15-49882130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882130
    reference: chr 15
allele count: 11
allele frequency: 9.131358746181431e-5
allele num: 120464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.180T>C
  hgvsp: ENST00000558594.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.180T>C
  hgvsp: ENST00000559905.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.180T>C
  hgvsp: ENST00000561064.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.11T>C
  hgvsp: ENST00000558579.1:c.11T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.180T>C
  hgvsp: ENST00000299338.6:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.444T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.180T>C
  hgvsp: ENST00000560246.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.180T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1850T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.513T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp60Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

15-49882131-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882131
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882131
    reference: chr 15
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.10A>T
  hgvsp: ENSP00000453787.1:p.Asp4Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1851A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.179A>T
  hgvsp: ENSP00000453379.1:p.Asp60Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.179A>T
  hgvsp: ENSP00000453028.1:p.Asp60Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.443A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.179A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.179A>T
  hgvsp: ENSP00000454081.1:p.Asp60Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.179A>T
  hgvsp: ENSP00000452616.1:p.Asp60Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.179A>T
  hgvsp: ENSP00000299338.6:p.Asp60Val
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.512A>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp60Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-49882131-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882131
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882131
    reference: chr 15
allele count: 12
allele frequency: 9.961813049975096e-5
allele num: 120460
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.179A>C
  hgvsp: ENSP00000299338.6:p.Asp60Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.179A>C
  hgvsp: ENSP00000453028.1:p.Asp60Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.179A>C
  hgvsp: ENSP00000452616.1:p.Asp60Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.179A>C
  hgvsp: ENSP00000453379.1:p.Asp60Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.179A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.179A>C
  hgvsp: ENSP00000454081.1:p.Asp60Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1851A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.443A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.10A>C
  hgvsp: ENSP00000453787.1:p.Asp4Ala
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.512A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp60Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-49882132-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882132
    reference: chr 15
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.442G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.178G>C
  hgvsp: ENSP00000454081.1:p.Asp60His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.178G>C
  hgvsp: ENSP00000453028.1:p.Asp60His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.9G>C
  hgvsp: ENSP00000453787.1:p.Asp4His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.511G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.178G>C
  hgvsp: ENSP00000453379.1:p.Asp60His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.178G>C
  hgvsp: ENSP00000452616.1:p.Asp60His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.178G>C
  hgvsp: ENSP00000299338.6:p.Asp60His
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1852G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.178G>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp60His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-49882132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882132
    reference: chr 15
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.178G>A
  hgvsp: ENSP00000454081.1:p.Asp60Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.511G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.178G>A
  hgvsp: ENSP00000452616.1:p.Asp60Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.178G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.178G>A
  hgvsp: ENSP00000453379.1:p.Asp60Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.178G>A
  hgvsp: ENSP00000453028.1:p.Asp60Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.178G>A
  hgvsp: ENSP00000299338.6:p.Asp60Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.442G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1852G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.9G>A
  hgvsp: ENSP00000453787.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp60Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

15-49882135-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882135
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882135
    reference: chr 15
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1855G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.175G>C
  hgvsp: ENSP00000299338.6:p.Glu59Gln
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.6G>C
  hgvsp: ENSP00000453787.1:p.Glu3Gln
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.175G>C
  hgvsp: ENSP00000452616.1:p.Glu59Gln
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.175G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.175G>C
  hgvsp: ENSP00000453379.1:p.Glu59Gln
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.439G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.175G>C
  hgvsp: ENSP00000453028.1:p.Glu59Gln
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.508G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.175G>C
  hgvsp: ENSP00000454081.1:p.Glu59Gln
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50813
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu59Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum

