12-70963681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963681
    reference: chr 12
allele count: 1
allele frequency: 8.585607088277212e-6
allele num: 116474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3144T>C
  hgvsp: ENST00000550358.1:c.3144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2754T>C
  hgvsp: ENST00000261266.5:c.2754T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3405T>C
  hgvsp: ENST00000551525.1:c.3405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3408T>C
  hgvsp: ENST00000334414.6:c.3408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2484T>C
  hgvsp: ENST00000550857.1:c.2484T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3045T>C
  hgvsp: ENST00000548122.1:c.3045T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2754T>C
  hgvsp: ENST00000538708.1:c.2754T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2484T>C
  hgvsp: ENST00000451516.2:c.2484T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn1136Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

12-70963681-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963681
    reference: chr 12
allele count: 1
allele frequency: 8.585607088277212e-6
allele num: 116474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2484T>A
  hgvsp: ENSP00000393028.2:p.Asn828Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3144T>A
  hgvsp: ENSP00000448058.1:p.Asn1048Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2484T>A
  hgvsp: ENSP00000447302.1:p.Asn828Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2754T>A
  hgvsp: ENSP00000438927.1:p.Asn918Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3045T>A
  hgvsp: ENSP00000446982.1:p.Asn1015Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2754T>A
  hgvsp: ENSP00000261266.5:p.Asn918Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3408T>A
  hgvsp: ENSP00000334928.6:p.Asn1136Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3405T>A
  hgvsp: ENSP00000448349.1:p.Asn1135Lys
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn1136Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

12-70963682-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963682
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963682
    reference: chr 12
allele count: 5
allele frequency: 4.292950974499871e-5
allele num: 116470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3143A>G
  hgvsp: ENSP00000448058.1:p.Asn1048Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3404A>G
  hgvsp: ENSP00000448349.1:p.Asn1135Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2483A>G
  hgvsp: ENSP00000447302.1:p.Asn828Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3044A>G
  hgvsp: ENSP00000446982.1:p.Asn1015Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2483A>G
  hgvsp: ENSP00000393028.2:p.Asn828Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3407A>G
  hgvsp: ENSP00000334928.6:p.Asn1136Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2753A>G
  hgvsp: ENSP00000438927.1:p.Asn918Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2753A>G
  hgvsp: ENSP00000261266.5:p.Asn918Ser
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Asn1136Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

12-70963686-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963686
    reference: chr 12
allele count: 1
allele frequency: 8.651267410675664e-6
allele num: 115590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2479C>G
  hgvsp: ENSP00000447302.1:p.Pro827Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2479C>G
  hgvsp: ENSP00000393028.2:p.Pro827Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3040C>G
  hgvsp: ENSP00000446982.1:p.Pro1014Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3403C>G
  hgvsp: ENSP00000334928.6:p.Pro1135Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2749C>G
  hgvsp: ENSP00000438927.1:p.Pro917Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3139C>G
  hgvsp: ENSP00000448058.1:p.Pro1047Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3400C>G
  hgvsp: ENSP00000448349.1:p.Pro1134Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2749C>G
  hgvsp: ENSP00000261266.5:p.Pro917Ala
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1135Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-70963689-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963689
    reference: chr 12
allele count: 2
allele frequency: 1.73973556019485e-5
allele num: 114960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2476T>C
  hgvsp: ENSP00000393028.2:p.Ser826Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3397T>C
  hgvsp: ENSP00000448349.1:p.Ser1133Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3037T>C
  hgvsp: ENSP00000446982.1:p.Ser1013Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3136T>C
  hgvsp: ENSP00000448058.1:p.Ser1046Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2746T>C
  hgvsp: ENSP00000261266.5:p.Ser916Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2476T>C
  hgvsp: ENSP00000447302.1:p.Ser826Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3400T>C
  hgvsp: ENSP00000334928.6:p.Ser1134Pro
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2746T>C
  hgvsp: ENSP00000438927.1:p.Ser916Pro
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15351
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41045
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1134Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

12-70963691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963691
    reference: chr 12
allele count: 2
allele frequency: 1.743587955294405e-5
allele num: 114706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2744T>C
  hgvsp: ENSP00000261266.5:p.Ile915Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2744T>C
  hgvsp: ENSP00000438927.1:p.Ile915Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2474T>C
  hgvsp: ENSP00000447302.1:p.Ile825Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3398T>C
  hgvsp: ENSP00000334928.6:p.Ile1133Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3395T>C
  hgvsp: ENSP00000448349.1:p.Ile1132Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2474T>C
  hgvsp: ENSP00000393028.2:p.Ile825Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3134T>C
  hgvsp: ENSP00000448058.1:p.Ile1045Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3035T>C
  hgvsp: ENSP00000446982.1:p.Ile1012Thr
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41188
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile1133Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

12-70963707-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963707
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963707
    reference: chr 12
allele count: 1
allele frequency: 9.3463184851487e-6
allele num: 106994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3118G>C
  hgvsp: ENSP00000448058.1:p.Val1040Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2728G>C
  hgvsp: ENSP00000438927.1:p.Val910Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3379G>C
  hgvsp: ENSP00000448349.1:p.Val1127Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3019G>C
  hgvsp: ENSP00000446982.1:p.Val1007Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2458G>C
  hgvsp: ENSP00000393028.2:p.Val820Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2728G>C
  hgvsp: ENSP00000261266.5:p.Val910Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3382G>C
  hgvsp: ENSP00000334928.6:p.Val1128Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2458G>C
  hgvsp: ENSP00000447302.1:p.Val820Leu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1128Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-70963708-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963708
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963708
    reference: chr 12
allele count: 3
allele frequency: 2.838275085621298e-5
allele num: 105698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3018T>C
  hgvsp: ENST00000548122.1:c.3018T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3378T>C
  hgvsp: ENST00000551525.1:c.3378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2727T>C
  hgvsp: ENST00000538708.1:c.2727T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3117T>C
  hgvsp: ENST00000550358.1:c.3117T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2727T>C
  hgvsp: ENST00000261266.5:c.2727T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3381T>C
  hgvsp: ENST00000334414.6:c.3381T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2457T>C
  hgvsp: ENST00000451516.2:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2457T>C
  hgvsp: ENST00000550857.1:c.2457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21937
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1127Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

