http://identifiers.org/exac.variant/11-113212697-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113212697
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113212697
    reference: chr 11
allele count: 91
allele frequency: 7.535358219336888e-4
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.985+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.985+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+3148A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.985+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.985+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.271+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*699+50A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1003+50A>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4911
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19407
  bin: 9.75e1
  variant carriers: 90
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

11-113212699-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113212699
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113212699
    reference: chr 11
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.985+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*699+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.985+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.985+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1003+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+3150C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.985+52C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.271+52C>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-113214951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214951
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214951
    reference: chr 11
allele count: 1
allele frequency: 8.783024170882518e-6
allele num: 113856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5402C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-43C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-43C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS

11-113214954-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214954
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214954
    reference: chr 11
allele count: 3
allele frequency: 2.628857848893251e-5
allele num: 114118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5405T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-40T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-40T>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

11-113214955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214955
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214955
    reference: chr 11
allele count: 2
allele frequency: 1.752326213047821e-5
allele num: 114134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5406G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-39G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-39G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33715
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

11-113214962-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214962
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214962
    reference: chr 11
allele count: 1
allele frequency: 8.740341922175995e-6
allele num: 114412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5413T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-32T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-32T>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-113214964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214964
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214964
    reference: chr 11
allele count: 1
allele frequency: 8.744163271016596e-6
allele num: 114362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5415C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-30C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-30C>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33713
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

11-113214970-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214970
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214970
    reference: chr 11
allele count: 5
allele frequency: 4.35206461945547e-5
allele num: 114888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-24A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5421A>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-113214972-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214972
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214972
    reference: chr 11
allele count: 2
allele frequency: 1.738223535546671e-5
allele num: 115060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-22A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5423A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-22A>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

11-113214973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214973
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214973
    reference: chr 11
allele count: 1
allele frequency: 8.693233187287017e-6
allele num: 115032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5424C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-21C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-21C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

11-113214981-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214981
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214979
    reference: chr 11
allele count: 2
allele frequency: 1.725893581401771e-5
allele num: 115882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-9_*700-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-9_986-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5436_223+5437delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-9_986-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-9_986-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-9_986-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-9_1004-8delGT
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-9_272-8delGT
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33713
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTG
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

11-113214990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113214990
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113214990
    reference: chr 11
allele count: 18
allele frequency: 1.544401544401545e-4
allele num: 116550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.986-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.986-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.986-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*700-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.986-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5441G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1004-4G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.272-4G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
hgvs: c.986-4G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-113215003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215003
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215003
    reference: chr 11
allele count: 1
allele frequency: 8.454514710855598e-6
allele num: 118280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.995A>G
  hgvsp: ENSP00000435291.1:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.995A>G
  hgvsp: ENSP00000376743.1:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1013A>G
  hgvsp: ENSP00000419652.2:p.Gln338Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.995A>G
  hgvsp: ENSP00000315160.3:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.995A>G
  hgvsp: ENSP00000433757.1:p.Gln332Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5454A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.281A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*709A>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln332Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

11-113215005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215005
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215005
    reference: chr 11
allele count: 3
allele frequency: 2.532115667043671e-5
allele num: 118478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5456C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.997C>T
  hgvsp: ENSP00000315160.3:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.997C>T
  hgvsp: ENSP00000433757.1:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1015C>T
  hgvsp: ENSP00000419652.2:p.Arg339Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.997C>T
  hgvsp: ENSP00000435291.1:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.283C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.997C>T
  hgvsp: ENSP00000376743.1:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*711C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33707
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg333Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

11-113215006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215006
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215006
    reference: chr 11
allele count: 14
allele frequency: 1.178590069536814e-4
allele num: 118786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.998G>A
  hgvsp: ENSP00000315160.3:p.Arg333His
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5457G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1016G>A
  hgvsp: ENSP00000419652.2:p.Arg339His
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.998G>A
  hgvsp: ENSP00000433757.1:p.Arg333His
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.998G>A
  hgvsp: ENSP00000376743.1:p.Arg333His
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.998G>A
  hgvsp: ENSP00000435291.1:p.Arg333His
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.284G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*712G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8378
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg333His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-113215007-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215007
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215007
    reference: chr 11
allele count: 1
allele frequency: 8.409863087428936e-6
allele num: 118908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*713T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1017T>C
  hgvsp: ENST00000483239.2:c.1017T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.999T>C
  hgvsp: ENST00000494714.1:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.999T>C
  hgvsp: ENST00000314756.3:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.999T>C
  hgvsp: ENST00000393020.1:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.999T>C
  hgvsp: ENST00000529221.1:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.285T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5458T>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg333Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

11-113215008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215008
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215008
    reference: chr 11
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5459G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1000G>A
  hgvsp: ENSP00000433757.1:p.Val334Met
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1018G>A
  hgvsp: ENSP00000419652.2:p.Val340Met
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1000G>A
  hgvsp: ENSP00000435291.1:p.Val334Met
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*714G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1000G>A
  hgvsp: ENSP00000315160.3:p.Val334Met
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1000G>A
  hgvsp: ENSP00000376743.1:p.Val334Met
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.286G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val334Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