15-49882136-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882136
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882136
    reference: chr 15
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1856A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.174A>T
  hgvsp: ENSP00000452616.1:p.Lys58Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.174A>T
  hgvsp: ENSP00000453379.1:p.Lys58Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.174A>T
  hgvsp: ENSP00000453028.1:p.Lys58Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.5A>T
  hgvsp: ENSP00000453787.1:p.Lys2Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.507A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.174A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.174A>T
  hgvsp: ENSP00000454081.1:p.Lys58Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.438A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.174A>T
  hgvsp: ENSP00000299338.6:p.Lys58Asn
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42661
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys58Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-49882137-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882137
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882137
    reference: chr 15
allele count: 2
allele frequency: 1.661626399920242e-5
allele num: 120364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.173A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.173A>G
  hgvsp: ENSP00000453028.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.506A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.437A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453787
  ensembl transcript: ENST00000558579
  gene symbol: FAM227B
  hgvsc: ENST00000558579.1:c.4A>G
  hgvsp: ENSP00000453787.1:p.Lys2Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.173A>G
  hgvsp: ENSP00000452616.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.173A>G
  hgvsp: ENSP00000299338.6:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.173A>G
  hgvsp: ENSP00000454081.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.173A>G
  hgvsp: ENSP00000453379.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1857A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys58Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-49882142-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882142
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882142
    reference: chr 15
allele count: 1
allele frequency: 8.313242996092776e-6
allele num: 120290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.168A>G
  hgvsp: ENST00000560246.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.168A>G
  hgvsp: ENST00000561064.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.168A>G
  hgvsp: ENST00000559905.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.501A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.432A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.168A>G
  hgvsp: ENST00000299338.6:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.168A>G
  hgvsp: ENST00000558594.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.168A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1862A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys56Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

15-49882157-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882157
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882157
    reference: chr 15
allele count: 5
allele frequency: 4.170420044706903e-5
allele num: 119892
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.153A>C
  hgvsp: ENST00000299338.6:c.153A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.153A>C
  hgvsp: ENST00000558594.1:c.153A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1877A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.153A>C
  hgvsp: ENST00000559905.1:c.153A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.153A>C
  hgvsp: ENST00000561064.1:c.153A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.153A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.486A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.153A>C
  hgvsp: ENST00000560246.1:c.153A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.417A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser51Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

15-49882157-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882157
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882157
    reference: chr 15
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.486A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.153A>T
  hgvsp: ENST00000299338.6:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.153A>T
  hgvsp: ENST00000558594.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1877A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.417A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.153A>T
  hgvsp: ENST00000559905.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.153A>T
  hgvsp: ENST00000561064.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.153A>T
  hgvsp: ENST00000560246.1:c.153A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.153A>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser51Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-49882170-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882170
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882170
    reference: chr 15
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.140A>G
  hgvsp: ENSP00000452616.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.140A>G
  hgvsp: ENSP00000299338.6:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.473A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.140A>G
  hgvsp: ENSP00000454081.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.404A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.140A>G
  hgvsp: ENSP00000453379.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1890A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.140A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.140A>G
  hgvsp: ENSP00000453028.1:p.Asp47Gly
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp47Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

15-49882171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882171
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882171
    reference: chr 15
allele count: 2
allele frequency: 1.673976363453748e-5
allele num: 119476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.139G>A
  hgvsp: ENSP00000452616.1:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.139G>A
  hgvsp: ENSP00000453379.1:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.403G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1891G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.139G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.139G>A
  hgvsp: ENSP00000299338.6:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.139G>A
  hgvsp: ENSP00000453028.1:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.139G>A
  hgvsp: ENSP00000454081.1:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.472G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp47Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-49882183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882183
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882183
    reference: chr 15
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.127C>T
  hgvsp: ENSP00000453028.1:p.His43Tyr
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.127C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.127C>T
  hgvsp: ENSP00000452616.1:p.His43Tyr
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.391C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.460C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.127C>T
  hgvsp: ENSP00000299338.6:p.His43Tyr
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1903C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.127C>T
  hgvsp: ENSP00000453379.1:p.His43Tyr
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.127C>T
  hgvsp: ENSP00000454081.1:p.His43Tyr
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His43Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