12-70963715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963715
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963715
    reference: chr 12
allele count: 1
allele frequency: 9.959960956953048e-6
allele num: 100402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3110C>T
  hgvsp: ENSP00000448058.1:p.Pro1037Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3011C>T
  hgvsp: ENSP00000446982.1:p.Pro1004Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2720C>T
  hgvsp: ENSP00000261266.5:p.Pro907Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3371C>T
  hgvsp: ENSP00000448349.1:p.Pro1124Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2450C>T
  hgvsp: ENSP00000393028.2:p.Pro817Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2450C>T
  hgvsp: ENSP00000447302.1:p.Pro817Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3374C>T
  hgvsp: ENSP00000334928.6:p.Pro1125Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2720C>T
  hgvsp: ENSP00000438927.1:p.Pro907Leu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1125Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-70963718-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963718
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963718
    reference: chr 12
allele count: 2
allele frequency: 2.052629418284823e-5
allele num: 97436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368T>C
  hgvsp: ENSP00000448349.1:p.Val1123Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447T>C
  hgvsp: ENSP00000447302.1:p.Val816Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107T>C
  hgvsp: ENSP00000448058.1:p.Val1036Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717T>C
  hgvsp: ENSP00000438927.1:p.Val906Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447T>C
  hgvsp: ENSP00000393028.2:p.Val816Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371T>C
  hgvsp: ENSP00000334928.6:p.Val1124Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008T>C
  hgvsp: ENSP00000446982.1:p.Val1003Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717T>C
  hgvsp: ENSP00000261266.5:p.Val906Ala
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15586
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1124Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-70963720-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963720
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963720
    reference: chr 12
allele count: 2
allele frequency: 2.074215428014354e-5
allele num: 96422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-2A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-2A>T
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22878
  bin: 2.25e1
  variant carriers: 0
hgvs: c.3371-2A>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-70963736-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963736
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963736
    reference: chr 12
allele count: 1
allele frequency: 1.147236307734667e-5
allele num: 87166
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-18A>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-18A>T
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

12-70963737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963737
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963737
    reference: chr 12
allele count: 2
allele frequency: 2.327421682260392e-5
allele num: 85932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-19A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-19A>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

12-70963738-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963738
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963736
    reference: chr 12
allele count: 1
allele frequency: 1.165338181140167e-5
allele num: 85812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-22_2447-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-22_2717-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-22_2717-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-22_3371-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-22_3008-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-22_3107-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-22_3368-21delTT
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-22_2447-21delTT
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: TAA
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-70963746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963746
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963746
    reference: chr 12
allele count: 9
allele frequency: 1.118846345101939e-4
allele num: 80440
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-28T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-28T>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23530
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-70963749-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963749
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963749
    reference: chr 12
allele count: 1
allele frequency: 1.281755492322285e-5
allele num: 78018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-31T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-31T>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

12-70963749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963749
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963749
    reference: chr 12
allele count: 1
allele frequency: 1.281755492322285e-5
allele num: 78018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-31T>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23023
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

12-70963750-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963750
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963750
    reference: chr 12
allele count: 1
allele frequency: 1.296344309048483e-5
allele num: 77140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-32G>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-32G>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

12-70963757-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963757
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963757
    reference: chr 12
allele count: 18
allele frequency: 2.476746106004733e-4
allele num: 72676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-39T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-39T>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20710
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-70963761-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963761
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963761
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 68068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-43T>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-43T>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20853
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

12-70963762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963762
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963762
    reference: chr 12
allele count: 1
allele frequency: 1.472190324765186e-5
allele num: 67926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-44T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-44T>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18735
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

12-70963765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70963765
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70963765
    reference: chr 12
allele count: 2
allele frequency: 3.059039461609055e-5
allele num: 65380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2717-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3368-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2717-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3008-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3371-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2447-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3107-47C>T
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2447-47C>T
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21741
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17966
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4784
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

12-70964767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964767
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964767
    reference: chr 12
allele count: 1
allele frequency: 8.60141063134354e-6
allele num: 116260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+39G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+39G>A
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

12-70964769-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964769
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964769
    reference: chr 12
allele count: 1
allele frequency: 8.592689339909605e-6
allele num: 116378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+37C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+37C>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

12-70964772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964772
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964772
    reference: chr 12
allele count: 1
allele frequency: 8.578389321620972e-6
allele num: 116572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+34A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+34A>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-70964775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964775
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964775
    reference: chr 12
allele count: 90
allele frequency: 7.712610975902375e-4
allele num: 116692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+31T>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+31T>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25609
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

12-70964792-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964792
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964792
    reference: chr 12
allele count: 5
allele frequency: 4.230762721903504e-5
allele num: 118182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+14C>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+14C>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18340
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-70964795-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964795
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964795
    reference: chr 12
allele count: 1
allele frequency: 8.441525552497847e-6
allele num: 118462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+11A>C
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+11A>C
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

12-70964800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964800
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964800
    reference: chr 12
allele count: 1
allele frequency: 8.410711882653748e-6
allele num: 118896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+6G>A
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+6G>A
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3370+6G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

12-70964802-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964802
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964802
    reference: chr 12
allele count: 829
allele frequency: 6.95785003273295e-3
allele num: 119146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2446+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3007+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2446+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3370+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2716+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3367+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3106+4A>G
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2716+4A>G
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 29847
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18959
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3370+4A>G
num of homozygotes: 24
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

12-70964812-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964812
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964812
    reference: chr 12
allele count: 5
allele frequency: 4.172508178116029e-5
allele num: 119832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2710T>C
  hgvsp: ENSP00000438927.1:p.Phe904Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2710T>C
  hgvsp: ENSP00000261266.5:p.Phe904Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3361T>C
  hgvsp: ENSP00000448349.1:p.Phe1121Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3100T>C
  hgvsp: ENSP00000448058.1:p.Phe1034Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.3001T>C
  hgvsp: ENSP00000446982.1:p.Phe1001Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3364T>C
  hgvsp: ENSP00000334928.6:p.Phe1122Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2440T>C
  hgvsp: ENSP00000447302.1:p.Phe814Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2440T>C
  hgvsp: ENSP00000393028.2:p.Phe814Leu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe1122Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