11-113215008-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215008
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215008
    reference: chr 11
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.286G>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1000G>C
  hgvsp: ENSP00000376743.1:p.Val334Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*714G>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1018G>C
  hgvsp: ENSP00000419652.2:p.Val340Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5459G>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1000G>C
  hgvsp: ENSP00000435291.1:p.Val334Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1000G>C
  hgvsp: ENSP00000433757.1:p.Val334Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1000G>C
  hgvsp: ENSP00000315160.3:p.Val334Leu
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val334Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-113215014-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215014
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215014
    reference: chr 11
allele count: 1
allele frequency: 8.353521009105338e-6
allele num: 119710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1006G>T
  hgvsp: ENSP00000435291.1:p.Val336Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1006G>T
  hgvsp: ENSP00000433757.1:p.Val336Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1006G>T
  hgvsp: ENSP00000376743.1:p.Val336Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5465G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*720G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1024G>T
  hgvsp: ENSP00000419652.2:p.Val342Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1006G>T
  hgvsp: ENSP00000315160.3:p.Val336Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.292G>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9171
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val336Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

11-113215017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215017
    reference: chr 11
allele count: 1
allele frequency: 8.339866228545694e-6
allele num: 119906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1009A>G
  hgvsp: ENSP00000435291.1:p.Ile337Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1027A>G
  hgvsp: ENSP00000419652.2:p.Ile343Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1009A>G
  hgvsp: ENSP00000315160.3:p.Ile337Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*723A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1009A>G
  hgvsp: ENSP00000433757.1:p.Ile337Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.295A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5468A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1009A>G
  hgvsp: ENSP00000376743.1:p.Ile337Val
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33703
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile337Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

11-113215017-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215017
    reference: chr 11
allele count: 2
allele frequency: 1.667973245709139e-5
allele num: 119906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*723A>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1009A>T
  hgvsp: ENSP00000315160.3:p.Ile337Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5468A>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1009A>T
  hgvsp: ENSP00000435291.1:p.Ile337Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1009A>T
  hgvsp: ENSP00000433757.1:p.Ile337Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1027A>T
  hgvsp: ENSP00000419652.2:p.Ile343Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1009A>T
  hgvsp: ENSP00000376743.1:p.Ile337Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.295A>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile337Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-113215022-C-CCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215022
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215024
    reference: chr 11
allele count: 1
allele frequency: 8.319329129299013e-6
allele num: 120202
alternate allele: CCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1033_1034dupCA
  hgvsp: ENSP00000419652.2:p.Asp346MetfsTer38
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*729_*730dupCA
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1015_1016dupCA
  hgvsp: ENSP00000433757.1:p.Asp340MetfsTer38
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1015_1016dupCA
  hgvsp: ENSP00000376743.1:p.Asp340MetfsTer38
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1015_1016dupCA
  hgvsp: ENSP00000315160.3:p.Asp340MetfsTer38
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1015_1016dupCA
  hgvsp: ENSP00000435291.1:p.Asp340MetfsTer38
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5474_223+5475dupCA
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.301_302dupCA
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp340MetfsTer38
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-113215025-TGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215025
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215023
    reference: chr 11
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5477_223+5478delGA
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.304_305delGA
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1018_1019delGA
  hgvsp: ENSP00000433757.1:p.Asp340GlnfsTer31
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1036_1037delGA
  hgvsp: ENSP00000419652.2:p.Asp346GlnfsTer31
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*732_*733delGA
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1018_1019delGA
  hgvsp: ENSP00000376743.1:p.Asp340GlnfsTer31
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1018_1019delGA
  hgvsp: ENSP00000315160.3:p.Asp340GlnfsTer31
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1018_1019delGA
  hgvsp: ENSP00000435291.1:p.Asp340GlnfsTer31
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp340GlnfsTer31
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: TGA
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

11-113215043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215043
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215043
    reference: chr 11
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1053G>A
  hgvsp: ENST00000483239.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1035G>A
  hgvsp: ENST00000393020.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1035G>A
  hgvsp: ENST00000314756.3:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1035G>A
  hgvsp: ENST00000529221.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*749G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5494G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1035G>A
  hgvsp: ENST00000494714.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.321G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu345Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-113215045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215045
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215045
    reference: chr 11
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.323C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1037C>T
  hgvsp: ENSP00000435291.1:p.Ala346Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1055C>T
  hgvsp: ENSP00000419652.2:p.Ala352Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5496C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1037C>T
  hgvsp: ENSP00000315160.3:p.Ala346Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*751C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1037C>T
  hgvsp: ENSP00000376743.1:p.Ala346Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1037C>T
  hgvsp: ENSP00000433757.1:p.Ala346Val
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala346Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-113215047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215047
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215047
    reference: chr 11
allele count: 6
allele frequency: 4.960153434079561e-5
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1039G>A
  hgvsp: ENSP00000376743.1:p.Ala347Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.325G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*753G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5498G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1057G>A
  hgvsp: ENSP00000419652.2:p.Ala353Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1039G>A
  hgvsp: ENSP00000315160.3:p.Ala347Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1039G>A
  hgvsp: ENSP00000433757.1:p.Ala347Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1039G>A
  hgvsp: ENSP00000435291.1:p.Ala347Thr
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala347Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS

