16-89944842-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944841
    reference: chr 16
allele count: 50
allele frequency: 8.038585209003216e-2
allele num: 622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.192+4599delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.192+4599delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.192+4599delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.192+4599delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.201-3delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.193-3delT
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.268+4599delT
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: AT
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-89944842-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944840
    reference: chr 16
allele count: 50
allele frequency: 8.038585209003216e-2
allele num: 622
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 4
  allele frequency: 1.428571428571428e-1
  allele num: 28
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 13
  allele frequency: 7.471264367816093e-2
  allele num: 174
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 4.545454545454546e-2
  allele num: 22
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 32
  allele frequency: 8.247422680412371e-2
  allele num: 388
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
reference allele: ATT
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

16-89944842-ATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944839
    reference: chr 16
allele count: 22
allele frequency: 3.536977491961415e-2
allele num: 622
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 2.5e-1
  allele num: 4
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 1.149425287356322e-2
  allele num: 174
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 3.571428571428571e-2
  allele num: 28
  num of homozygotes: 0
population: African
population: Other
population: South Asian
reference allele: ATTT
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-89944886-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944886
    reference: chr 16
allele count: 1
allele frequency: 9.46431951542684e-5
allele num: 10566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.192+4619C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.192+4619C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.192+4619C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.218C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.268+4619C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.192+4619C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.210C>G
  hgvsp: ENST00000564652.1:c.210C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser70Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

16-89944929-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944929
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944929
    reference: chr 16
allele count: 3
allele frequency: 2.901353965183752e-4
allele num: 10340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.261T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.268+4662T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.192+4662T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.192+4662T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.192+4662T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.192+4662T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

16-89944944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944944
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944944
    reference: chr 16
allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.192+4677G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*37G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.276G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.192+4677G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.192+4677G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.192+4677G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.268+4677G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/16-89944945-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89944945
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89944945
    reference: chr 16
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.192+4678C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.268+4678C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.192+4678C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.192+4678C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.192+4678C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.277C>A
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/16-89949714-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949714
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949714
    reference: chr 16
allele count: 1
allele frequency: 8.430139434506248e-6
allele num: 118622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-45A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-45A>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

16-89949715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949715
    reference: chr 16
allele count: 2
allele frequency: 1.687279599102367e-5
allele num: 118534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-44C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-44C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-89949717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949717
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949717
    reference: chr 16
allele count: 1
allele frequency: 8.43340979624882e-6
allele num: 118576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-42C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-42C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-89949719-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949719
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949719
    reference: chr 16
allele count: 1
allele frequency: 8.426303549159055e-6
allele num: 118676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-40G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-40G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-89949722-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949722
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949722
    reference: chr 16
allele count: 1
allele frequency: 8.42034355001684e-6
allele num: 118760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-37A>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-37A>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

16-89949727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949727
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949727
    reference: chr 16
allele count: 18
allele frequency: 1.515559746733127e-4
allele num: 118768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-32C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-32C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

16-89949728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949728
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949728
    reference: chr 16
allele count: 3
allele frequency: 2.521728897332011e-5
allele num: 118966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-31G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-31G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-89949729-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949729
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949729
    reference: chr 16
allele count: 18
allele frequency: 1.51227462907264e-4
allele num: 119026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-30C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-30C>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

16-89949731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949731
    reference: chr 16
allele count: 6
allele frequency: 5.032037304169882e-5
allele num: 119236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-28C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-28C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-89949739-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949739
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949739
    reference: chr 16
allele count: 1
allele frequency: 8.342510094437214e-6
allele num: 119868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-20T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-20T>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-89949740-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949740
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949740
    reference: chr 16
allele count: 1
allele frequency: 8.339170752860335e-6
allele num: 119916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-19C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-19C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-89949749-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949749
    reference: chr 16
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-10G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-10G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

16-89949750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949750
    reference: chr 16
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.368-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.193-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.193-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*129-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.193-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.269-9T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.193-9T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-89949761-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949761
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949761
    reference: chr 16
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.195A>G
  hgvsp: ENSP00000456803.1:p.Ile65Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*131A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.195A>G
  hgvsp: ENSP00000454414.1:p.Ile65Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.271A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.195A>G
  hgvsp: ENSP00000263346.8:p.Ile65Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.370A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.195A>G
  hgvsp: ENSP00000457329.1:p.Ile65Met
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile65Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

16-89949765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949765
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949765
    reference: chr 16
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.275A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.199A>G
  hgvsp: ENSP00000263346.8:p.Ile67Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.199A>G
  hgvsp: ENSP00000454414.1:p.Ile67Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.374A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*135A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.199A>G
  hgvsp: ENSP00000457329.1:p.Ile67Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.199A>G
  hgvsp: ENSP00000456803.1:p.Ile67Val
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile67Val
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