12-70964820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964820
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964820
    reference: chr 12
allele count: 3
allele frequency: 2.497585667188385e-5
allele num: 120116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3092T>C
  hgvsp: ENSP00000448058.1:p.Ile1031Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2993T>C
  hgvsp: ENSP00000446982.1:p.Ile998Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2702T>C
  hgvsp: ENSP00000261266.5:p.Ile901Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3356T>C
  hgvsp: ENSP00000334928.6:p.Ile1119Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2702T>C
  hgvsp: ENSP00000438927.1:p.Ile901Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2432T>C
  hgvsp: ENSP00000393028.2:p.Ile811Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3353T>C
  hgvsp: ENSP00000448349.1:p.Ile1118Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2432T>C
  hgvsp: ENSP00000447302.1:p.Ile811Thr
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile1119Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-70964821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964821
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964821
    reference: chr 12
allele count: 1
allele frequency: 8.322652595835345e-6
allele num: 120154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3091A>G
  hgvsp: ENSP00000448058.1:p.Ile1031Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3352A>G
  hgvsp: ENSP00000448349.1:p.Ile1118Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2701A>G
  hgvsp: ENSP00000438927.1:p.Ile901Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2992A>G
  hgvsp: ENSP00000446982.1:p.Ile998Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2431A>G
  hgvsp: ENSP00000447302.1:p.Ile811Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3355A>G
  hgvsp: ENSP00000334928.6:p.Ile1119Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2701A>G
  hgvsp: ENSP00000261266.5:p.Ile901Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2431A>G
  hgvsp: ENSP00000393028.2:p.Ile811Val
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30151
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1119Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-70964823-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964823
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964823
    reference: chr 12
allele count: 2
allele frequency: 1.664031949413429e-5
allele num: 120190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2429T>A
  hgvsp: ENSP00000447302.1:p.Phe810Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2990T>A
  hgvsp: ENSP00000446982.1:p.Phe997Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3089T>A
  hgvsp: ENSP00000448058.1:p.Phe1030Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2429T>A
  hgvsp: ENSP00000393028.2:p.Phe810Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3353T>A
  hgvsp: ENSP00000334928.6:p.Phe1118Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2699T>A
  hgvsp: ENSP00000261266.5:p.Phe900Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3350T>A
  hgvsp: ENSP00000448349.1:p.Phe1117Tyr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2699T>A
  hgvsp: ENSP00000438927.1:p.Phe900Tyr
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45103
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe1118Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

12-70964826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964826
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964826
    reference: chr 12
allele count: 1
allele frequency: 8.318083513558476e-6
allele num: 120220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3350C>T
  hgvsp: ENSP00000334928.6:p.Ala1117Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3347C>T
  hgvsp: ENSP00000448349.1:p.Ala1116Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3086C>T
  hgvsp: ENSP00000448058.1:p.Ala1029Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2696C>T
  hgvsp: ENSP00000438927.1:p.Ala899Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2426C>T
  hgvsp: ENSP00000447302.1:p.Ala809Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2426C>T
  hgvsp: ENSP00000393028.2:p.Ala809Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2987C>T
  hgvsp: ENSP00000446982.1:p.Ala996Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2696C>T
  hgvsp: ENSP00000261266.5:p.Ala899Val
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1117Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-70964836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964836
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964836
    reference: chr 12
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3076C>T
  hgvsp: ENSP00000448058.1:p.Gln1026Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3337C>T
  hgvsp: ENSP00000448349.1:p.Gln1113Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2686C>T
  hgvsp: ENSP00000438927.1:p.Gln896Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2416C>T
  hgvsp: ENSP00000393028.2:p.Gln806Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2977C>T
  hgvsp: ENSP00000446982.1:p.Gln993Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3340C>T
  hgvsp: ENSP00000334928.6:p.Gln1114Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2686C>T
  hgvsp: ENSP00000261266.5:p.Gln896Ter
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2416C>T
  hgvsp: ENSP00000447302.1:p.Gln806Ter
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6467
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln1114Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

12-70964841-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964841
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964841
    reference: chr 12
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2411A>T
  hgvsp: ENSP00000447302.1:p.Asp804Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3071A>T
  hgvsp: ENSP00000448058.1:p.Asp1024Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2681A>T
  hgvsp: ENSP00000438927.1:p.Asp894Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3335A>T
  hgvsp: ENSP00000334928.6:p.Asp1112Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3332A>T
  hgvsp: ENSP00000448349.1:p.Asp1111Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2681A>T
  hgvsp: ENSP00000261266.5:p.Asp894Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2411A>T
  hgvsp: ENSP00000393028.2:p.Asp804Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2972A>T
  hgvsp: ENSP00000446982.1:p.Asp991Val
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp1112Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

12-70964843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964843
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964843
    reference: chr 12
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2409G>A
  hgvsp: ENST00000451516.2:c.2409G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3330G>A
  hgvsp: ENST00000551525.1:c.3330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2679G>A
  hgvsp: ENST00000261266.5:c.2679G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3069G>A
  hgvsp: ENST00000550358.1:c.3069G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2970G>A
  hgvsp: ENST00000548122.1:c.2970G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2679G>A
  hgvsp: ENST00000538708.1:c.2679G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3333G>A
  hgvsp: ENST00000334414.6:c.3333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2409G>A
  hgvsp: ENST00000550857.1:c.2409G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly1111Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

12-70964845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964845
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964845
    reference: chr 12
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2407G>A
  hgvsp: ENSP00000393028.2:p.Gly803Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3331G>A
  hgvsp: ENSP00000334928.6:p.Gly1111Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3067G>A
  hgvsp: ENSP00000448058.1:p.Gly1023Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3328G>A
  hgvsp: ENSP00000448349.1:p.Gly1110Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2407G>A
  hgvsp: ENSP00000447302.1:p.Gly803Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2968G>A
  hgvsp: ENSP00000446982.1:p.Gly990Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2677G>A
  hgvsp: ENSP00000438927.1:p.Gly893Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2677G>A
  hgvsp: ENSP00000261266.5:p.Gly893Arg
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1111Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-70964846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964846
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964846
    reference: chr 12
allele count: 100
allele frequency: 8.304544246611746e-4
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2406C>T
  hgvsp: ENST00000451516.2:c.2406C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2967C>T
  hgvsp: ENST00000548122.1:c.2967C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2406C>T
  hgvsp: ENST00000550857.1:c.2406C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3330C>T
  hgvsp: ENST00000334414.6:c.3330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3066C>T
  hgvsp: ENST00000550358.1:c.3066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2676C>T
  hgvsp: ENST00000261266.5:c.2676C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3327C>T
  hgvsp: ENST00000551525.1:c.3327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2676C>T
  hgvsp: ENST00000538708.1:c.2676C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20967
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29510
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1110Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