11-113215047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215047
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215047
    reference: chr 11
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5498G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1039G>T
  hgvsp: ENSP00000376743.1:p.Ala347Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1039G>T
  hgvsp: ENSP00000315160.3:p.Ala347Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1039G>T
  hgvsp: ENSP00000433757.1:p.Ala347Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1039G>T
  hgvsp: ENSP00000435291.1:p.Ala347Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1057G>T
  hgvsp: ENSP00000419652.2:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.325G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*753G>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33702
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala347Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

11-113215066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215066
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215066
    reference: chr 11
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1058T>C
  hgvsp: ENSP00000435291.1:p.Val353Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1058T>C
  hgvsp: ENSP00000433757.1:p.Val353Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5517T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.344T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1058T>C
  hgvsp: ENSP00000376743.1:p.Val353Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1058T>C
  hgvsp: ENSP00000315160.3:p.Val353Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1076T>C
  hgvsp: ENSP00000419652.2:p.Val359Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*772T>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val353Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

11-113215066-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215066
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215066
    reference: chr 11
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.344T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1058T>G
  hgvsp: ENSP00000435291.1:p.Val353Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1058T>G
  hgvsp: ENSP00000376743.1:p.Val353Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1058T>G
  hgvsp: ENSP00000315160.3:p.Val353Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5517T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1076T>G
  hgvsp: ENSP00000419652.2:p.Val359Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*772T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1058T>G
  hgvsp: ENSP00000433757.1:p.Val353Gly
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val353Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

11-113215070-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215070
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215070
    reference: chr 11
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*776G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1062G>T
  hgvsp: ENST00000314756.3:c.1062G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1062G>T
  hgvsp: ENST00000494714.1:c.1062G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1080G>T
  hgvsp: ENST00000483239.2:c.1080G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.348G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5521G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1062G>T
  hgvsp: ENST00000529221.1:c.1062G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1062G>T
  hgvsp: ENST00000393020.1:c.1062G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33699
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu354Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-113215077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215077
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215077
    reference: chr 11
allele count: 9
allele frequency: 7.433470439565885e-5
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*783C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1069C>T
  hgvsp: ENSP00000376743.1:p.Arg357Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.355C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1069C>T
  hgvsp: ENSP00000435291.1:p.Arg357Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1087C>T
  hgvsp: ENSP00000419652.2:p.Arg363Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5528C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1069C>T
  hgvsp: ENSP00000315160.3:p.Arg357Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1069C>T
  hgvsp: ENSP00000433757.1:p.Arg357Trp
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33705
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg357Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-113215078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215078
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215078
    reference: chr 11
allele count: 3
allele frequency: 2.477987213585978e-5
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1070G>A
  hgvsp: ENSP00000433757.1:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1070G>A
  hgvsp: ENSP00000435291.1:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.356G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1088G>A
  hgvsp: ENSP00000419652.2:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*784G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1070G>A
  hgvsp: ENSP00000315160.3:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1070G>A
  hgvsp: ENSP00000376743.1:p.Arg357Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5529G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg357Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-113215086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215086
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215086
    reference: chr 11
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1096A>G
  hgvsp: ENSP00000419652.2:p.Ser366Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*792A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1078A>G
  hgvsp: ENSP00000376743.1:p.Ser360Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1078A>G
  hgvsp: ENSP00000435291.1:p.Ser360Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.364A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1078A>G
  hgvsp: ENSP00000433757.1:p.Ser360Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5537A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1078A>G
  hgvsp: ENSP00000315160.3:p.Ser360Gly
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser360Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

11-113215086-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215086
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215086
    reference: chr 11
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1096A>T
  hgvsp: ENSP00000419652.2:p.Ser366Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1078A>T
  hgvsp: ENSP00000376743.1:p.Ser360Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1078A>T
  hgvsp: ENSP00000433757.1:p.Ser360Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*792A>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.364A>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1078A>T
  hgvsp: ENSP00000315160.3:p.Ser360Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1078A>T
  hgvsp: ENSP00000435291.1:p.Ser360Cys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5537A>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser360Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/11-113215094-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215094
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215094
    reference: chr 11
allele count: 2
allele frequency: 1.651855033202286e-5
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1104C>A
  hgvsp: ENST00000483239.2:c.1104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1086C>A
  hgvsp: ENST00000393020.1:c.1086C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1086C>A
  hgvsp: ENST00000494714.1:c.1086C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1086C>A
  hgvsp: ENST00000314756.3:c.1086C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*800C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1086C>A
  hgvsp: ENST00000529221.1:c.1086C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.372C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5545C>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala362Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