16-89949770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949770
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949770
    reference: chr 16
allele count: 7
allele frequency: 5.775672865888876e-5
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.204C>T
  hgvsp: ENST00000263346.8:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.204C>T
  hgvsp: ENST00000561958.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.280C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.379C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*140C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.204C>T
  hgvsp: ENST00000568412.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.204C>T
  hgvsp: ENST00000565196.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp68Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

16-89949771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949771
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949771
    reference: chr 16
allele count: 4
allele frequency: 3.299458888742246e-5
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*141G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.205G>A
  hgvsp: ENSP00000456803.1:p.Asp69Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.281G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.205G>A
  hgvsp: ENSP00000454414.1:p.Asp69Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.205G>A
  hgvsp: ENSP00000457329.1:p.Asp69Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.205G>A
  hgvsp: ENSP00000263346.8:p.Asp69Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.380G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp69Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

16-89949782-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949782
    reference: chr 16
allele count: 6
allele frequency: 4.944946264917255e-5
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.216T>A
  hgvsp: ENSP00000454414.1:p.Asp72Glu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.216T>A
  hgvsp: ENSP00000457329.1:p.Asp72Glu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.292T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*152T>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.216T>A
  hgvsp: ENSP00000456803.1:p.Asp72Glu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.216T>A
  hgvsp: ENSP00000263346.8:p.Asp72Glu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.391T>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp72Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

16-89949783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949783
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949783
    reference: chr 16
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.217G>A
  hgvsp: ENSP00000456803.1:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.217G>A
  hgvsp: ENSP00000263346.8:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.293G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.217G>A
  hgvsp: ENSP00000457329.1:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.217G>A
  hgvsp: ENSP00000454414.1:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*153G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.392G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp73Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

16-89949783-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949783
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949783
    reference: chr 16
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.217G>C
  hgvsp: ENSP00000454414.1:p.Asp73His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.217G>C
  hgvsp: ENSP00000457329.1:p.Asp73His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.217G>C
  hgvsp: ENSP00000456803.1:p.Asp73His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.217G>C
  hgvsp: ENSP00000263346.8:p.Asp73His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*153G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.293G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.392G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45481
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp73His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

16-89949785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949785
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949785
    reference: chr 16
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.219C>T
  hgvsp: ENST00000568412.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.219C>T
  hgvsp: ENST00000565196.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.219C>T
  hgvsp: ENST00000263346.8:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.394C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.219C>T
  hgvsp: ENST00000561958.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.295C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp73Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-89949786-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949786
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949786
    reference: chr 16
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.220C>G
  hgvsp: ENSP00000456803.1:p.Pro74Ala
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.296C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*156C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.395C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.220C>G
  hgvsp: ENSP00000454414.1:p.Pro74Ala
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.220C>G
  hgvsp: ENSP00000263346.8:p.Pro74Ala
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.220C>G
  hgvsp: ENSP00000457329.1:p.Pro74Ala
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro74Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-89949791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949791
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949791
    reference: chr 16
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.301G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.225G>A
  hgvsp: ENST00000568412.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.400G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.225G>A
  hgvsp: ENST00000263346.8:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.225G>A
  hgvsp: ENST00000561958.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.225G>A
  hgvsp: ENST00000565196.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*161G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val75Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-89949792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949792
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949792
    reference: chr 16
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.226G>A
  hgvsp: ENSP00000457329.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.226G>A
  hgvsp: ENSP00000263346.8:p.Val76Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.226G>A
  hgvsp: ENSP00000456803.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.401G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.226G>A
  hgvsp: ENSP00000454414.1:p.Val76Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.302G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val76Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

16-89949797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949797
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949797
    reference: chr 16
allele count: 10
allele frequency: 8.240762105679533e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.307C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.406C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*167C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.231C>T
  hgvsp: ENST00000561958.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.231C>T
  hgvsp: ENST00000263346.8:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.231C>T
  hgvsp: ENST00000565196.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.231C>T
  hgvsp: ENST00000568412.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn77Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

16-89949798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949798
    reference: chr 16
allele count: 2
allele frequency: 1.648179585647652e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.232G>A
  hgvsp: ENSP00000456803.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.232G>A
  hgvsp: ENSP00000454414.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.232G>A
  hgvsp: ENSP00000457329.1:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*168G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.308G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.232G>A
  hgvsp: ENSP00000263346.8:p.Gly78Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.407G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Gly78Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