15-49882192-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882192
    reference: chr 15
allele count: 1
allele frequency: 8.419209267865562e-6
allele num: 118776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.118A>G
  hgvsp: ENSP00000453379.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.118A>G
  hgvsp: ENSP00000299338.6:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.118A>G
  hgvsp: ENSP00000452616.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.118A>G
  hgvsp: ENSP00000453028.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1912A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.451A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.118A>G
  hgvsp: ENSP00000454081.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.382A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.118A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg40Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

15-49882199-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882199
    reference: chr 15
allele count: 1
allele frequency: 8.456087537418188e-6
allele num: 118258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.111T>C
  hgvsp: ENST00000561064.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.111T>C
  hgvsp: ENST00000560246.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.111T>C
  hgvsp: ENST00000299338.6:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.111T>C
  hgvsp: ENST00000559905.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.111T>C
  hgvsp: ENST00000558594.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.444T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1919T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.375T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.111T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr37Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

15-49882207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882207
    reference: chr 15
allele count: 1
allele frequency: 8.487235198261813e-6
allele num: 117824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1927C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-3C>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 2.25e1
  variant carriers: 0
hgvs: c.106-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/15-49882208-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882208
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882208
    reference: chr 15
allele count: 2
allele frequency: 1.698802344347235e-5
allele num: 117730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1928G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-4G>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
hgvs: c.106-4G>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

15-49882215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882215
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882215
    reference: chr 15
allele count: 2
allele frequency: 1.709372489359156e-5
allele num: 117002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1935G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-11G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

15-49882216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882216
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882216
    reference: chr 15
allele count: 7
allele frequency: 5.998389004096043e-5
allele num: 116698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1936C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-12C>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-49882217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882217
    reference: chr 15
allele count: 47
allele frequency: 4.027282698108034e-4
allele num: 116704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1937A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-13A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-13A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39023
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-49882217-TGAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882213
    reference: chr 15
allele count: 1
allele frequency: 8.568686591719221e-6
allele num: 116704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1941_106-1938delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-17_370-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-17_439-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-17_106-14delTTTC
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: TGAAA
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-49882220-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882218
    reference: chr 15
allele count: 1
allele frequency: 8.611780916293489e-6
allele num: 116120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-18_370-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1942_106-1941delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-18_439-17delCT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-18_106-17delCT
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44212
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: AAG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-49882228-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882228
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882228
    reference: chr 15
allele count: 4
allele frequency: 3.48754076063264e-5
allele num: 114694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1948T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-24T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-24T>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32140
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-49882234-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882234
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882234
    reference: chr 15
allele count: 699
allele frequency: 6.142355008787346e-3
allele num: 113800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1954G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-30G>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 27896
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 2
num of homozygotes: 24
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-49882235-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882235
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882235
    reference: chr 15
allele count: 2
allele frequency: 1.763450720369619e-5
allele num: 113414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1955A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-31A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-49882236-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882236
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882236
    reference: chr 15
allele count: 1
allele frequency: 8.820986892013479e-6
allele num: 113366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1956A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-32A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7618
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-49882239-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882239
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882239
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 113050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1959C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-35C>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7737
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

15-49882243-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49882243
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49882243
    reference: chr 15
allele count: 20
allele frequency: 1.783516738304589e-4
allele num: 112138
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.370-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.106-1963A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.439-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.106-39A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20872
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

15-49903363-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903363
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903363
    reference: chr 15
allele count: 1
allele frequency: 8.43340979624882e-6
allele num: 118576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+49C>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-49903364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903364
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903364
    reference: chr 15
allele count: 1
allele frequency: 8.427865895797866e-6
allele num: 118654
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+48T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-49903366-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903366
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903366
    reference: chr 15
allele count: 1
allele frequency: 8.423322495325057e-6
allele num: 118718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+46T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+46T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-49903367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903367
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903367
    reference: chr 15
allele count: 2
allele frequency: 1.684409109284463e-5
allele num: 118736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+45A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+45A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-49903371-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903371
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903371
    reference: chr 15
allele count: 2
allele frequency: 1.685289111347052e-5
allele num: 118674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+41T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+41T>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/15-49903373-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903373
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903373
    reference: chr 15
allele count: 1
allele frequency: 8.418925745074929e-6
allele num: 118780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+39T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+39T>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16689
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-49903378-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903378
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903378
    reference: chr 15
allele count: 1
allele frequency: 8.412693071305987e-6
allele num: 118868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+34A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