11-113215109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215109
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215109
    reference: chr 11
allele count: 12
allele frequency: 9.913586570394725e-5
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.387C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5560C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1101C>T
  hgvsp: ENST00000494714.1:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1101C>T
  hgvsp: ENST00000314756.3:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1101C>T
  hgvsp: ENST00000393020.1:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1101C>T
  hgvsp: ENST00000529221.1:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*815C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1119C>T
  hgvsp: ENST00000483239.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu367Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

11-113215110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215110
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215110
    reference: chr 11
allele count: 4
allele frequency: 3.304638059516532e-5
allele num: 121042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1120G>A
  hgvsp: ENSP00000419652.2:p.Ala374Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1102G>A
  hgvsp: ENSP00000376743.1:p.Ala368Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5561G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1102G>A
  hgvsp: ENSP00000435291.1:p.Ala368Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*816G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1102G>A
  hgvsp: ENSP00000433757.1:p.Ala368Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1102G>A
  hgvsp: ENSP00000315160.3:p.Ala368Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.388G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala368Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-113215117-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215117
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215117
    reference: chr 11
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1109C>A
  hgvsp: ENSP00000376743.1:p.Thr370Asn
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1109C>A
  hgvsp: ENSP00000315160.3:p.Thr370Asn
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*823C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.395C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1109C>A
  hgvsp: ENSP00000435291.1:p.Thr370Asn
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1109C>A
  hgvsp: ENSP00000433757.1:p.Thr370Asn
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1127C>A
  hgvsp: ENSP00000419652.2:p.Thr376Asn
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5568C>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr370Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-113215122-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215122
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215122
    reference: chr 11
allele count: 1
allele frequency: 8.269793751343841e-6
allele num: 120922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*828A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1114A>G
  hgvsp: ENSP00000315160.3:p.Ser372Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1114A>G
  hgvsp: ENSP00000376743.1:p.Ser372Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5573A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1132A>G
  hgvsp: ENSP00000419652.2:p.Ser378Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1114A>G
  hgvsp: ENSP00000433757.1:p.Ser372Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1114A>G
  hgvsp: ENSP00000435291.1:p.Ser372Gly
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.400A>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser372Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-113215124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215124
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215124
    reference: chr 11
allele count: 1709
allele frequency: 1.413401260399954e-2
allele num: 120914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1116C>T
  hgvsp: ENST00000494714.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.402C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1134C>T
  hgvsp: ENST00000483239.2:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5575C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1116C>T
  hgvsp: ENST00000314756.3:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1116C>T
  hgvsp: ENST00000393020.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1116C>T
  hgvsp: ENST00000529221.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*830C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 5.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 9.75e1
  variant carriers: 1096
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 4.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34063
  bin: 9.75e1
  variant carriers: 1636
hgvs: p.Ser372Ser
num of homozygotes: 70
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-113215125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215125
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215125
    reference: chr 11
allele count: 3
allele frequency: 2.481225394514838e-5
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1117G>A
  hgvsp: ENSP00000376743.1:p.Gly373Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1117G>A
  hgvsp: ENSP00000435291.1:p.Gly373Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1135G>A
  hgvsp: ENSP00000419652.2:p.Gly379Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1117G>A
  hgvsp: ENSP00000315160.3:p.Gly373Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5576G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1117G>A
  hgvsp: ENSP00000433757.1:p.Gly373Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.403G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*831G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33082
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly373Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

11-113215128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215128
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215128
    reference: chr 11
allele count: 8
allele frequency: 6.618681227765367e-5
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*834C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1120C>T
  hgvsp: ENSP00000433757.1:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5579C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1120C>T
  hgvsp: ENSP00000315160.3:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1120C>T
  hgvsp: ENSP00000376743.1:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.406C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1120C>T
  hgvsp: ENSP00000435291.1:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1138C>T
  hgvsp: ENSP00000419652.2:p.Arg380Trp
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg374Trp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-113215129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215129
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215129
    reference: chr 11
allele count: 2
allele frequency: 1.654944145635085e-5
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1121G>A
  hgvsp: ENSP00000435291.1:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1139G>A
  hgvsp: ENSP00000419652.2:p.Arg380Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.407G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1121G>A
  hgvsp: ENSP00000315160.3:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1121G>A
  hgvsp: ENSP00000433757.1:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5580G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*835G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1121G>A
  hgvsp: ENSP00000376743.1:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg374Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

11-113215144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215144
    reference: chr 11
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1136A>G
  hgvsp: ENSP00000435291.1:p.Asn379Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.422A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1136A>G
  hgvsp: ENSP00000433757.1:p.Asn379Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5595A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1136A>G
  hgvsp: ENSP00000376743.1:p.Asn379Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*850A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1136A>G
  hgvsp: ENSP00000315160.3:p.Asn379Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1154A>G
  hgvsp: ENSP00000419652.2:p.Asn385Ser
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn379Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-113215145-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215145
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215145
    reference: chr 11
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*851C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1137C>A
  hgvsp: ENSP00000315160.3:p.Asn379Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.423C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1137C>A
  hgvsp: ENSP00000433757.1:p.Asn379Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1155C>A
  hgvsp: ENSP00000419652.2:p.Asn385Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1137C>A
  hgvsp: ENSP00000435291.1:p.Asn379Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5596C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1137C>A
  hgvsp: ENSP00000376743.1:p.Asn379Lys
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33074
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn379Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