16-89949801-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949801
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949801
    reference: chr 16
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.235G>C
  hgvsp: ENSP00000263346.8:p.Glu79Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.410G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.235G>C
  hgvsp: ENSP00000457329.1:p.Glu79Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.235G>C
  hgvsp: ENSP00000456803.1:p.Glu79Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.311G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*171G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.235G>C
  hgvsp: ENSP00000454414.1:p.Glu79Gln
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu79Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

16-89949806-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949806
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949806
    reference: chr 16
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.240G>T
  hgvsp: ENSP00000263346.8:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*176G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.240G>T
  hgvsp: ENSP00000456803.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.240G>T
  hgvsp: ENSP00000454414.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.240G>T
  hgvsp: ENSP00000457329.1:p.Arg80Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.415G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.5G>T
  hgvsp: ENSP00000456592.1:p.Arg2Ser
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.316G>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg80Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-89949807-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949807
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949807
    reference: chr 16
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.6T>C
  hgvsp: ENSP00000456592.1:p.Ser3Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*177T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.241T>C
  hgvsp: ENSP00000454414.1:p.Ser81Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.416T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.241T>C
  hgvsp: ENSP00000457329.1:p.Ser81Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.241T>C
  hgvsp: ENSP00000456803.1:p.Ser81Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.317T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.241T>C
  hgvsp: ENSP00000263346.8:p.Ser81Pro
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser81Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

16-89949815-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949815
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949815
    reference: chr 16
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*185T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.249T>G
  hgvsp: ENSP00000263346.8:p.Cys83Trp
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.14T>G
  hgvsp: ENSP00000456592.1:p.Cys5Trp
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.249T>G
  hgvsp: ENSP00000457329.1:p.Cys83Trp
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.249T>G
  hgvsp: ENSP00000456803.1:p.Cys83Trp
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.325T>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.249T>G
  hgvsp: ENSP00000454414.1:p.Cys83Trp
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.424T>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys83Trp
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-89949817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949817
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949817
    reference: chr 16
allele count: 9
allele frequency: 7.42219070081974e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.251C>T
  hgvsp: ENSP00000263346.8:p.Ala84Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.251C>T
  hgvsp: ENSP00000454414.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.251C>T
  hgvsp: ENSP00000456803.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.426C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.251C>T
  hgvsp: ENSP00000457329.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.16C>T
  hgvsp: ENSP00000456592.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.327C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala84Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

16-89949818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949818
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949818
    reference: chr 16
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.252G>A
  hgvsp: ENST00000561958.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.252G>A
  hgvsp: ENST00000565196.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.17G>A
  hgvsp: ENST00000565404.1:c.17G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.252G>A
  hgvsp: ENST00000568412.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.427G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.328G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.252G>A
  hgvsp: ENST00000263346.8:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*188G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala84Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

16-89949818-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949818
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949818
    reference: chr 16
allele count: 4
allele frequency: 3.298751422586551e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.252G>T
  hgvsp: ENST00000263346.8:c.252G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.427G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*188G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.17G>T
  hgvsp: ENST00000565404.1:c.17G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.328G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.252G>T
  hgvsp: ENST00000561958.1:c.252G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.252G>T
  hgvsp: ENST00000565196.1:c.252G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.252G>T
  hgvsp: ENST00000568412.1:c.252G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala84Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-89949820-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949820
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949820
    reference: chr 16
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.330T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.429T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.254T>C
  hgvsp: ENSP00000457329.1:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.254T>C
  hgvsp: ENSP00000263346.8:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*190T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.19T>C
  hgvsp: ENSP00000456592.1:p.Leu7Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.254T>C
  hgvsp: ENSP00000456803.1:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.254T>C
  hgvsp: ENSP00000454414.1:p.Leu85Pro
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu85Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

16-89949821-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949821
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949821
    reference: chr 16
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.430C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.255C>G
  hgvsp: ENST00000565196.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.331C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.255C>G
  hgvsp: ENST00000561958.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.255C>G
  hgvsp: ENST00000263346.8:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.255C>G
  hgvsp: ENST00000568412.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.20C>G
  hgvsp: ENST00000565404.1:c.20C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*191C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu85Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

16-89949823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949823
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949823
    reference: chr 16
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.257C>T
  hgvsp: ENSP00000456803.1:p.Thr86Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.257C>T
  hgvsp: ENSP00000454414.1:p.Thr86Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.257C>T
  hgvsp: ENSP00000263346.8:p.Thr86Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*193C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.257C>T
  hgvsp: ENSP00000457329.1:p.Thr86Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.333C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.22C>T
  hgvsp: ENSP00000456592.1:p.Thr8Ile
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.432C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr86Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