15-49903379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903379
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903379
    reference: chr 15
allele count: 1
allele frequency: 8.412693071305987e-6
allele num: 118868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+33C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+33C>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17064
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-49903380-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903380
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903380
    reference: chr 15
allele count: 18
allele frequency: 1.513673517440883e-4
allele num: 118916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+32A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+32A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17148
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16571
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

15-49903386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903386
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903386
    reference: chr 15
allele count: 4
allele frequency: 3.360045696621474e-5
allele num: 119046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+26G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17660
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

15-49903390-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903390
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903390
    reference: chr 15
allele count: 1
allele frequency: 8.387150884844418e-6
allele num: 119230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+22A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+22A>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7571
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

15-49903406-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903406
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903406
    reference: chr 15
allele count: 3
allele frequency: 2.506475060573147e-5
allele num: 119690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+6T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+6T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: c.105+6T>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

15-49903411-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903411
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903411
    reference: chr 15
allele count: 1
allele frequency: 8.350172848577966e-6
allele num: 119758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.375+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.369+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.105+1G>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 2.25e1
  variant carriers: 0
hgvs: c.105+1G>C
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

15-49903415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903415
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903415
    reference: chr 15
allele count: 2
allele frequency: 1.669114701562291e-5
allele num: 119824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.102T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.372T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.366T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.102T>C
  hgvsp: ENST00000560246.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.102T>C
  hgvsp: ENST00000558594.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.102T>C
  hgvsp: ENST00000561064.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.102T>C
  hgvsp: ENST00000561116.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.102T>C
  hgvsp: ENST00000299338.6:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.102T>C
  hgvsp: ENST00000559905.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn34Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

15-49903419-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903419
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903420
    reference: chr 15
allele count: 1
allele frequency: 8.343345347750633e-6
allele num: 119856
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.97dupC
  hgvsp: ENSP00000453379.1:p.Gln33ProfsTer13
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.97dupC
  hgvsp: ENSP00000452616.1:p.Gln33ProfsTer13
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.361dupC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.97dupC
  hgvsp: ENSP00000453028.1:p.Gln33ProfsTer13
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.97dupC
  hgvsp: ENSP00000453748.1:p.Gln33ProfsTer82
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.97dupC
  hgvsp: ENSP00000299338.6:p.Gln33ProfsTer13
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.367dupC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.97dupC
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.97dupC
  hgvsp: ENSP00000454081.1:p.Gln33ProfsTer13
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln33ProfsTer13
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

15-49903424-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903425
    reference: chr 15
allele count: 3
allele frequency: 2.502627759147104e-5
allele num: 119874
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.92dupA
  hgvsp: ENSP00000453748.1:p.Phe32ValfsTer83
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.92dupA
  hgvsp: ENSP00000453028.1:p.Phe32ValfsTer14
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.92dupA
  hgvsp: ENSP00000452616.1:p.Phe32ValfsTer14
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.92dupA
  hgvsp: ENSP00000299338.6:p.Phe32ValfsTer14
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.92dupA
  hgvsp: ENSP00000453379.1:p.Phe32ValfsTer14
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.356dupA
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.362dupA
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.92dupA
  hgvsp: ENSP00000454081.1:p.Phe32ValfsTer14
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.92dupA
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6288
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe32ValfsTer14
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-49903427-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903427
    reference: chr 15
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.360A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.354A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.90A>T
  hgvsp: ENSP00000454081.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.90A>T
  hgvsp: ENSP00000453028.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.90A>T
  hgvsp: ENSP00000453379.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.90A>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.90A>T
  hgvsp: ENSP00000299338.6:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.90A>T
  hgvsp: ENSP00000452616.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.90A>T
  hgvsp: ENSP00000453748.1:p.Leu30Phe
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu30Phe
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-49903427-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903427
    reference: chr 15
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.90A>G
  hgvsp: ENST00000561116.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.90A>G
  hgvsp: ENST00000559905.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.90A>G
  hgvsp: ENST00000299338.6:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.354A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.360A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.90A>G
  hgvsp: ENST00000561064.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.90A>G
  hgvsp: ENST00000560246.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.90A>G
  hgvsp: ENST00000558594.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.90A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu30Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

