000368054.1:p.Arg208Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.904C>G
  hgvsp: ENSP00000339605.4:p.Arg302Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.505C>G
  hgvsp: ENSP00000449616.1:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1240C>G
  hgvsp: ENSP00000283228.2:p.Arg414Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.505C>G
  hgvsp: ENSP00000391750.2:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.505C>G
  hgvsp: ENSP00000446943.1:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.37C>G
  hgvsp: ENSP00000448049.1:p.Arg13Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.788C>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg414Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-71092085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092085
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092085
    reference: chr 12
allele count: 50
allele frequency: 4.145799475970946e-4
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.504G>A
  hgvsp: ENST00000550661.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.903G>A
  hgvsp: ENST00000342084.4:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.504G>A
  hgvsp: ENST00000549308.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.504G>A
  hgvsp: ENST00000440835.2:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.36G>A
  hgvsp: ENST00000551219.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.787G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.621G>A
  hgvsp: ENST00000378778.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1239G>A
  hgvsp: ENST00000283228.2:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21669
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro413Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

12-71092086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092086
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092086
    reference: chr 12
allele count: 11
allele frequency: 9.12106135986733e-5
allele num: 120600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.35C>T
  hgvsp: ENSP00000448049.1:p.Pro12Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.786C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1238C>T
  hgvsp: ENSP00000283228.2:p.Pro413Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.503C>T
  hgvsp: ENSP00000446943.1:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.620C>T
  hgvsp: ENSP00000368054.1:p.Pro207Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.503C>T
  hgvsp: ENSP00000391750.2:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.503C>T
  hgvsp: ENSP00000449616.1:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.902C>T
  hgvsp: ENSP00000339605.4:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro413Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-71092098-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092098
    reference: chr 12
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.608A>G
  hgvsp: ENSP00000368054.1:p.Glu203Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.491A>G
  hgvsp: ENSP00000449616.1:p.Glu164Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.890A>G
  hgvsp: ENSP00000339605.4:p.Glu297Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.774A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.23A>G
  hgvsp: ENSP00000448049.1:p.Glu8Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1226A>G
  hgvsp: ENSP00000283228.2:p.Glu409Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.491A>G
  hgvsp: ENSP00000446943.1:p.Glu164Gly
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.491A>G
  hgvsp: ENSP00000391750.2:p.Glu164Gly
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu409Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

12-71092103-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092103
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092103
    reference: chr 12
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1221C>A
  hgvsp: ENST00000283228.2:c.1221C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.18C>A
  hgvsp: ENST00000551219.1:c.18C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.486C>A
  hgvsp: ENST00000550661.1:c.486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.486C>A
  hgvsp: ENST00000440835.2:c.486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.885C>A
  hgvsp: ENST00000342084.4:c.885C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.486C>A
  hgvsp: ENST00000549308.1:c.486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.769C>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.603C>A
  hgvsp: ENST00000378778.1:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro407Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-71092120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092120
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092120
    reference: chr 12
allele count: 1
allele frequency: 8.343763037129745e-6
allele num: 119850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.469A>G
  hgvsp: ENSP00000446943.1:p.Met157Val
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.469A>G
  hgvsp: ENSP00000391750.2:p.Met157Val
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.868A>G
  hgvsp: ENSP00000339605.4:p.Met290Val
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.469A>G
  hgvsp: ENSP00000449616.1:p.Met157Val
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.752A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1204A>G
  hgvsp: ENSP00000283228.2:p.Met402Val
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.1A>G
  hgvsp: ENSP00000448049.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.586A>G
  hgvsp: ENSP00000368054.1:p.Met196Val
  variant of: http://identifiers.org/hgnc/9680
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45530
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

12-71092124-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092124
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092124
    reference: chr 12
allele count: 26
allele frequency: 2.175186145737472e-4
allele num: 119530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.465A>G
  hgvsp: ENSP00000449616.1:p.Ile155Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.864A>G
  hgvsp: ENSP00000339605.4:p.Ile288Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1200A>G
  hgvsp: ENSP00000283228.2:p.Ile400Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.465A>G
  hgvsp: ENSP00000391750.2:p.Ile155Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.582A>G
  hgvsp: ENSP00000368054.1:p.Ile194Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.465A>G
  hgvsp: ENSP00000446943.1:p.Ile155Met
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.748A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25742
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile400Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