16-89949824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949824
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949824
    reference: chr 16
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.334A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*194A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.258A>G
  hgvsp: ENST00000561958.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.258A>G
  hgvsp: ENST00000565196.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.23A>G
  hgvsp: ENST00000565404.1:c.23A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.258A>G
  hgvsp: ENST00000568412.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.433A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.258A>G
  hgvsp: ENST00000263346.8:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr86Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

16-89949827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949827
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949827
    reference: chr 16
allele count: 2
allele frequency: 1.650083329208125e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.261C>T
  hgvsp: ENST00000568412.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.261C>T
  hgvsp: ENST00000565196.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.436C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.261C>T
  hgvsp: ENST00000561958.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.26C>T
  hgvsp: ENST00000565404.1:c.26C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.261C>T
  hgvsp: ENST00000263346.8:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*197C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.337C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp87Asp
num of homozygotes: 1
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-89949830-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949830
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949830
    reference: chr 16
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.264T>C
  hgvsp: ENST00000565196.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.439T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.340T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.264T>C
  hgvsp: ENST00000568412.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.264T>C
  hgvsp: ENST00000263346.8:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.264T>C
  hgvsp: ENST00000561958.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.29T>C
  hgvsp: ENST00000565404.1:c.29T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*200T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala88Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-89949838-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949838
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949838
    reference: chr 16
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.447C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*208C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.37C>A
  hgvsp: ENSP00000456592.1:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.272C>A
  hgvsp: ENSP00000456803.1:p.Pro91Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.348C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.272C>A
  hgvsp: ENSP00000454414.1:p.Pro91Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.272C>A
  hgvsp: ENSP00000263346.8:p.Pro91Gln
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.272C>A
  hgvsp: ENSP00000457329.1:p.Pro91Gln
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45129
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro91Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-89949843-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949843
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949843
    reference: chr 16
allele count: 1
allele frequency: 8.279242283746192e-6
allele num: 120784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.42A>T
  hgvsp: ENSP00000456592.1:p.Asn15Tyr
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.452A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.277A>T
  hgvsp: ENSP00000454414.1:p.Asn93Tyr
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.353A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.277A>T
  hgvsp: ENSP00000456803.1:p.Asn93Tyr
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*213A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.277A>T
  hgvsp: ENSP00000263346.8:p.Asn93Tyr
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.277A>T
  hgvsp: ENSP00000457329.1:p.Asn93Tyr
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7935
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn93Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-89949851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949851
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949851
    reference: chr 16
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.285A>G
  hgvsp: ENST00000263346.8:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.285A>G
  hgvsp: ENST00000561958.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.50A>G
  hgvsp: ENST00000565404.1:c.50A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.285A>G
  hgvsp: ENST00000568412.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.285A>G
  hgvsp: ENST00000565196.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.361A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*221A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.460A>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly95Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-89949859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949859
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949859
    reference: chr 16
allele count: 1
allele frequency: 8.452799567216662e-6
allele num: 118304
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.293A>G
  hgvsp: ENSP00000263346.8:p.Gln98Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.468A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.369A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.58A>G
  hgvsp: ENSP00000456592.1:p.Gln20Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*229A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.293A>G
  hgvsp: ENSP00000454414.1:p.Gln98Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.293A>G
  hgvsp: ENSP00000457329.1:p.Gln98Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.293A>G
  hgvsp: ENSP00000456803.1:p.Gln98Arg
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7306
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln98Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-89949861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949861
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949861
    reference: chr 16
allele count: 6
allele frequency: 5.108469842999694e-5
allele num: 117452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.295C>T
  hgvsp: ENSP00000456803.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.295C>T
  hgvsp: ENSP00000263346.8:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.295C>T
  hgvsp: ENSP00000454414.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.60C>T
  hgvsp: ENSP00000456592.1:p.Arg21Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.470C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.295C>T
  hgvsp: ENSP00000457329.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*231C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.371C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg99Cys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

16-89949862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949862
    reference: chr 16
allele count: 3
allele frequency: 2.555279206841334e-5
allele num: 117404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.372G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.61G>A
  hgvsp: ENSP00000456592.1:p.Arg21His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.296G>A
  hgvsp: ENSP00000454414.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.296G>A
  hgvsp: ENSP00000457329.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.296G>A
  hgvsp: ENSP00000263346.8:p.Arg99His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.296G>A
  hgvsp: ENSP00000456803.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.471G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg99His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