15-49903430-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903430
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903430
    reference: chr 15
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.87C>G
  hgvsp: ENSP00000299338.6:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.87C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.87C>G
  hgvsp: ENSP00000453028.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.357C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.351C>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.87C>G
  hgvsp: ENSP00000453379.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.87C>G
  hgvsp: ENSP00000453748.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.87C>G
  hgvsp: ENSP00000452616.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.87C>G
  hgvsp: ENSP00000454081.1:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18785
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7684
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe29Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

15-49903450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903450
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903450
    reference: chr 15
allele count: 14
allele frequency: 1.170529413731982e-4
allele num: 119604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.67C>T
  hgvsp: ENSP00000452616.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.67C>T
  hgvsp: ENSP00000453748.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.67C>T
  hgvsp: ENSP00000453379.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.67C>T
  hgvsp: ENSP00000453028.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.67C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.67C>T
  hgvsp: ENSP00000299338.6:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.331C>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.67C>T
  hgvsp: ENSP00000454081.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.337C>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18678
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro23Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

15-49903464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903464
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903464
    reference: chr 15
allele count: 1
allele frequency: 8.391373667869429e-6
allele num: 119170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.53A>G
  hgvsp: ENSP00000453028.1:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.53A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.53A>G
  hgvsp: ENSP00000453379.1:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.53A>G
  hgvsp: ENSP00000452616.1:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.53A>G
  hgvsp: ENSP00000454081.1:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.53A>G
  hgvsp: ENSP00000299338.6:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.317A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.53A>G
  hgvsp: ENSP00000453748.1:p.Lys18Arg
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.323A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys18Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

15-49903471-AAAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903471
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903467
    reference: chr 15
allele count: 1
allele frequency: 8.408448809363649e-6
allele num: 118928
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-10_322-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-10_52-7delACTT
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-10_316-7delACTT
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: c.52-10_52-7delACTT
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: AAAGT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-49903480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903480
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903480
    reference: chr 15
allele count: 2
allele frequency: 1.688476150274377e-5
allele num: 118450
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-15A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6281
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-49903492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903492
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903492
    reference: chr 15
allele count: 5
allele frequency: 4.234345624227232e-5
allele num: 118082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-27T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11640
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

15-49903501-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903501
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903501
    reference: chr 15
allele count: 1
allele frequency: 8.500799075113061e-6
allele num: 117636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-36T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-49903503-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903503
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903503
    reference: chr 15
allele count: 1
allele frequency: 8.525730655117144e-6
allele num: 117292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-38G>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-38G>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-49903509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903509
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903509
    reference: chr 15
allele count: 65
allele frequency: 5.579303359598977e-4
allele num: 116502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-44T>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6307
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5973
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-49903512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903512
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903512
    reference: chr 15
allele count: 1
allele frequency: 8.662808829134758e-6
allele num: 115436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-47G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-49903516-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903516
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903516
    reference: chr 15
allele count: 1
allele frequency: 8.836420189452849e-6
allele num: 113168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-51A>C
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

15-49903517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49903517
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49903517
    reference: chr 15
allele count: 1
allele frequency: 8.864619530529749e-6
allele num: 112808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.316-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.322-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.52-52G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6248
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-49907270-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907270
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907270
    reference: chr 15
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.288C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+48C>A
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-49907275-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907275
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907275
    reference: chr 15
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.283T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+43T>A
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25069
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