12-70964849-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964849
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964849
    reference: chr 12
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3324T>C
  hgvsp: ENST00000551525.1:c.3324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2673T>C
  hgvsp: ENST00000261266.5:c.2673T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2673T>C
  hgvsp: ENST00000538708.1:c.2673T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3063T>C
  hgvsp: ENST00000550358.1:c.3063T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3327T>C
  hgvsp: ENST00000334414.6:c.3327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2964T>C
  hgvsp: ENST00000548122.1:c.2964T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2403T>C
  hgvsp: ENST00000550857.1:c.2403T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2403T>C
  hgvsp: ENST00000451516.2:c.2403T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile1109Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD

12-70964852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964852
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964852
    reference: chr 12
allele count: 5
allele frequency: 4.149859734740966e-5
allele num: 120486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3321G>A
  hgvsp: ENST00000551525.1:c.3321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2400G>A
  hgvsp: ENST00000451516.2:c.2400G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3324G>A
  hgvsp: ENST00000334414.6:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2400G>A
  hgvsp: ENST00000550857.1:c.2400G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2670G>A
  hgvsp: ENST00000261266.5:c.2670G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2670G>A
  hgvsp: ENST00000538708.1:c.2670G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3060G>A
  hgvsp: ENST00000550358.1:c.3060G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2961G>A
  hgvsp: ENST00000548122.1:c.2961G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1108Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

12-70964854-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964854
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964854
    reference: chr 12
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2668A>T
  hgvsp: ENSP00000261266.5:p.Thr890Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3319A>T
  hgvsp: ENSP00000448349.1:p.Thr1107Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2398A>T
  hgvsp: ENSP00000393028.2:p.Thr800Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2668A>T
  hgvsp: ENSP00000438927.1:p.Thr890Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2398A>T
  hgvsp: ENSP00000447302.1:p.Thr800Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3322A>T
  hgvsp: ENSP00000334928.6:p.Thr1108Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2959A>T
  hgvsp: ENSP00000446982.1:p.Thr987Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3058A>T
  hgvsp: ENSP00000448058.1:p.Thr1020Ser
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr1108Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

12-70964877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964877
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964877
    reference: chr 12
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3296G>A
  hgvsp: ENSP00000448349.1:p.Arg1099His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3035G>A
  hgvsp: ENSP00000448058.1:p.Arg1012His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2375G>A
  hgvsp: ENSP00000393028.2:p.Arg792His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2645G>A
  hgvsp: ENSP00000261266.5:p.Arg882His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2375G>A
  hgvsp: ENSP00000447302.1:p.Arg792His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2645G>A
  hgvsp: ENSP00000438927.1:p.Arg882His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3299G>A
  hgvsp: ENSP00000334928.6:p.Arg1100His
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2936G>A
  hgvsp: ENSP00000446982.1:p.Arg979His
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1100His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-70964878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964878
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964878
    reference: chr 12
allele count: 1
allele frequency: 8.29476268683953e-6
allele num: 120558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2374C>T
  hgvsp: ENSP00000393028.2:p.Arg792Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3298C>T
  hgvsp: ENSP00000334928.6:p.Arg1100Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2644C>T
  hgvsp: ENSP00000261266.5:p.Arg882Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2935C>T
  hgvsp: ENSP00000446982.1:p.Arg979Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3295C>T
  hgvsp: ENSP00000448349.1:p.Arg1099Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2374C>T
  hgvsp: ENSP00000447302.1:p.Arg792Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3034C>T
  hgvsp: ENSP00000448058.1:p.Arg1012Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2644C>T
  hgvsp: ENSP00000438927.1:p.Arg882Cys
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1100Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

12-70964891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964891
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964891
    reference: chr 12
allele count: 13
allele frequency: 1.077889988889442e-4
allele num: 120606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2922C>T
  hgvsp: ENST00000548122.1:c.2922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2631C>T
  hgvsp: ENST00000261266.5:c.2631C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3285C>T
  hgvsp: ENST00000334414.6:c.3285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3282C>T
  hgvsp: ENST00000551525.1:c.3282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2361C>T
  hgvsp: ENST00000451516.2:c.2361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2361C>T
  hgvsp: ENST00000550857.1:c.2361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3021C>T
  hgvsp: ENST00000550358.1:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2631C>T
  hgvsp: ENST00000538708.1:c.2631C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21623
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1095Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-70964892-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964892
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964892
    reference: chr 12
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2360C>G
  hgvsp: ENSP00000393028.2:p.Ser787Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2360C>G
  hgvsp: ENSP00000447302.1:p.Ser787Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3284C>G
  hgvsp: ENSP00000334928.6:p.Ser1095Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3020C>G
  hgvsp: ENSP00000448058.1:p.Ser1007Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3281C>G
  hgvsp: ENSP00000448349.1:p.Ser1094Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2630C>G
  hgvsp: ENSP00000261266.5:p.Ser877Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2921C>G
  hgvsp: ENSP00000446982.1:p.Ser974Cys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2630C>G
  hgvsp: ENSP00000438927.1:p.Ser877Cys
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1095Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-70964901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964901
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964901
    reference: chr 12
allele count: 12
allele frequency: 9.9500837465382e-5
allele num: 120602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2621G>A
  hgvsp: ENSP00000261266.5:p.Arg874Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3272G>A
  hgvsp: ENSP00000448349.1:p.Arg1091Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3011G>A
  hgvsp: ENSP00000448058.1:p.Arg1004Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2351G>A
  hgvsp: ENSP00000393028.2:p.Arg784Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2912G>A
  hgvsp: ENSP00000446982.1:p.Arg971Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2621G>A
  hgvsp: ENSP00000438927.1:p.Arg874Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3275G>A
  hgvsp: ENSP00000334928.6:p.Arg1092Gln
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2351G>A
  hgvsp: ENSP00000447302.1:p.Arg784Gln
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg1092Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS

12-70964908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964908
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964908
    reference: chr 12
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2344G>A
  hgvsp: ENSP00000393028.2:p.Glu782Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3265G>A
  hgvsp: ENSP00000448349.1:p.Glu1089Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3004G>A
  hgvsp: ENSP00000448058.1:p.Glu1002Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2614G>A
  hgvsp: ENSP00000438927.1:p.Glu872Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3268G>A
  hgvsp: ENSP00000334928.6:p.Glu1090Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2344G>A
  hgvsp: ENSP00000447302.1:p.Glu782Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2905G>A
  hgvsp: ENSP00000446982.1:p.Glu969Lys
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2614G>A
  hgvsp: ENSP00000261266.5:p.Glu872Lys
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu1090Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