12-71092132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092132
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092132
    reference: chr 12
allele count: 1
allele frequency: 8.431703204047217e-6
allele num: 118600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-3C>T
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-3C>T
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1195-3C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-71092133-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092133
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092134
    reference: chr 12
allele count: 1
allele frequency: 8.442095665828085e-6
allele num: 118454
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-5dupT
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-5dupT
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1195-5dupT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

12-71092145-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092145
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092145
    reference: chr 12
allele count: 2
allele frequency: 1.723009063027672e-5
allele num: 116076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-16T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-16T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-71092159-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092159
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092159
    reference: chr 12
allele count: 2
allele frequency: 1.761245552854979e-5
allele num: 113556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-30A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-30A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

12-71092161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092161
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092161
    reference: chr 12
allele count: 2
allele frequency: 1.764072891491876e-5
allele num: 113374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-32A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-32A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

12-71092163-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092163
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092163
    reference: chr 12
allele count: 3
allele frequency: 2.659338711107171e-5
allele num: 112810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-34A>G
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-34A>G
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10423
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

12-71092174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092174
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092174
    reference: chr 12
allele count: 5
allele frequency: 4.550501465261472e-5
allele num: 109878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000449616
  ensembl transcript: ENST00000550661
  gene symbol: PTPRR
  hgvsc: ENST00000550661.1:c.460-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000446943
  ensembl transcript: ENST00000549308
  gene symbol: PTPRR
  hgvsc: ENST00000549308.1:c.460-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl transcript: ENST00000548220
  gene symbol: PTPRR
  hgvsc: ENST00000548220.1:n.743-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000448049
  ensembl transcript: ENST00000551219
  gene symbol: PTPRR
  hgvsc: ENST00000551219.1:c.-9-45G>A
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000368054
  ensembl transcript: ENST00000378778
  gene symbol: PTPRR
  hgvsc: ENST00000378778.1:c.577-45G>A
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15456
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7754
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

12-71092176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71092176
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 71092176
    reference: chr 12
allele count: 3
allele frequency: 2.730599093441101e-5
allele num: 109866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000339605
  ensembl transcript: ENST00000342084
  gene symbol: PTPRR
  hgvsc: ENST00000342084.4:c.859-47T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000391750
  ensembl transcript: ENST00000440835
  gene symbol: PTPRR
  hgvsc: ENST00000440835.2:c.460-47T>C
  variant of: http://identifiers.org/hgnc/9680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153233
  ensembl protein: ENSP00000283228
  ensembl transcript: ENST00000283228
  gene symbol: PTPRR
  hgvsc: ENST00000283228.2:c.1195-47T>C
  variant of: http://identifiers.org/hgnc/9680
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3135
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15212
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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SIO_000300: -1.021e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

South Asian
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.567600487210719e-5
allele num: 65680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.043398867855621e-5
allele num: 65716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 3.68e0

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 1.0184e1

QD
type: SiteQuality
SIO_000300: 1.459e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.716818914562064e-5
allele num: 14888
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
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DP
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VQSLOD
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MQRankSum
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QD
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -8.38e-1

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 6.062e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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MQ
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FS
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.482e0

ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.530502923260583e-5
allele num: 65338
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
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BaseQRankSum
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SIO_000300: -3.951e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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FS
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 65442
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14384
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.373626373626374e-4
allele num: 65520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.851912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.428e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523368472366096e-5
allele num: 65644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 1.861965e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 3.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.955034213098729e-4
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

MQ
type: SiteQuality
SIO_000300: 6.048e1

FS
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 1.877424e6

QD
type: SiteQuality
SIO_000300: 1.369e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7808
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14848
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 8.05e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.884689e6

VQSLOD
type: SiteQuality
SIO_000300: -3.676e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.687e1