15-49907276-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907276
    reference: chr 15
allele count: 5
allele frequency: 4.119837843182493e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.282A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+42A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+42A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25068
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-49907279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907279
    reference: chr 15
allele count: 5
allele frequency: 4.120177332432388e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.279G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+39G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+39G>A
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25067
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55901
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-49907280-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907280
    reference: chr 15
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.278G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+38G>T
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25064
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

15-49907282-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907282
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907282
    reference: chr 15
allele count: 10
allele frequency: 8.239539904091755e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.276A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+36A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+36A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25064
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

15-49907283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907283
    reference: chr 15
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.275A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+35A>G
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-49907292-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907292
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907292
    reference: chr 15
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.266T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+26T>G
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+26T>G
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25061
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-49907305-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907305
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907305
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.253C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+13C>A
  variant of: http://identifiers.org/hgnc/26543
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25059
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/15-49907313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907313
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907313
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000557892
  gene symbol: FAM227B
  hgvsc: ENST00000557892.1:n.245G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558615
  gene symbol: FAM227B
  hgvsc: ENST00000558615.1:n.315+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51+5G>T
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25059
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: c.51+5G>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-49907318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49907318
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49907318
    reference: chr 15
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453748
  ensembl transcript: ENST00000561116
  gene symbol: FAM227B
  hgvsc: ENST00000561116.1:c.51G>A
  hgvsp: ENST00000561116.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000561319
  gene symbol: FAM227B
  hgvsc: ENST00000561319.1:n.51G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl transcript: ENST00000558862
  gene symbol: FAM227B
  hgvsc: ENST00000558862.1:n.321G>A
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000454081
  ensembl transcript: ENST00000560246
  gene symbol: FAM227B
  hgvsc: ENST00000560246.1:c.51G>A
  hgvsp: ENST00000560246.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000452616
  ensembl transcript: ENST00000558594
  gene symbol: FAM227B
  hgvsc: ENST00000558594.1:c.51G>A
  hgvsp: ENST00000558594.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453028
  ensembl transcript: ENST00000561064
  gene symbol: FAM227B
  hgvsc: ENST00000561064.1:c.51G>A
  hgvsp: ENST00000561064.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000453379
  ensembl transcript: ENST00000559905
  gene symbol: FAM227B
  hgvsc: ENST00000559905.1:c.51G>A
  hgvsp: ENST00000559905.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166262
  ensembl protein: ENSP00000299338
  ensembl transcript: ENST00000299338
  gene symbol: FAM227B
  hgvsc: ENST00000299338.6:c.51G>A
  hgvsp: ENST00000299338.6:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26543
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
hgvs: c.51G>A
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.27344292660338e-3
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

FS
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.454952e6

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

DP
type: SiteQuality
SIO_000300: 1.454972e6

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
all individuals: 1244
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.571168988491823e-4
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054947704735208e-4
allele num: 66354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 1.454972e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

GenotypeQuality
all individuals: 50876
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454572e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

DP
type: SiteQuality
SIO_000300: 1.454572e6

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.283e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.453901e6

VQSLOD
type: SiteQuality
SIO_000300: -2.924e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.002e1

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.013171225937183e-4
allele num: 9870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

DP
type: SiteQuality
SIO_000300: 1.4536e6

QD
type: SiteQuality
SIO_000300: 8.81e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 50753
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GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 4.121e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.453677e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.016260162601626e-4
allele num: 9840
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.668e0

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.847e1

QD
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DP
type: SiteQuality
SIO_000300: 1.453308e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
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SIO_000300: -2.375e0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.572774361615121e-5
allele num: 66026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.585e0

DP
type: SiteQuality
SIO_000300: 1.448748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
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SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.069e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 2.585e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.448748e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.59e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e-1