12-70964909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964909
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964909
    reference: chr 12
allele count: 4
allele frequency: 3.316034685722813e-5
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3003C>T
  hgvsp: ENST00000550358.1:c.3003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2613C>T
  hgvsp: ENST00000538708.1:c.2613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3264C>T
  hgvsp: ENST00000551525.1:c.3264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2904C>T
  hgvsp: ENST00000548122.1:c.2904C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2343C>T
  hgvsp: ENST00000451516.2:c.2343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2343C>T
  hgvsp: ENST00000550857.1:c.2343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2613C>T
  hgvsp: ENST00000261266.5:c.2613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3267C>T
  hgvsp: ENST00000334414.6:c.3267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1089Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

12-70964910-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964910
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964910
    reference: chr 12
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2612C>G
  hgvsp: ENSP00000438927.1:p.Thr871Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2342C>G
  hgvsp: ENSP00000393028.2:p.Thr781Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.3002C>G
  hgvsp: ENSP00000448058.1:p.Thr1001Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2903C>G
  hgvsp: ENSP00000446982.1:p.Thr968Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2342C>G
  hgvsp: ENSP00000447302.1:p.Thr781Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2612C>G
  hgvsp: ENSP00000261266.5:p.Thr871Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3266C>G
  hgvsp: ENSP00000334928.6:p.Thr1089Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3263C>G
  hgvsp: ENSP00000448349.1:p.Thr1088Ser
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1089Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-70964913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964913
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964913
    reference: chr 12
allele count: 4
allele frequency: 3.315814778586468e-5
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2339C>T
  hgvsp: ENSP00000393028.2:p.Ala780Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3260C>T
  hgvsp: ENSP00000448349.1:p.Ala1087Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2339C>T
  hgvsp: ENSP00000447302.1:p.Ala780Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2999C>T
  hgvsp: ENSP00000448058.1:p.Ala1000Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2609C>T
  hgvsp: ENSP00000261266.5:p.Ala870Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2900C>T
  hgvsp: ENSP00000446982.1:p.Ala967Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2609C>T
  hgvsp: ENSP00000438927.1:p.Ala870Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3263C>T
  hgvsp: ENSP00000334928.6:p.Ala1088Val
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1088Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

12-70964914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964914
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964914
    reference: chr 12
allele count: 10
allele frequency: 8.291048983517395e-5
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3259G>A
  hgvsp: ENSP00000448349.1:p.Ala1087Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3262G>A
  hgvsp: ENSP00000334928.6:p.Ala1088Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2338G>A
  hgvsp: ENSP00000447302.1:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2608G>A
  hgvsp: ENSP00000261266.5:p.Ala870Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2608G>A
  hgvsp: ENSP00000438927.1:p.Ala870Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2998G>A
  hgvsp: ENSP00000448058.1:p.Ala1000Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2899G>A
  hgvsp: ENSP00000446982.1:p.Ala967Thr
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2338G>A
  hgvsp: ENSP00000393028.2:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1088Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-70964915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964915
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964915
    reference: chr 12
allele count: 4
allele frequency: 3.316034685722813e-5
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2607C>T
  hgvsp: ENST00000261266.5:c.2607C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2337C>T
  hgvsp: ENST00000451516.2:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2898C>T
  hgvsp: ENST00000548122.1:c.2898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3261C>T
  hgvsp: ENST00000334414.6:c.3261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2337C>T
  hgvsp: ENST00000550857.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2997C>T
  hgvsp: ENST00000550358.1:c.2997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3258C>T
  hgvsp: ENST00000551525.1:c.3258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2607C>T
  hgvsp: ENST00000538708.1:c.2607C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1087Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

12-70964934-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964934
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964934
    reference: chr 12
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2318C>G
  hgvsp: ENSP00000447302.1:p.Pro773Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2588C>G
  hgvsp: ENSP00000438927.1:p.Pro863Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2318C>G
  hgvsp: ENSP00000393028.2:p.Pro773Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2978C>G
  hgvsp: ENSP00000448058.1:p.Pro993Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3239C>G
  hgvsp: ENSP00000448349.1:p.Pro1080Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2879C>G
  hgvsp: ENSP00000446982.1:p.Pro960Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3242C>G
  hgvsp: ENSP00000334928.6:p.Pro1081Arg
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2588C>G
  hgvsp: ENSP00000261266.5:p.Pro863Arg
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6500
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1081Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-70964936-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964936
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964936
    reference: chr 12
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2316T>G
  hgvsp: ENST00000550857.1:c.2316T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3237T>G
  hgvsp: ENST00000551525.1:c.3237T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2586T>G
  hgvsp: ENST00000261266.5:c.2586T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3240T>G
  hgvsp: ENST00000334414.6:c.3240T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2877T>G
  hgvsp: ENST00000548122.1:c.2877T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2976T>G
  hgvsp: ENST00000550358.1:c.2976T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2316T>G
  hgvsp: ENST00000451516.2:c.2316T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2586T>G
  hgvsp: ENST00000538708.1:c.2586T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1080Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

12-70964937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964937
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964937
    reference: chr 12
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2315C>T
  hgvsp: ENSP00000447302.1:p.Pro772Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2315C>T
  hgvsp: ENSP00000393028.2:p.Pro772Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3236C>T
  hgvsp: ENSP00000448349.1:p.Pro1079Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2876C>T
  hgvsp: ENSP00000446982.1:p.Pro959Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2975C>T
  hgvsp: ENSP00000448058.1:p.Pro992Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2585C>T
  hgvsp: ENSP00000261266.5:p.Pro862Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3239C>T
  hgvsp: ENSP00000334928.6:p.Pro1080Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2585C>T
  hgvsp: ENSP00000438927.1:p.Pro862Leu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1080Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-70964941-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964941
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964941
    reference: chr 12
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2311T>G
  hgvsp: ENSP00000447302.1:p.Phe771Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3232T>G
  hgvsp: ENSP00000448349.1:p.Phe1078Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3235T>G
  hgvsp: ENSP00000334928.6:p.Phe1079Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2872T>G
  hgvsp: ENSP00000446982.1:p.Phe958Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2581T>G
  hgvsp: ENSP00000261266.5:p.Phe861Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2971T>G
  hgvsp: ENSP00000448058.1:p.Phe991Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2581T>G
  hgvsp: ENSP00000438927.1:p.Phe861Val
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2311T>G
  hgvsp: ENSP00000393028.2:p.Phe771Val
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe1079Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