16-89949862-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949862
    reference: chr 16
allele count: 1
allele frequency: 8.517597356137781e-6
allele num: 117404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.372G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.471G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.296G>T
  hgvsp: ENSP00000454414.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.296G>T
  hgvsp: ENSP00000263346.8:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.61G>T
  hgvsp: ENSP00000456592.1:p.Arg21Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.296G>T
  hgvsp: ENSP00000457329.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*232G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.296G>T
  hgvsp: ENSP00000456803.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg99Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-89949869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949869
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949869
    reference: chr 16
allele count: 3
allele frequency: 2.649661726519581e-5
allele num: 113222
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.303C>T
  hgvsp: ENST00000263346.8:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.478C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*239C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.303C>T
  hgvsp: ENST00000565196.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.303C>T
  hgvsp: ENST00000568412.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.303C>T
  hgvsp: ENST00000561958.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.68C>T
  hgvsp: ENST00000565404.1:c.68C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.379C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn101Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-89949871-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949871
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949871
    reference: chr 16
allele count: 3
allele frequency: 2.665624111458629e-5
allele num: 112544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.305C>G
  hgvsp: ENSP00000454414.1:p.Thr102Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.381C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.305C>G
  hgvsp: ENSP00000456803.1:p.Thr102Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.305C>G
  hgvsp: ENSP00000263346.8:p.Thr102Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.305C>G
  hgvsp: ENSP00000457329.1:p.Thr102Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*241C>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.70C>G
  hgvsp: ENSP00000456592.1:p.Thr24Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.480C>G
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6045
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr102Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

16-89949873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949873
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949873
    reference: chr 16
allele count: 2
allele frequency: 1.801509665099353e-5
allele num: 111018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.307G>A
  hgvsp: ENSP00000454414.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*243G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.72G>A
  hgvsp: ENSP00000456592.1:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.307G>A
  hgvsp: ENSP00000457329.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.307G>A
  hgvsp: ENSP00000263346.8:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.383G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.482G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.307G>A
  hgvsp: ENSP00000456803.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36043
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu103Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-89949877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949877
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949877
    reference: chr 16
allele count: 1
allele frequency: 9.288155743795512e-6
allele num: 107664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.76G>A
  hgvsp: ENSP00000456592.1:p.Ser26Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*247G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.387G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.311G>A
  hgvsp: ENSP00000456803.1:p.Ser104Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.311G>A
  hgvsp: ENSP00000457329.1:p.Ser104Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.311G>A
  hgvsp: ENSP00000454414.1:p.Ser104Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.486G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.311G>A
  hgvsp: ENSP00000263346.8:p.Ser104Asn
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12331
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser104Asn
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

16-89949883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949883
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949883
    reference: chr 16
allele count: 1
allele frequency: 9.694431518535753e-6
allele num: 103152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*253C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.82C>T
  hgvsp: ENSP00000456592.1:p.Thr28Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.393C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.317C>T
  hgvsp: ENSP00000457329.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.492C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.317C>T
  hgvsp: ENSP00000456803.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.317C>T
  hgvsp: ENSP00000263346.8:p.Thr106Met
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.317C>T
  hgvsp: ENSP00000454414.1:p.Thr106Met
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr106Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-89949885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949885
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949885
    reference: chr 16
allele count: 1
allele frequency: 9.977052778609199e-6
allele num: 100230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.395G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.494G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.319G>A
  hgvsp: ENSP00000454414.1:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.319G>A
  hgvsp: ENSP00000263346.8:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.84G>A
  hgvsp: ENSP00000456592.1:p.Asp29Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.319G>A
  hgvsp: ENSP00000456803.1:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.319G>A
  hgvsp: ENSP00000457329.1:p.Asp107Asn
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp107Asn
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

16-89949886-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949886
    reference: chr 16
allele count: 1
allele frequency: 9.983427510332847e-6
allele num: 100166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.396A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.320A>T
  hgvsp: ENSP00000454414.1:p.Asp107Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.495A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.320A>T
  hgvsp: ENSP00000263346.8:p.Asp107Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.320A>T
  hgvsp: ENSP00000457329.1:p.Asp107Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.320A>T
  hgvsp: ENSP00000456803.1:p.Asp107Val
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*256A>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.85A>T
  hgvsp: ENSP00000456592.1:p.Asp29Val
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19032
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp107Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-89949888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949888
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949888
    reference: chr 16
allele count: 1
allele frequency: 1.021533935357333e-5
allele num: 97892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.322G>A
  hgvsp: ENSP00000456803.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.87G>A
  hgvsp: ENSP00000456592.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.398G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.322G>A
  hgvsp: ENSP00000454414.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.322G>A
  hgvsp: ENSP00000457329.1:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.497G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*258G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.322G>A
  hgvsp: ENSP00000263346.8:p.Gly108Arg
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly108Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