FS
type: SiteQuality
SIO_000300: 5.579e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.442801e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65778
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 7.09e0

DP
type: SiteQuality
SIO_000300: 1.442737e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.057753331922996e-4
allele num: 9454
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
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MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16494
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531299767242435e-5
allele num: 65304
num of homozygotes: 0

Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

FS
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540072691431036e-5
allele num: 64932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.423864e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.752e0

MQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 1.582e1

FS
type: SiteQuality
SIO_000300: 3.367e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 1015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547364837681428e-5
allele num: 64626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

FS
type: SiteQuality
SIO_000300: 1.437e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.416875e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

QD
type: SiteQuality
SIO_000300: 1.443e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333722287047841e-4
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -1.016e0

FS
type: SiteQuality
SIO_000300: 8.289999999999999e0

DP
type: SiteQuality
SIO_000300: 1.415347e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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GenotypeQuality
all individuals: 46919
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.12256049960968e-5
allele num: 64050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 1.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

DP
type: SiteQuality
SIO_000300: 1.396069e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 924
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.26605677047434e-5
allele num: 63836
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21921482565228e-4
allele num: 16404
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 2.65e0

DP
type: SiteQuality
SIO_000300: 1.387321e6

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.361002349256069e-4
allele num: 63850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.388172e6

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566170712607674e-5
allele num: 63850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

DP
type: SiteQuality
SIO_000300: 1.388172e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576193178235924e-5
allele num: 63444
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.402048655569782e-5
allele num: 62480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.299721e6

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1276
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 621
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7264
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3245
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2752
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2480
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32188
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 837
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1856
bin: 9.75e1
variant carriers: 672

African
type: Population
allele count: 657
allele frequency: 7.477805599817892e-2
allele num: 8786
num of homozygotes: 24

Other
type: Population
allele count: 5
allele frequency: 5.707762557077625e-3
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230163611760364e-4
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616344475334583e-5
allele num: 61868
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 3.041144901610018e-3
allele num: 11180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e0

QD
type: SiteQuality
SIO_000300: 1.461e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

DP
type: SiteQuality
SIO_000300: 1.26416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 999
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.24454105966711e-5
allele num: 61642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.45e-1

DP
type: SiteQuality
SIO_000300: 1.234469e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.777e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 3.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

GenotypeQuality
all individuals: 1316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623007757977083e-5
allele num: 61614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

FS
type: SiteQuality
SIO_000300: 3.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 1.47e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.233915e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

GenotypeQuality
all individuals: 4129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1323
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.215569e6

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 407
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5335
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 2.086714583816369e-3
allele num: 8626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.804402742692169e-4
allele num: 11084
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.188869e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.602e1

GenotypeQuality
all individuals: 2378
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 978
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.241e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.839639e6

GenotypeQuality
all individuals: 2222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531393568147014e-5
allele num: 65300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 1.984e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.412e0

VQSLOD
type: SiteQuality
SIO_000300: -1.045e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 1.840432e6

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7431
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.44e-1

QD
type: SiteQuality
SIO_000300: 1.93e1

VQSLOD
type: SiteQuality
SIO_000300: -1.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.84417e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 1730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6295
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27650
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061005846521167e-5
allele num: 65338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.845837e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 2178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6294
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65308
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.019386106623587e-4
allele num: 9904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.401e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 1.853766e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 29954
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variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.009081735620585e-4
allele num: 9910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 6.365e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.176e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.858987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.177415369409439e-5
allele num: 16188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 1.873087e6

QD
type: SiteQuality
SIO_000300: 1.241e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 32600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528677999266235e-5
allele num: 65416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.907e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 6.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.688e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.04e1

DP
type: SiteQuality
SIO_000300: 1.876115e6

GenotypeQuality
all individuals: 594
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1705
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 7.75e1
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GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 1.976744186046511e-3
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65440
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

DP
type: SiteQuality
SIO_000300: 1.878422e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