12-70964942-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964942
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964942
    reference: chr 12
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2970A>C
  hgvsp: ENST00000550358.1:c.2970A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2871A>C
  hgvsp: ENST00000548122.1:c.2871A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3234A>C
  hgvsp: ENST00000334414.6:c.3234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2310A>C
  hgvsp: ENST00000550857.1:c.2310A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3231A>C
  hgvsp: ENST00000551525.1:c.3231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2580A>C
  hgvsp: ENST00000261266.5:c.2580A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2580A>C
  hgvsp: ENST00000538708.1:c.2580A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2310A>C
  hgvsp: ENST00000451516.2:c.2310A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1078Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

12-70964945-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964945
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964945
    reference: chr 12
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2577A>C
  hgvsp: ENSP00000261266.5:p.Lys859Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2967A>C
  hgvsp: ENSP00000448058.1:p.Lys989Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2868A>C
  hgvsp: ENSP00000446982.1:p.Lys956Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2577A>C
  hgvsp: ENSP00000438927.1:p.Lys859Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3231A>C
  hgvsp: ENSP00000334928.6:p.Lys1077Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2307A>C
  hgvsp: ENSP00000393028.2:p.Lys769Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3228A>C
  hgvsp: ENSP00000448349.1:p.Lys1076Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2307A>C
  hgvsp: ENSP00000447302.1:p.Lys769Asn
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys1077Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-70964955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964955
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964955
    reference: chr 12
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3218A>G
  hgvsp: ENSP00000448349.1:p.Asn1073Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3221A>G
  hgvsp: ENSP00000334928.6:p.Asn1074Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2567A>G
  hgvsp: ENSP00000438927.1:p.Asn856Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2858A>G
  hgvsp: ENSP00000446982.1:p.Asn953Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2957A>G
  hgvsp: ENSP00000448058.1:p.Asn986Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2567A>G
  hgvsp: ENSP00000261266.5:p.Asn856Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2297A>G
  hgvsp: ENSP00000447302.1:p.Asn766Ser
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2297A>G
  hgvsp: ENSP00000393028.2:p.Asn766Ser
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6453
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn1074Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-70964978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964978
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964978
    reference: chr 12
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2544A>G
  hgvsp: ENST00000538708.1:c.2544A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2835A>G
  hgvsp: ENST00000548122.1:c.2835A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3195A>G
  hgvsp: ENST00000551525.1:c.3195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2934A>G
  hgvsp: ENST00000550358.1:c.2934A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2274A>G
  hgvsp: ENST00000550857.1:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2274A>G
  hgvsp: ENST00000451516.2:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2544A>G
  hgvsp: ENST00000261266.5:c.2544A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3198A>G
  hgvsp: ENST00000334414.6:c.3198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln1066Gln
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

12-70964982-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964982
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964982
    reference: chr 12
allele count: 7
allele frequency: 5.811443562580945e-5
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2540A>C
  hgvsp: ENSP00000261266.5:p.Asp847Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2930A>C
  hgvsp: ENSP00000448058.1:p.Asp977Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3191A>C
  hgvsp: ENSP00000448349.1:p.Asp1064Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2270A>C
  hgvsp: ENSP00000393028.2:p.Asp757Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2270A>C
  hgvsp: ENSP00000447302.1:p.Asp757Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2540A>C
  hgvsp: ENSP00000438927.1:p.Asp847Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2831A>C
  hgvsp: ENSP00000446982.1:p.Asp944Ala
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3194A>C
  hgvsp: ENSP00000334928.6:p.Asp1065Ala
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp1065Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

12-70964983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964983
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964983
    reference: chr 12
allele count: 5
allele frequency: 4.151858371807221e-5
allele num: 120428
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3193G>A
  hgvsp: ENSP00000334928.6:p.Asp1065Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3190G>A
  hgvsp: ENSP00000448349.1:p.Asp1064Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2269G>A
  hgvsp: ENSP00000393028.2:p.Asp757Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2539G>A
  hgvsp: ENSP00000438927.1:p.Asp847Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2539G>A
  hgvsp: ENSP00000261266.5:p.Asp847Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2929G>A
  hgvsp: ENSP00000448058.1:p.Asp977Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2830G>A
  hgvsp: ENSP00000446982.1:p.Asp944Asn
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2269G>A
  hgvsp: ENSP00000447302.1:p.Asp757Asn
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1065Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

12-70964984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964984
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964984
    reference: chr 12
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2538C>T
  hgvsp: ENST00000261266.5:c.2538C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2538C>T
  hgvsp: ENST00000538708.1:c.2538C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2829C>T
  hgvsp: ENST00000548122.1:c.2829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2928C>T
  hgvsp: ENST00000550358.1:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2268C>T
  hgvsp: ENST00000451516.2:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3192C>T
  hgvsp: ENST00000334414.6:c.3192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3189C>T
  hgvsp: ENST00000551525.1:c.3189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2268C>T
  hgvsp: ENST00000550857.1:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1064Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

12-70964987-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964987
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964987
    reference: chr 12
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2925T>C
  hgvsp: ENST00000550358.1:c.2925T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2535T>C
  hgvsp: ENST00000261266.5:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2826T>C
  hgvsp: ENST00000548122.1:c.2826T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3186T>C
  hgvsp: ENST00000551525.1:c.3186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2265T>C
  hgvsp: ENST00000451516.2:c.2265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2265T>C
  hgvsp: ENST00000550857.1:c.2265T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3189T>C
  hgvsp: ENST00000334414.6:c.3189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2535T>C
  hgvsp: ENST00000538708.1:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1063Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

12-70964991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70964991
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70964991
    reference: chr 12
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2822G>A
  hgvsp: ENSP00000446982.1:p.Gly941Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2921G>A
  hgvsp: ENSP00000448058.1:p.Gly974Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3182G>A
  hgvsp: ENSP00000448349.1:p.Gly1061Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2531G>A
  hgvsp: ENSP00000438927.1:p.Gly844Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2261G>A
  hgvsp: ENSP00000393028.2:p.Gly754Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3185G>A
  hgvsp: ENSP00000334928.6:p.Gly1062Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2531G>A
  hgvsp: ENSP00000261266.5:p.Gly844Glu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2261G>A
  hgvsp: ENSP00000447302.1:p.Gly754Glu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly1062Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