16-89949893-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949893
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949893
    reference: chr 16
allele count: 1
allele frequency: 1.096707683534031e-5
allele num: 91182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.327T>C
  hgvsp: ENST00000565196.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.403T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.502T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.327T>C
  hgvsp: ENST00000263346.8:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*263T>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.327T>C
  hgvsp: ENST00000568412.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.327T>C
  hgvsp: ENST00000561958.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.92T>C
  hgvsp: ENST00000565404.1:c.92T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp109Asp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

16-89949899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949899
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949899
    reference: chr 16
allele count: 1
allele frequency: 1.191838291380626e-5
allele num: 83904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.409C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.333C>T
  hgvsp: ENST00000263346.8:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.98C>T
  hgvsp: ENST00000565404.1:c.98C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.333C>T
  hgvsp: ENST00000568412.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.333C>T
  hgvsp: ENST00000561958.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*269C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.333C>T
  hgvsp: ENST00000565196.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.508C>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr111Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

16-89949900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949900
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949900
    reference: chr 16
allele count: 5
allele frequency: 5.959049412437728e-5
allele num: 83906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.334G>A
  hgvsp: ENSP00000457329.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.334G>A
  hgvsp: ENSP00000456803.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.509G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*270G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.99G>A
  hgvsp: ENSP00000456592.1:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.334G>A
  hgvsp: ENSP00000263346.8:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.410G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.334G>A
  hgvsp: ENSP00000454414.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9337
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu112Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-89949911-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949911
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949911
    reference: chr 16
allele count: 1
allele frequency: 1.359323600576353e-5
allele num: 73566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.110C>A
  hgvsp: ENST00000565404.1:c.110C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.345C>A
  hgvsp: ENST00000568412.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.345C>A
  hgvsp: ENST00000561958.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*281C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.520C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.345C>A
  hgvsp: ENST00000565196.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.421C>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.345C>A
  hgvsp: ENST00000263346.8:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17767
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro115Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-89949913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949913
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949913
    reference: chr 16
allele count: 1
allele frequency: 1.396492012065691e-5
allele num: 71608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.522C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.423C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*283C>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.347C>T
  hgvsp: ENSP00000263346.8:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.347C>T
  hgvsp: ENSP00000456803.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.347C>T
  hgvsp: ENSP00000457329.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.347C>T
  hgvsp: ENSP00000454414.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.112C>T
  hgvsp: ENSP00000456592.1:p.Ser38Leu
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser116Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

16-89949914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949914
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949914
    reference: chr 16
allele count: 2
allele frequency: 2.819601872215643e-5
allele num: 70932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.424A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.113A>G
  hgvsp: ENST00000565404.1:c.113A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.348A>G
  hgvsp: ENST00000561958.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*284A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.348A>G
  hgvsp: ENST00000565196.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.348A>G
  hgvsp: ENST00000568412.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.523A>G
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.348A>G
  hgvsp: ENST00000263346.8:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser116Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

16-89949923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949923
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949923
    reference: chr 16
allele count: 7
allele frequency: 1.131441132734208e-4
allele num: 61868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.433G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.354+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.119+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*290+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.354+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.529+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.354+3G>T
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.354+3G>T
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16484
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21406
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
hgvs: c.354+3G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

16-89949926-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949926
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949926
    reference: chr 16
allele count: 1
allele frequency: 1.689189189189189e-5
allele num: 59200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*290+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.354+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.354+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.119+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.529+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.436G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.354+6G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.354+6G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21698
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30302
  bin: 2.25e1
  variant carriers: 0
hgvs: c.354+6G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

16-89949928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949928
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949928
    reference: chr 16
allele count: 1
allele frequency: 1.752418337305482e-5
allele num: 57064
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.354+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.354+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.438G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.119+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.529+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.354+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.354+8G>A
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*290+8G>A
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15538
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21776
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.5e0
  variant carriers: 0
hgvs: c.354+8G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-89949928-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949928
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949928
    reference: chr 16
allele count: 4
allele frequency: 7.009673349221926e-5
allele num: 57064
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.354+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000457329
  ensembl transcript: ENST00000568412
  gene symbol: TCF25
  hgvsc: ENST00000568412.1:c.354+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456080
  ensembl transcript: ENST00000564652
  gene symbol: TCF25
  hgvsc: ENST00000564652.1:c.*290+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000563406
  gene symbol: TCF25
  hgvsc: ENST00000563406.1:n.529+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456592
  ensembl transcript: ENST00000565404
  gene symbol: TCF25
  hgvsc: ENST00000565404.1:c.119+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000141002
  ensembl transcript: ENST00000561585
  gene symbol: TCF25
  hgvsc: ENST00000561585.1:n.438G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000454414
  ensembl transcript: ENST00000565196
  gene symbol: TCF25
  hgvsc: ENST00000565196.1:c.354+8G>C
  variant of: http://identifiers.org/hgnc/29181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000456803
  ensembl transcript: ENST00000561958
  gene symbol: TCF25
  hgvsc: ENST00000561958.1:c.354+8G>C
  variant of: http://identifiers.org/hgnc/29181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15538
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 2.75e1
  variant carriers: 0
hgvs: c.354+8G>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-89949930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89949930
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 89949930
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 55232
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000141002
  ensembl protein: ENSP00000263346
  ensembl transcript: ENST00000263346
  gene symbol: TCF25
  hgvsc: ENST00000263346.8:c.354+10T>C
  variant of: http://identifiers.org/hgnc/29181
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 6.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.0e-1
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.363636363636364e-1
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 2.857142857142857e-1
allele num: 28
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 5.412371134020619e-2
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 9.195402298850575e-2
allele num: 174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0