11-113215155-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215155
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215155
    reference: chr 11
allele count: 2
allele frequency: 1.665889251682548e-5
allele num: 120056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1147C>G
  hgvsp: ENSP00000435291.1:p.Leu383Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1147C>G
  hgvsp: ENSP00000315160.3:p.Leu383Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1147C>G
  hgvsp: ENSP00000376743.1:p.Leu383Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1147C>G
  hgvsp: ENSP00000433757.1:p.Leu383Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.433C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*861C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5606C>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1165C>G
  hgvsp: ENSP00000419652.2:p.Leu389Val
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33073
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu383Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

11-113215159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215159
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215159
    reference: chr 11
allele count: 4
allele frequency: 3.338563749874804e-5
allele num: 119812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1151C>T
  hgvsp: ENSP00000315160.3:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.437C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1151C>T
  hgvsp: ENSP00000433757.1:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1151C>T
  hgvsp: ENSP00000435291.1:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5610C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*865C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1151C>T
  hgvsp: ENSP00000376743.1:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1169C>T
  hgvsp: ENSP00000419652.2:p.Thr390Ile
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr384Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/11-113215168-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215168
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215168
    reference: chr 11
allele count: 1
allele frequency: 8.386869517084054e-6
allele num: 119234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1154+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5619C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1154+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1154+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*868+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1154+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.440+6C>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1172+6C>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1154+6C>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-113215174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215174
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215174
    reference: chr 11
allele count: 1
allele frequency: 8.411136344520145e-6
allele num: 118890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.440+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1172+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1154+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1154+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1154+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5625C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*868+12C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1154+12C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

11-113215191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113215191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113215191
    reference: chr 11
allele count: 10
allele frequency: 8.457231778894132e-5
allele num: 118242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1172+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*868+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.223+5642G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1154+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1154+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1154+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1154+29G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.440+29G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-113220759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220759
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220759
    reference: chr 11
allele count: 10
allele frequency: 8.238996819747228e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1155-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1234G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1155-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*869-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1173-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1155-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1155-36G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.441-36G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

11-113220768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220768
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220768
    reference: chr 11
allele count: 43
allele frequency: 3.542418400804046e-4
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1155-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1155-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.441-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*869-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1155-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1155-27C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1225C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1173-27C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31124
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

11-113220774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220774
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220774
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1155-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*869-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.441-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1155-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1219G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1155-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1173-21G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1155-21G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7574
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-113220775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220775
    reference: chr 11
allele count: 31
allele frequency: 2.553794444261377e-4
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.441-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1218G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1155-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1173-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*869-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1155-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1155-20G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1155-20G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

11-113220784-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220784
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220784
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.441-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1155-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1173-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1209G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*869-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1155-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1155-11G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1155-11G>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-113220798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220798
    reference: chr 11
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*872A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1158A>G
  hgvsp: ENST00000494714.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1195A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1158A>G
  hgvsp: ENST00000529221.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1158A>G
  hgvsp: ENST00000393020.1:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1176A>G
  hgvsp: ENST00000483239.2:c.1176A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1158A>G
  hgvsp: ENST00000314756.3:c.1158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.444A>G
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu386Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

11-113220801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220801
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220801
    reference: chr 11
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1161G>A
  hgvsp: ENST00000314756.3:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1161G>A
  hgvsp: ENST00000393020.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*875G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1179G>A
  hgvsp: ENST00000483239.2:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1161G>A
  hgvsp: ENST00000529221.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.447G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1161G>A
  hgvsp: ENST00000494714.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1192G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7547
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu387Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-113220806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220806
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1166C>T
  hgvsp: ENSP00000376743.1:p.Ala389Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1184C>T
  hgvsp: ENSP00000419652.2:p.Ala395Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1166C>T
  hgvsp: ENSP00000315160.3:p.Ala389Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1166C>T
  hgvsp: ENSP00000433757.1:p.Ala389Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*880C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1166C>T
  hgvsp: ENSP00000435291.1:p.Ala389Val
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1187C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.452C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala389Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