GenotypeQuality
all individuals: 8642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2908
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variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.212525387250295e-4
allele num: 65978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.415e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.889793e6

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
all individuals: 812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01987074953192e-5
allele num: 66228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.399e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

FS
type: SiteQuality
SIO_000300: 2.048e0

DP
type: SiteQuality
SIO_000300: 1.906812e6

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.687768899815612e-4
allele num: 16270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.027e0

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.364e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.92186e6

QD
type: SiteQuality
SIO_000300: 1.182e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.924878e6

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.069e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.27e-1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.925051e6

GenotypeQuality
all individuals: 1819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7832
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.652745647144771e-4
allele num: 16426
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.248554913294797e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-2

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

DP
type: SiteQuality
SIO_000300: 1.925897e6

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3885
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7819
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 1.92538e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7819
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.216e1

DP
type: SiteQuality
SIO_000300: 1.925338e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2546
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8399
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3517
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 29788
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2712
bin: 7.25e1
variant carriers: 5

African
type: Population
allele count: 75
allele frequency: 7.259001161440186e-3
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 466
allele frequency: 2.835929892891918e-2
allele num: 16432
num of homozygotes: 16

Latino
type: Population
allele count: 128
allele frequency: 1.106692028358983e-2
allele num: 11566
num of homozygotes: 2

Other
type: Population
allele count: 51
allele frequency: 5.641592920353982e-2
allele num: 904
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 422
allele frequency: 6.3804052010886e-2
allele num: 6614
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 3384
allele frequency: 5.08153887737634e-2
allele num: 66594
num of homozygotes: 89

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.632e0

DP
type: SiteQuality
SIO_000300: 2.179091e6

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9188
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.911138e6

VQSLOD
type: SiteQuality
SIO_000300: -2.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.299e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.61e-1

FS
type: SiteQuality
SIO_000300: 3.023e0

MQ
type: SiteQuality
SIO_000300: 5.828e1

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 2702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

DP
type: SiteQuality
SIO_000300: 1.909895e6

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.23e-1

FS
type: SiteQuality
SIO_000300: 2.263e0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.395497569710924e-5
allele num: 15636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.187e0

QD
type: SiteQuality
SIO_000300: 2.945e1

DP
type: SiteQuality
SIO_000300: 1.871786e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.88e1

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28534
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516760200212346e-5
allele num: 65930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.950000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

FS
type: SiteQuality
SIO_000300: 2.175e0

QD
type: SiteQuality
SIO_000300: 1.611e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

DP
type: SiteQuality
SIO_000300: 1.865875e6

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1075
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 7.953867568104991e-4
allele num: 10058
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.681818181818182e-3
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.698677800974252e-4
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 665
allele frequency: 1.01082264242719e-2
allele num: 65788
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 207
allele frequency: 3.13826561552456e-2
allele num: 6596
num of homozygotes: 6

South Asian
type: Population
allele count: 16
allele frequency: 1.034928848641656e-3
allele num: 15460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.858903e6

QD
type: SiteQuality
SIO_000300: 1.477e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
all individuals: 3591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 1.944e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

QD
type: SiteQuality
SIO_000300: 1.939e1

DP
type: SiteQuality
SIO_000300: 1.826039e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.752745968684272e-3
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.788815e6

QD
type: SiteQuality
SIO_000300: 1.497e1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 2.109e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 500
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 1622
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variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.591957811470006e-5
allele num: 15170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.578e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.781412e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.136e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
all individuals: 2644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1757
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527510463446675e-5
allele num: 65466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.772814e6

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.614e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3482
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1621
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1136
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variant carriers: 0

GenotypeQuality
all individuals: 6682
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.02552157180474e-4
allele num: 9874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.741693e6

FS
type: SiteQuality
SIO_000300: 1.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3519
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GenotypeQuality
all individuals: 1635
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65162
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

DP
type: SiteQuality
SIO_000300: 1.733804e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.66e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1614
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.61027784607819e-5
allele num: 65072
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.726762e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.596e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6847
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.726762e6