FS
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.691e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.831e-1

QD
type: SiteQuality
SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 1.14407e5

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.14407e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.831e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

QD
type: SiteQuality
SIO_000300: 5.92e0

MQ
type: SiteQuality
SIO_000300: 5.691e1

African
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allele count: 1
allele frequency: 4.545454545454546e-2
allele num: 22
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

South Asian
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allele count: 17
allele frequency: 4.381443298969072e-2
allele num: 388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 5.691e1

VQSLOD
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ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.831e-1

QD
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SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 1.14407e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

South Asian
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allele frequency: 1.351351351351351e-4
allele num: 7400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
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SIO_000300: 1.512e1

BaseQRankSum
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SIO_000300: -1.193e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -9.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

VQSLOD
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SIO_000300: -1.478e0

DP
type: SiteQuality
SIO_000300: 1.38928e5

MQ
type: SiteQuality
SIO_000300: 5.439e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 4.141358365543898e-4
allele num: 7244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

DP
type: SiteQuality
SIO_000300: 1.28107e5

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.456e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

FS
type: SiteQuality
SIO_000300: 5.513e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.022e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.408847562693716e-4
allele num: 7098
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.647e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.388e1

DP
type: SiteQuality
SIO_000300: 1.03901e5

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.424095699230988e-4
allele num: 7022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

FS
type: SiteQuality
SIO_000300: 7.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.645e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.841e-1

DP
type: SiteQuality
SIO_000300: 1.03249e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65974
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 1.70749e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

South Asian
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allele num: 14564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.344e0

DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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SIO_000300: 1.596e1

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 14554
num of homozygotes: 0

Latino
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allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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MQ
type: SiteQuality
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VQSLOD
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515289268721399e-5
allele num: 65994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.764e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.267e0

FS
type: SiteQuality
SIO_000300: 8.632e0

VQSLOD
type: SiteQuality
SIO_000300: -7.327e-1

DP
type: SiteQuality
SIO_000300: 1.714011e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1583
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GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14716
num of homozygotes: 0

East Asian
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allele count: 18
allele frequency: 2.080924855491329e-3
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.720351e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 236
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027550711474417e-5
allele num: 66060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.551e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.823e0

DP
type: SiteQuality
SIO_000300: 1.723707e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.573262291111649e-4
allele num: 66064
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 1.514e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.953e0

QD
type: SiteQuality
SIO_000300: 1.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 1.725859e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.816955684007707e-4
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.729287e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

FS
type: SiteQuality
SIO_000300: 3.123e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 1609
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.454944487477407e-5
allele num: 15492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.198e1

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.740585e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1412
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508614187007815e-5
allele num: 66286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 4.194e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.412e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.515e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ClippingRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.760871e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

MQRankSum
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

QD
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SIO_000300: 1.387e1

FS
type: SiteQuality
SIO_000300: 3.466e0

VQSLOD
type: SiteQuality
SIO_000300: -1.168e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000840235265874e-5
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.762469e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

FS
type: SiteQuality
SIO_000300: 1.841e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216989168796398e-4
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000750187546887e-5
allele num: 66650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.762486e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.219e0

FS
type: SiteQuality
SIO_000300: 1.954e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2754
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.997660608241857e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.221e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.32e-1

FS
type: SiteQuality
SIO_000300: 1.769e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.764096e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 1.764179e6

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2748
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.764179e6

BaseQRankSum
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SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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Other
type: Population
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Other
type: Population
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allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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FS
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DP
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VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499385252046661e-5
allele num: 66694
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European (Finnish)
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Latino
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African
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Other
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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Other
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South Asian
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allele frequency: 6.056935190793458e-5
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