11-113220811-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220811
    reference: chr 11
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1171G>T
  hgvsp: ENSP00000315160.3:p.Val391Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1182G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1171G>T
  hgvsp: ENSP00000376743.1:p.Val391Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1171G>T
  hgvsp: ENSP00000435291.1:p.Val391Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1171G>T
  hgvsp: ENSP00000433757.1:p.Val391Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1189G>T
  hgvsp: ENSP00000419652.2:p.Val397Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.457G>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*885G>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10204
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val391Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-113220830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220830
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.476C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*904C>T
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1190C>T
  hgvsp: ENSP00000315160.3:p.Ser397Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1190C>T
  hgvsp: ENSP00000433757.1:p.Ser397Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1190C>T
  hgvsp: ENSP00000376743.1:p.Ser397Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1208C>T
  hgvsp: ENSP00000419652.2:p.Ser403Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1190C>T
  hgvsp: ENSP00000435291.1:p.Ser397Leu
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1163C>T
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7542
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser397Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-113220831-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220831
    reference: chr 11
allele count: 49
allele frequency: 4.035844891773465e-4
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1191G>C
  hgvsp: ENST00000393020.1:c.1191G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1209G>C
  hgvsp: ENST00000483239.2:c.1209G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1191G>C
  hgvsp: ENST00000529221.1:c.1191G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1162G>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1191G>C
  hgvsp: ENST00000314756.3:c.1191G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1191G>C
  hgvsp: ENST00000494714.1:c.1191G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*905G>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.477G>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser397Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-113220831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220831
    reference: chr 11
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*905G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1191G>A
  hgvsp: ENST00000529221.1:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1209G>A
  hgvsp: ENST00000483239.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.477G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1162G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1191G>A
  hgvsp: ENST00000393020.1:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1191G>A
  hgvsp: ENST00000314756.3:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1191G>A
  hgvsp: ENST00000494714.1:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31290
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser397Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-113220845-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220845
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1205A>C
  hgvsp: ENSP00000435291.1:p.Asn402Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*919A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.491A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1205A>C
  hgvsp: ENSP00000433757.1:p.Asn402Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1223A>C
  hgvsp: ENSP00000419652.2:p.Asn408Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1148A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1205A>C
  hgvsp: ENSP00000376743.1:p.Asn402Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1205A>C
  hgvsp: ENSP00000315160.3:p.Asn402Thr
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn402Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

11-113220845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220845
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1205A>G
  hgvsp: ENSP00000315160.3:p.Asn402Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1205A>G
  hgvsp: ENSP00000435291.1:p.Asn402Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1148A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*919A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1223A>G
  hgvsp: ENSP00000419652.2:p.Asn408Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.491A>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1205A>G
  hgvsp: ENSP00000433757.1:p.Asn402Ser
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1205A>G
  hgvsp: ENSP00000376743.1:p.Asn402Ser
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn402Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

11-113220861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220861
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1132G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1221G>A
  hgvsp: ENST00000393020.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.507G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1221G>A
  hgvsp: ENST00000314756.3:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1221G>A
  hgvsp: ENST00000529221.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1239G>A
  hgvsp: ENST00000483239.2:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1221G>A
  hgvsp: ENST00000494714.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*935G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu407Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

11-113220874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220874
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220874
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1252G>A
  hgvsp: ENSP00000419652.2:p.Ala418Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1234G>A
  hgvsp: ENSP00000435291.1:p.Ala412Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1234G>A
  hgvsp: ENSP00000433757.1:p.Ala412Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1119G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.520G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1234G>A
  hgvsp: ENSP00000315160.3:p.Ala412Thr
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*948G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1234G>A
  hgvsp: ENSP00000376743.1:p.Ala412Thr
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala412Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-113220878-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220878
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220878
    reference: chr 11
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.524T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1115T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1238T>G
  hgvsp: ENSP00000435291.1:p.Leu413Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1238T>G
  hgvsp: ENSP00000315160.3:p.Leu413Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*952T>G
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1256T>G
  hgvsp: ENSP00000419652.2:p.Leu419Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1238T>G
  hgvsp: ENSP00000433757.1:p.Leu413Arg
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1238T>G
  hgvsp: ENSP00000376743.1:p.Leu413Arg
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu413Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-113220880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220880
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220880
    reference: chr 11
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1240G>A
  hgvsp: ENSP00000435291.1:p.Glu414Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1258G>A
  hgvsp: ENSP00000419652.2:p.Glu420Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1113G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*954G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.526G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1240G>A
  hgvsp: ENSP00000315160.3:p.Glu414Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1240G>A
  hgvsp: ENSP00000433757.1:p.Glu414Lys
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1240G>A
  hgvsp: ENSP00000376743.1:p.Glu414Lys
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu414Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-113220884-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220884
    reference: chr 11
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1244A>C
  hgvsp: ENSP00000435291.1:p.Glu415Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1244A>C
  hgvsp: ENSP00000433757.1:p.Glu415Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.530A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*958A>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1244A>C
  hgvsp: ENSP00000376743.1:p.Glu415Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1244A>C
  hgvsp: ENSP00000315160.3:p.Glu415Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1262A>C
  hgvsp: ENSP00000419652.2:p.Glu421Ala
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1109A>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu415Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