QD
type: SiteQuality
SIO_000300: 1.087e1

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539456264047538e-5
allele num: 64958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.029e1

DP
type: SiteQuality
SIO_000300: 1.720032e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6679
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017087062652563e-4
allele num: 9832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.720032e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.029e1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.015506671474937e-5
allele num: 11092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: -6.578000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

DP
type: SiteQuality
SIO_000300: 1.505305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.775e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.233501911927963e-4
allele num: 16214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.459e1

DP
type: SiteQuality
SIO_000300: 1.525532e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1248
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variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55115716324378e-5
allele num: 64468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.529679e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

QD
type: SiteQuality
SIO_000300: 8.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1601
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variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.579952267303103e-4
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.891999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.543608e6

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55448468832582e-5
allele num: 64330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.543608e6

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 9.891999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 942
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variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095017022593625e-5
allele num: 64620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.646e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.731e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.555728e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 167
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GenotypeQuality
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GenotypeQuality
all individuals: 5818
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GenotypeQuality
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GenotypeQuality
all individuals: 2694
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variant carriers: 2

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083754779819908e-5
allele num: 64856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.111e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.570657e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.617517e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.539882968894364e-4
allele num: 6494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

FS
type: SiteQuality
SIO_000300: 3.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

DP
type: SiteQuality
SIO_000300: 1.623236e6

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.10798924993892e-5
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.939e0

DP
type: SiteQuality
SIO_000300: 1.632058e6

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512172992590352e-5
allele num: 66130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 4.897e0

MQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

DP
type: SiteQuality
SIO_000300: 1.646027e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 78
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72762645914397e-5
allele num: 10280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.879e-1

FS
type: SiteQuality
SIO_000300: 4.294e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 1.649528e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 899
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759324419422942e-4
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

DP
type: SiteQuality
SIO_000300: 1.652724e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 467
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.623e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.653373e6

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0578e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.37e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.233e0

DP
type: SiteQuality
SIO_000300: 1.653914e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.654018e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.704968944099379e-4
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.654596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 384
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GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.654027e6

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.375e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.78e-1

FS
type: SiteQuality
SIO_000300: 7.532e0

MQRankSum
type: SiteQuality
SIO_000300: -1.084e0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
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variant carriers: 78

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.070663811563169e-3
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.023818844289199e-3
allele num: 66418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

DP
type: SiteQuality
SIO_000300: 1.657203e6

QD
type: SiteQuality
SIO_000300: 1.083e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6190
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GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.657203e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
all individuals: 390
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2723
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variant carriers: 50

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.514320857494289e-4
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.524271844660194e-3
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.559701267804981e-4
allele num: 66414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 1.655787e6

QD
type: SiteQuality
SIO_000300: 1.029e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053994639684404e-4
allele num: 66414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.488372093023256e-4
allele num: 8600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

DP
type: SiteQuality
SIO_000300: 1.652264e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 458
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GenotypeQuality
all individuals: 1555
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GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

Other
type: Population
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65870
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 2.300884955752212e-3
allele num: 11300
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -5.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.531018433461939e-5
allele num: 65316
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
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SIO_000300: 1.6206e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533224985434363e-5
allele num: 65222
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 2.379e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.61815e6

FS
type: SiteQuality
SIO_000300: 7.859e0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.798237727027513e-4
allele num: 11122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.752e1

FS
type: SiteQuality
SIO_000300: 4.432e0

VQSLOD
type: SiteQuality
SIO_000300: -3.337e-1

DP
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SIO_000300: 1.544332e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -9.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
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African
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 2
allele frequency: 2.476473501733531e-4
allele num: 8076
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62028
num of homozygotes: 0

South Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6386
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 2
allele frequency: 2.482621648460775e-4
allele num: 8056
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61914
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 3.038e0

DP
type: SiteQuality
SIO_000300: 1.370712e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Non-Finnish)
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allele count: 0
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South Asian
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allele frequency: 1.257703433530374e-4
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East Asian
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Other
type: Population
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.737e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.905e0

MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
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