DP
type: SiteQuality
SIO_000300: 1.764117e6

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

FS
type: SiteQuality
SIO_000300: 5.513e0

BaseQRankSum
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SIO_000300: -5.736e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.425e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.934812760055479e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.353e0

ClippingRankSum
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SIO_000300: -1.372e0

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.764506e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

MQRankSum
type: SiteQuality
SIO_000300: -1.21e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 8.6e-1

DP
type: SiteQuality
SIO_000300: 1.764152e6

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.763798e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.156e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.093e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 2.062e0

DP
type: SiteQuality
SIO_000300: 1.763538e6

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -6.224e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.824e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.199e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.02e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele num: 906
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8652
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

African
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allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Other
type: Population
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Latino
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allele count: 7
allele frequency: 6.053268765133172e-4
allele num: 11564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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allele num: 16508
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
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allele num: 8650
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.501530520376928e-5
allele num: 66644
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

BaseQRankSum
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SIO_000300: -1.888e0

QD
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SIO_000300: 1.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.762555e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.762226e6

VQSLOD
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SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

BaseQRankSum
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SIO_000300: -1.63e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

DP
type: SiteQuality
SIO_000300: 1.761933e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 5.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.715e0

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.761816e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -2.421e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 6.68e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

FS
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

East Asian
type: Population
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 1.159e0

DP
type: SiteQuality
SIO_000300: 1.737438e6

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 3054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.197322756569162e-5
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.697131e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 3.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.351e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.502e1

GenotypeQuality
all individuals: 7096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64790
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.741114852225963e-4
allele num: 16038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.282e1

DP
type: SiteQuality
SIO_000300: 1.679351e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 1.303e0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.08842150776738e-5
allele num: 64758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.578e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 6.373e0

DP
type: SiteQuality
SIO_000300: 1.676812e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.757e0

GenotypeQuality
all individuals: 41738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 7051
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variant carriers: 0

GenotypeQuality
all individuals: 1331
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1184
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.757e0

QD
type: SiteQuality
SIO_000300: 1.578e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 6.373e0

DP
type: SiteQuality
SIO_000300: 1.676812e6

GenotypeQuality
all individuals: 7737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 450
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GenotypeQuality
all individuals: 2668
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 37800
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variant carriers: 0

GenotypeQuality
all individuals: 6148
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variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 331
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.79570305006714e-5
allele num: 62556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: -2.462e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

DP
type: SiteQuality
SIO_000300: 1.592369e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.81e-1

GenotypeQuality
all individuals: 8383
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variant carriers: 0

GenotypeQuality
all individuals: 2668
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variant carriers: 3

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 305
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GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 240
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GenotypeQuality
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GenotypeQuality
all individuals: 37440
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.239771881973717e-4
allele num: 8066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62228
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.289324394017535e-4
allele num: 15512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

FS
type: SiteQuality
SIO_000300: 6.139e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.578201e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.434e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9816
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15366
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.994415636218588e-4
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.546402e6

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.503e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12704
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GenotypeQuality
all individuals: 181
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.677120719149364e-5
allele num: 59626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.478147e6

QD
type: SiteQuality
SIO_000300: 1.069e1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 153
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1550
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GenotypeQuality
all individuals: 869
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GenotypeQuality
all individuals: 793
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GenotypeQuality
all individuals: 482
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.378169790518192e-4
allele num: 7256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57170
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 1.386455e6

QD
type: SiteQuality
SIO_000300: 1.161e1

FS
type: SiteQuality
SIO_000300: 6.031e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.801801801801802e-5
allele num: 55500
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55490
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.23e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.461988304093567e-4
allele num: 6840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14124
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.292771e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.975035550639912e-5
allele num: 50632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.771e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 8.403e0

VQSLOD
type: SiteQuality
SIO_000300: -1.324e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.290556485176127e-5
allele num: 46614
num of homozygotes: 0

East Asian
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allele frequency: 5.336179295624333e-4
allele num: 5622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 12690
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 8.500510030601836e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40760
num of homozygotes: 0

Latino
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.64334085778781e-4
allele num: 3544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.36e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 9.43393e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7888
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30793
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 1.569037656903766e-3
allele num: 3824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34212
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.049180327868853e-3
allele num: 488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.044e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 8.71533e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

GenotypeQuality
all individuals: 8994
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.76243093922652e-4
allele num: 3620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 8.4946e5

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29798
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.188165529554294e-5
allele num: 31366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 8.3587e5

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: -1.569e0

FS
type: SiteQuality
SIO_000300: 1.2323e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 9805
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2640
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.564496588662884e-5
allele num: 31366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: -1.569e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2323e1

DP
type: SiteQuality
SIO_000300: 8.3587e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1