12-70965003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70965003
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70965003
    reference: chr 12
allele count: 1
allele frequency: 8.317253310266817e-6
allele num: 120232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2249C>T
  hgvsp: ENSP00000447302.1:p.Ser750Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2810C>T
  hgvsp: ENSP00000446982.1:p.Ser937Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2519C>T
  hgvsp: ENSP00000261266.5:p.Ser840Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2909C>T
  hgvsp: ENSP00000448058.1:p.Ser970Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2249C>T
  hgvsp: ENSP00000393028.2:p.Ser750Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3173C>T
  hgvsp: ENSP00000334928.6:p.Ser1058Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3170C>T
  hgvsp: ENSP00000448349.1:p.Ser1057Leu
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2519C>T
  hgvsp: ENSP00000438927.1:p.Ser840Leu
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1058Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-70965008-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70965008
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70965008
    reference: chr 12
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2244T>G
  hgvsp: ENST00000451516.2:c.2244T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2904T>G
  hgvsp: ENST00000550358.1:c.2904T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2514T>G
  hgvsp: ENST00000538708.1:c.2514T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2514T>G
  hgvsp: ENST00000261266.5:c.2514T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2244T>G
  hgvsp: ENST00000550857.1:c.2244T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3168T>G
  hgvsp: ENST00000334414.6:c.3168T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3165T>G
  hgvsp: ENST00000551525.1:c.3165T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2805T>G
  hgvsp: ENST00000548122.1:c.2805T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21712
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1056Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

12-70965009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70965009
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70965009
    reference: chr 12
allele count: 164
allele frequency: 1.365369565579366e-3
allele num: 120114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2243C>T
  hgvsp: ENSP00000447302.1:p.Thr748Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2804C>T
  hgvsp: ENSP00000446982.1:p.Thr935Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2903C>T
  hgvsp: ENSP00000448058.1:p.Thr968Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3167C>T
  hgvsp: ENSP00000334928.6:p.Thr1056Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2513C>T
  hgvsp: ENSP00000261266.5:p.Thr838Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2243C>T
  hgvsp: ENSP00000393028.2:p.Thr748Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2513C>T
  hgvsp: ENSP00000438927.1:p.Thr838Ile
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3164C>T
  hgvsp: ENSP00000448349.1:p.Thr1055Ile
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21685
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28468
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1056Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

12-70965014-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 70965014
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 70965014
    reference: chr 12
allele count: 1
allele frequency: 8.33152816889674e-6
allele num: 120026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000393028
  ensembl transcript: ENST00000451516
  gene symbol: PTPRB
  hgvsc: ENST00000451516.2:c.2238T>C
  hgvsp: ENST00000451516.2:c.2238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448349
  ensembl transcript: ENST00000551525
  gene symbol: PTPRB
  hgvsc: ENST00000551525.1:c.3159T>C
  hgvsp: ENST00000551525.1:c.3159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000447302
  ensembl transcript: ENST00000550857
  gene symbol: PTPRB
  hgvsc: ENST00000550857.1:c.2238T>C
  hgvsp: ENST00000550857.1:c.2238T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000334928
  ensembl transcript: ENST00000334414
  gene symbol: PTPRB
  hgvsc: ENST00000334414.6:c.3162T>C
  hgvsp: ENST00000334414.6:c.3162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000446982
  ensembl transcript: ENST00000548122
  gene symbol: PTPRB
  hgvsc: ENST00000548122.1:c.2799T>C
  hgvsp: ENST00000548122.1:c.2799T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000448058
  ensembl transcript: ENST00000550358
  gene symbol: PTPRB
  hgvsc: ENST00000550358.1:c.2898T>C
  hgvsp: ENST00000550358.1:c.2898T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000261266
  ensembl transcript: ENST00000261266
  gene symbol: PTPRB
  hgvsc: ENST00000261266.5:c.2508T>C
  hgvsp: ENST00000261266.5:c.2508T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127329
  ensembl protein: ENSP00000438927
  ensembl transcript: ENST00000538708
  gene symbol: PTPRB
  hgvsc: ENST00000538708.1:c.2508T>C
  hgvsp: ENST00000538708.1:c.2508T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9665
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His1054His
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 6395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.207437816952427e-4
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 2.417e0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 1.6046e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6395
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.062022090059473e-4
allele num: 9416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.6046e6

FS
type: SiteQuality
SIO_000300: 2.417e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.207729468599034e-4
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.189459350725714e-5
allele num: 64626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.603985e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 1.137e0

QD
type: SiteQuality
SIO_000300: 1.481e1

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2185
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.223390518354546e-5
allele num: 10842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.044e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.584216e6

FS
type: SiteQuality
SIO_000300: 5.711e0

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

GenotypeQuality
all individuals: 6135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.133519255475825e-5
allele num: 63826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 1.608e0

DP
type: SiteQuality
SIO_000300: 1.570806e6

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.450980392156863e-4
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63708
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.565804e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.037559659680432e-4
allele num: 9638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59434
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.425379e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.35e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ReadPosRankSum
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SIO_000300: 1.18e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.114391898803232e-5
allele num: 58658
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.013e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

FS
type: SiteQuality
SIO_000300: 2.953e0

DP
type: SiteQuality
SIO_000300: 1.398097e6

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.147578609134726e-4
allele num: 8714
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.28836e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.022e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53974
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.445922498554077e-4
allele num: 13832
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.748125937031484e-5
allele num: 53360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13714
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.2e-1

FS
type: SiteQuality
SIO_000300: 2.2391e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.355e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.082725871620777e-5
allele num: 48014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.6e-3

ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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DP
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SIO_000300: 9.79378e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.227436060029592e-5
allele num: 47310
num of homozygotes: 0

European (Finnish)
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DP
type: SiteQuality
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MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 12728
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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Latino
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.262136361579876e-5
allele num: 44206
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.303052866716307e-3
allele num: 5372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12158
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.618646811265782e-4
allele num: 6178
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.93612e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
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FS
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SIO_000300: 3.2351e1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42888
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
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SIO_000300: 5.936e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.718803712616019e-4
allele num: 5818
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42888
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 11930
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.73947e5