11-113220888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220888
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220888
    reference: chr 11
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1247+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*961+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.533+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1247+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1265+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1247+1G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1105G>A
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1247+1G>A
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1247+1G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-113220889-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113220889
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 113220889
    reference: chr 11
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000315160
  ensembl transcript: ENST00000314756
  gene symbol: TTC12
  hgvsc: ENST00000314756.3:c.1247+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433274
  ensembl transcript: ENST00000527362
  gene symbol: TTC12
  hgvsc: ENST00000527362.1:c.224-1104T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000376743
  ensembl transcript: ENST00000393020
  gene symbol: TTC12
  hgvsc: ENST00000393020.1:c.1247+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl transcript: ENST00000478125
  gene symbol: TTC12
  hgvsc: ENST00000478125.1:n.533+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000433757
  ensembl transcript: ENST00000529221
  gene symbol: TTC12
  hgvsc: ENST00000529221.1:c.1247+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000435291
  ensembl transcript: ENST00000494714
  gene symbol: TTC12
  hgvsc: ENST00000494714.1:c.1247+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000437030
  ensembl transcript: ENST00000464224
  gene symbol: TTC12
  hgvsc: ENST00000464224.1:c.*961+2T>C
  variant of: http://identifiers.org/hgnc/23700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149292
  ensembl protein: ENSP00000419652
  ensembl transcript: ENST00000483239
  gene symbol: TTC12
  hgvsc: ENST00000483239.2:c.1265+2T>C
  variant of: http://identifiers.org/hgnc/23700
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1247+2T>C
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 89
allele frequency: 8.652537429515847e-3
allele num: 10286
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

QD
type: SiteQuality
SIO_000300: 1.662e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 2.487417e6

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4898
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72762645914397e-5
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 2.485821e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
SIO_000300: 1.894e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

GenotypeQuality
all individuals: 507
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.476e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 2.901376e6

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.921e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33717
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.575991756826378e-4
allele num: 11646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 2.902891e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.161e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.414e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 242
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64628
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737317581653926e-4
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.084e0

FS
type: SiteQuality
SIO_000300: 6.786e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

DP
type: SiteQuality
SIO_000300: 2.903578e6

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545595054095827e-5
allele num: 64700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11860
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.356e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 4.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 2.907317e6

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 2790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545786186854634e-5
allele num: 64692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11824
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.054e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.698e0

FS
type: SiteQuality
SIO_000300: 1.872e0

DP
type: SiteQuality
SIO_000300: 2.908725e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.891e0

VQSLOD
type: SiteQuality
SIO_000300: -5.263e-1

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33713
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.169031462060457e-5
allele num: 64840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12176
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

QD
type: SiteQuality
SIO_000300: 1.302e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.912865e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.072e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 3491
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GenotypeQuality
all individuals: 1813
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.626545217957059e-4
allele num: 12296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 2.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 9.84e-1

DP
type: SiteQuality
SIO_000300: 2.914126e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541354542371836e-5
allele num: 64878
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12278
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 2.91499e6

QD
type: SiteQuality
SIO_000300: 1.127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.765e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.938735944164405e-4
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQ
type: SiteQuality
SIO_000300: 6.077e1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

FS
type: SiteQuality
SIO_000300: 4.021e0

QD
type: SiteQuality
SIO_000300: 1.612e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.92285e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.494004796163069e-5
allele num: 13344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.145199350311054e-4
allele num: 65262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601908065915004e-4
allele num: 11530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.487e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.932081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52151421094273e-5
allele num: 65724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 4.453e0

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

DP
type: SiteQuality
SIO_000300: 2.95035e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65774
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.81663258350375e-5
allele num: 14670
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.244e1

InbreedingCoeff
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SIO_000300: 7.2e-3

ClippingRankSum
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.892e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.073489219556635e-5
allele num: 65860
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 6.046761623219565e-4
allele num: 14884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.956699e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.429e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.641870350690754e-5
allele num: 15056
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.959278e6

BaseQRankSum
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SIO_000300: -8.149999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.402e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15056
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

FS
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
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DP
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SIO_000300: 2.959278e6

QD
type: SiteQuality
SIO_000300: 1.402e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 5.254e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 2.966933e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 2.969356e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022152376922845e-5
allele num: 66178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

DP
type: SiteQuality
SIO_000300: 2.969356e6

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509160604871571e-5
allele num: 66262
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10372
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MQRankSum
type: SiteQuality
SIO_000300: -1.255e0

DP
type: SiteQuality
SIO_000300: 2.973427e6

QD
type: SiteQuality
SIO_000300: 1.853e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.607e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.32e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.975183e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e0

MQRankSum
type: SiteQuality
SIO_000300: -2.228e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 3.207e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.017028189777069e-5
allele num: 66478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 2.983128e6

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 5.27e-1

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 10019
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GenotypeQuality
all individuals: 1572
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008514094888535e-5
allele num: 66478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.983128e6

GenotypeQuality
all individuals: 3501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.771e0

FS
type: SiteQuality
SIO_000300: 1.933e1

QD
type: SiteQuality
SIO_000300: 1.408e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

DP
type: SiteQuality
SIO_000300: 2.982764e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 9955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33701
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 2.982764e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

FS
type: SiteQuality
SIO_000300: 1.933e1

QD
type: SiteQuality
SIO_000300: 1.408e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.633e0

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 2.98258e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.128e0

QD
type: SiteQuality
SIO_000300: 1.581e1

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.85319097306479e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

DP
type: SiteQuality
SIO_000300: 2.982917e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.307e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33699
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 10016
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477051460361613e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.98255e6

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 2902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.982505e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.286e0

QD
type: SiteQuality
SIO_000300: 1.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

FS
type: SiteQuality
SIO_000300: 2.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.286e0