QD
type: SiteQuality
SIO_000300: 1.373e1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7523
bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.106683765381209e-5
allele num: 65502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.801e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 1.504e0

DP
type: SiteQuality
SIO_000300: 1.893496e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.683e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.787e0

DP
type: SiteQuality
SIO_000300: 1.899943e6

QD
type: SiteQuality
SIO_000300: 1.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.632502632502633e-4
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.198e1

FS
type: SiteQuality
SIO_000300: 1.431e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

DP
type: SiteQuality
SIO_000300: 1.913939e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 1694
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519018106695832e-5
allele num: 65832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.916326e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 1.0055e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.994e0

QD
type: SiteQuality
SIO_000300: 5.03e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036560184622859e-5
allele num: 65864
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.35e-1

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.917608e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.071e1

InbreedingCoeff
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SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517819197377208e-5
allele num: 65884
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

FS
type: SiteQuality
SIO_000300: 2.304e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
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SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.546e1

MQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

DP
type: SiteQuality
SIO_000300: 1.918431e6

MQ
type: SiteQuality
SIO_000300: 6.024e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.552213893356803e-5
allele num: 65902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.918969e6

MQ
type: SiteQuality
SIO_000300: 5.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.086e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

FS
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.407e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.049e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.918564e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

ReadPosRankSum
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SIO_000300: 1.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 14
allele frequency: 2.130055077138423e-4
allele num: 65726
num of homozygotes: 0

Latino
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.527417137620284e-5
allele num: 65470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

QD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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SIO_000300: 6.608e0

VQSLOD
type: SiteQuality
SIO_000300: -2.445e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.121449559255632e-5
allele num: 16336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: 1.5e-3

MQRankSum
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SIO_000300: 4.62e-1

BaseQRankSum
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QD
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SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 5.723e1

FS
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SIO_000300: 1.476e0

DP
type: SiteQuality
SIO_000300: 1.893873e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073518564052127e-5
allele num: 65072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.629e0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.752e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.865443e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 4
allele frequency: 4.679457182966776e-4
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012555690562981e-4
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64878
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.82682e6

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 1.008e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.928571428571429e-5
allele num: 11200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.24e0

MQ
type: SiteQuality
SIO_000300: 5.452e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 1.770068e6

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63950
num of homozygotes: 0

East Asian
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allele count: 63
allele frequency: 7.441530829199149e-3
allele num: 8466
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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South Asian
type: Population
allele count: 1
allele frequency: 6.219679064560268e-5
allele num: 16078
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Latino
type: Population
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allele frequency: 9.007386056566384e-5
allele num: 11102
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.579978512292233e-5
allele num: 63292
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Latino
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European (Finnish)
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East Asian
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African
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South Asian
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.206854936036688e-4
allele num: 8286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 10914
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.665697e6

MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

QD
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SIO_000300: 1.292e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.368615462998345e-5
allele num: 15702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.013e-1

ReadPosRankSum
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SIO_000300: -1.256e0

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.381e0

DP
type: SiteQuality
SIO_000300: 1.665577e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0557e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.508e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
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SIO_000300: -1.12e0

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

DP
type: SiteQuality
SIO_000300: 5.455457e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 7.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

DP
type: SiteQuality
SIO_000300: 5.456103e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 868
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496251874062968e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

DP
type: SiteQuality
SIO_000300: 5.456206e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.806767929244376e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.199e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.456716e6

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.555e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.452e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.651999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240368306275745e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 5.457148e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.205e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.776e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.456908e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 1.157e1

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.407e0

MQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.198e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55907
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

FS
type: SiteQuality
SIO_000300: 6.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 5.457711e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 6.739e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.72e-2

DP
type: SiteQuality
SIO_000300: 5.458451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e1

VQSLOD
type: SiteQuality
SIO_000300: -3.908e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 55912
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.458525e6

QD
type: SiteQuality
SIO_000300: 1.015e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.757e0

FS
type: SiteQuality
SIO_000300: 2.563e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -6.969e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0