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.966181675186787e-4
allele num: 5086
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42432
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.197e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 8.66151e5

QD
type: SiteQuality
SIO_000300: 1.264e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.579778830963665e-3
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39832
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

DP
type: SiteQuality
SIO_000300: 8.29243e5

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.387e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37088
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.10611e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 2.783e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.221e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 526
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.192021043402017e-4
allele num: 4562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36984
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

DP
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.641430666817105e-5
allele num: 35452
num of homozygotes: 0

African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

MQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.177856301531213e-4
allele num: 8490
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele num: 14178
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Latino
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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DP
type: SiteQuality
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533083951677194e-5
allele num: 65228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.496927e6

VQSLOD
type: SiteQuality
SIO_000300: -2.789e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

QD
type: SiteQuality
SIO_000300: 3.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

GenotypeQuality
all individuals: 2257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5738
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531018433461939e-5
allele num: 65316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.508143e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

GenotypeQuality
all individuals: 1451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 9.75e1
variant carriers: 90

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 90
allele frequency: 7.944915254237288e-3
allele num: 11328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.520025e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.442e1

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.077364854599046e-5
allele num: 65818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 4.219e0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 1.57847e6

QD
type: SiteQuality
SIO_000300: 1.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42729
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.485925541574782e-5
allele num: 15418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 1.585015e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02880658436214e-4
allele num: 9720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.596483e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 1564
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3653
bin: 9.75e1
variant carriers: 802

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43330
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1428
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.713585434173669e-3
allele num: 11424
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.393665158371041e-3
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.267573696145125e-4
allele num: 66150
num of homozygotes: 0

African
type: Population
allele count: 780
allele frequency: 8.003283398317258e-2
allele num: 9746
num of homozygotes: 23

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.487e1

DP
type: SiteQuality
SIO_000300: 1.61627e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.837030119075414e-4
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.549e0

QD
type: SiteQuality
SIO_000300: 1.154e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.612441e6

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513993379476377e-5
allele num: 66460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.618699e6

FS
type: SiteQuality
SIO_000300: 5.119e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619154e6

MQRankSum
type: SiteQuality
SIO_000300: -1.937e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.236e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2918
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00815209216978e-5
allele num: 66486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.448e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.620153e6

FS
type: SiteQuality
SIO_000300: 1.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.406e0

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 396
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
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variant carriers: 0

GenotypeQuality
all individuals: 6425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.621708e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
all individuals: 45131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

FS
type: SiteQuality
SIO_000300: 1.071e0

VQSLOD
type: SiteQuality
SIO_000300: -6.627e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.617e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.625737e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.266e0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 1469
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.605e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 1.62711e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6455
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 1466
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.35e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
type: SiteQuality
SIO_000300: 1.628222e6

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
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GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6471
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.608e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.629253e6

QD
type: SiteQuality
SIO_000300: 1.323e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 9.75e1
variant carriers: 100

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 86
allele frequency: 1.002097413190398e-2
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.907542579075426e-4
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0

DP
type: SiteQuality
SIO_000300: 1.632731e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1441
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
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GenotypeQuality
all individuals: 2902
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variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 6493
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GenotypeQuality
all individuals: 45476
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variant carriers: 0

GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 1634
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

DP
type: SiteQuality
SIO_000300: 1.63015e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 7.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 764
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GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6487
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.43161094224924e-4
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

FS
type: SiteQuality
SIO_000300: 1.0094e1

DP
type: SiteQuality
SIO_000300: 1.631325e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.051e1

GenotypeQuality
all individuals: 1630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45616
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.631344e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.704e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.624e1

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.457e0

DP
type: SiteQuality
SIO_000300: 1.634813e6

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -6.67e-2

QD
type: SiteQuality
SIO_000300: 8.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.634709e6

GenotypeQuality
all individuals: 2910
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.394700139470014e-3
allele num: 8604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 1.63573e6

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

DP
type: SiteQuality
SIO_000300: 1.6353e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049821530339842e-4
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.636475e6

FS
type: SiteQuality
SIO_000300: 5.26e-1

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6521
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.397e0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.798e1

FS
type: SiteQuality
SIO_000300: 4.502e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.238e0

DP
type: SiteQuality
SIO_000300: 1.636722e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.534e1

GenotypeQuality
all individuals: 2893
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45978
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.485130111524163e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.373e1

DP
type: SiteQuality
SIO_000300: 1.6368e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6530
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.798e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.551e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.103e1

FS
type: SiteQuality
SIO_000300: 1.178e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 1.636535e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.636892e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

FS
type: SiteQuality
SIO_000300: 1.757e0

QD
type: SiteQuality
SIO_000300: 1.211e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.499745043342632e-4
allele num: 66678
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.637357e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 6.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.998260504453708e-5
allele num: 66686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.637181e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.219e0

DP
type: SiteQuality
SIO_000300: 1.637049e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.038e1

QD
type: SiteQuality
SIO_000300: 1.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 1.418e0

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 1.636966e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.423e0

QD
type: SiteQuality
SIO_000300: 1.068e1

DP
type: SiteQuality
SIO_000300: 1.63708e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.094e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.299e1

DP
type: SiteQuality
SIO_000300: 1.636876e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 1.636729e6

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

FS
type: SiteQuality
SIO_000300: 1.342e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.44e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.222e0

DP
type: SiteQuality
SIO_000300: 1.636651e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.146e0

MQRankSum
type: SiteQuality
SIO_000300: 8.41e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.189e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-1

DP
type: SiteQuality
SIO_000300: 1.63625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.795e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.591e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.012e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.633855e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 320
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.15307582260372e-4
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.633684e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.652244708071644e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.486e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 8.771000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 1.633614e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.633501e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.437e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.675e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

FS
type: SiteQuality
SIO_000300: 3.529e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 728
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.867e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6274
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.629672e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.191e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6273
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.121449559255632e-5
allele num: 16336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.627711e6

QD
type: SiteQuality
SIO_000300: 1.145e1

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.622e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.061e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

GenotypeQuality
all individuals: 1344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.75e1
variant carriers: 164

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6233
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 3.573919107391911e-3
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.096681687832855e-4
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 117
allele frequency: 1.760245531684419e-3
allele num: 66468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.631842e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.503e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2