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

QD
type: SiteQuality
SIO_000300: 1.049e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 2.482e0

DP
type: SiteQuality
SIO_000300: 2.982505e6

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33697
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 1.5834e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 2.982556e6

VQSLOD
type: SiteQuality
SIO_000300: -2.6e0

QD
type: SiteQuality
SIO_000300: 1.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33699
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variant carriers: 12

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.023641941887746e-5
allele num: 66492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 2.982861e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33694
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511820970943873e-5
allele num: 66492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 2.982084e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33692
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.88e0

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.980905e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

GenotypeQuality
all individuals: 9878
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.68e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: -1.502e0

QD
type: SiteQuality
SIO_000300: 1.115e1

DP
type: SiteQuality
SIO_000300: 2.979859e6

FS
type: SiteQuality
SIO_000300: 1.469e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3150
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GenotypeQuality
all individuals: 1538
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 10
allele frequency: 1.106194690265487e-2
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 42
allele frequency: 4.869000695571528e-3
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1132
allele frequency: 1.090558766859345e-1
allele num: 10380
num of homozygotes: 59

South Asian
type: Population
allele count: 445
allele frequency: 2.713083770271918e-2
allele num: 16402
num of homozygotes: 11

Latino
type: Population
allele count: 56
allele frequency: 4.841777624070552e-3
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.613260666646593e-4
allele num: 66422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.864e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 3.045875e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.340000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3586
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GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219660934260276e-4
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

DP
type: SiteQuality
SIO_000300: 2.917006e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 4.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 85
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 10066
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GenotypeQuality
all individuals: 426
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GenotypeQuality
all individuals: 3386
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011776044333343e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220852154804053e-4
allele num: 16382
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

DP
type: SiteQuality
SIO_000300: 2.916767e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 3387
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GenotypeQuality
all individuals: 10087
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 2.875e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

QD
type: SiteQuality
SIO_000300: 1.038e1

DP
type: SiteQuality
SIO_000300: 2.915872e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -3.408e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.904e1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

FS
type: SiteQuality
SIO_000300: 1.162e0

QD
type: SiteQuality
SIO_000300: 1.442e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

DP
type: SiteQuality
SIO_000300: 2.907462e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.157e0

MQRankSum
type: SiteQuality
SIO_000300: -4.49e-1

DP
type: SiteQuality
SIO_000300: 2.907596e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2949
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022152376922845e-5
allele num: 66178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.898765e6

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.346e0

QD
type: SiteQuality
SIO_000300: 9.43e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.640371229698376e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.686e0

QD
type: SiteQuality
SIO_000300: 1.112e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.953e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.892356e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517174414370676e-5
allele num: 65912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 2.876863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 6.147e0

QD
type: SiteQuality
SIO_000300: 1.4e1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15114
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.354e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.122e1

DP
type: SiteQuality
SIO_000300: 2.865743e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.812917291184085e-4
allele num: 14678
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.536e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498845888665727e-4
allele num: 66718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 2.064683e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7613
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 3743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635041802980734e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.095617768718901e-4
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

DP
type: SiteQuality
SIO_000300: 2.066401e6

QD
type: SiteQuality
SIO_000300: 1.379e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

FS
type: SiteQuality
SIO_000300: 1.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1452
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 987
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

DP
type: SiteQuality
SIO_000300: 2.063451e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.581e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 986
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7578
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variant carriers: 31

GenotypeQuality
all individuals: 10192
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.882952142994426e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.224e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.913e0

FS
type: SiteQuality
SIO_000300: 1.344e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.064559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
all individuals: 1452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2470
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variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

DP
type: SiteQuality
SIO_000300: 2.062043e6

QD
type: SiteQuality
SIO_000300: 2.348e1

FS
type: SiteQuality
SIO_000300: 1.4284e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2470
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variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

QD
type: SiteQuality
SIO_000300: 1.523e1

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 2.062418e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2470
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3012
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variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.933e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.219e1

DP
type: SiteQuality
SIO_000300: 2.062104e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

DP
type: SiteQuality
SIO_000300: 2.062065e6

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31289
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.062132e6

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 2.062164e6

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
all individuals: 7553
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 10205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31290
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 48
allele frequency: 2.906976744186046e-3
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.066115e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

DP
type: SiteQuality
SIO_000300: 2.066115e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.58e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

FS
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.896e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 2.060286e6

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.060286e6

FS
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -3.896e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

FS
type: SiteQuality
SIO_000300: 1.709e0

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.174e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

DP
type: SiteQuality
SIO_000300: 2.060148e6

MQ
type: SiteQuality
SIO_000300: 5.8e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 4.81e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.993e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.059991e6

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.059625e6

FS
type: SiteQuality
SIO_000300: 2.081e0

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.422e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.858e0

DP
type: SiteQuality
SIO_000300: 2.057717e6

VQSLOD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 1.319e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7499
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.632e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.138e0

VQSLOD
type: SiteQuality
SIO_000300: -3.447e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

DP
type: SiteQuality
SIO_000300: 2.055514e6