11-5718604-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5718604
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5718604
    reference: chr 11
allele count: 1
allele frequency: 1.093756835980225e-5
allele num: 91428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-11980T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.519+31A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.291A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-17136T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.519+31A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.519+31A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.250+31A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.423+719A>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21488
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-5718607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5718607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5718607
    reference: chr 11
allele count: 1
allele frequency: 1.117443289753045e-5
allele num: 89490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.423+722C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.250+34C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.294C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.519+34C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.519+34C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.519+34C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-11983G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-17139G>A
  variant of: http://identifiers.org/hgnc/16276
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5689
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

11-5718625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5718625
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5718625
    reference: chr 11
allele count: 1
allele frequency: 1.267362871337321e-5
allele num: 78904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.250+52C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.519+52C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-17157G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12001G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.519+52C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.519+52C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.312C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.423+740C>T
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19723
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-5719495-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719495
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719495
    reference: chr 11
allele count: 4
allele frequency: 3.37490086228717e-5
allele num: 118522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1182A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18027T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12871T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-50A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-50A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-50A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-50A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-50A>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13991
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-5719499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719499
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719499
    reference: chr 11
allele count: 1
allele frequency: 8.43554400823309e-6
allele num: 118546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-46C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18031G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1186C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-46C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-46C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-46C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12875G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-46C>T
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13759
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-5719503-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719503
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719503
    reference: chr 11
allele count: 3
allele frequency: 2.526060524410165e-5
allele num: 118762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-42A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1190A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12879T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-42A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-42A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-42A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18035T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-42A>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

11-5719504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719504
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719504
    reference: chr 11
allele count: 1988
allele frequency: 1.67458472320496e-2
allele num: 118716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12880T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-41A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18036T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-41A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1191A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-41A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-41A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-41A>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 5.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 3.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11408
  bin: 2.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 7.75e1
  variant carriers: 3
num of homozygotes: 38
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

11-5719506-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719506
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719506
    reference: chr 11
allele count: 2
allele frequency: 1.683926917571777e-5
allele num: 118770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-39C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12882G>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-39C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18038G>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-39C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-39C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1193C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-39C>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-5719522-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719522
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719518
    reference: chr 11
allele count: 1
allele frequency: 8.365680631776201e-6
allele num: 119536
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-19_520-16delTTCT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-19_424-16delTTCT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-19_251-16delTTCT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18058_-61-18055delAAGA
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1213_1216delTTCT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12902_-440-12899delAAGA
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-19_520-16delTTCT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-19_520-16delTTCT
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CTCTT
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

11-5719523-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719523
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719523
    reference: chr 11
allele count: 1
allele frequency: 8.361483661660925e-6
allele num: 119596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-22T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-22T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-22T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18055A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-22T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-22T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12899A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1210T>A
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

11-5719525-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719525
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719525
    reference: chr 11
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12901A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1212T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18057A>G
  variant of: http://identifiers.org/hgnc/16276
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13838
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

11-5719526-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719526
    reference: chr 11
allele count: 31
allele frequency: 2.588812987490188e-4
allele num: 119746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-19T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1213T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18058A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-19T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12902A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-19T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-19T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-19T>C
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-5719534-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719534
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719534
    reference: chr 11
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1221T>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-11T>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-11T>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-11T>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12910A>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18066A>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-11T>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-11T>G
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

11-5719539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719539
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719539
    reference: chr 11
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12915G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.424-6C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.520-6C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.251-6C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.520-6C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.520-6C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18071G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1226C>T
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
hgvs: c.520-6C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-5719546-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719546
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719545
    reference: chr 11
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12923delA
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.523delT
  hgvsp: ENSP00000369299.3:p.Tyr175IlefsTer10
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.427delT
  hgvsp: ENSP00000393250.1:p.Tyr143IlefsTer10
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.523delT
  hgvsp: ENSP00000400417.1:p.Tyr175IlefsTer10
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.523delT
  hgvsp: ENSP00000396849.1:p.Tyr175IlefsTer10
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18079delA
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1235delT
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.254delT
  hgvsp: ENSP00000388994.1:p.Tyr86IlefsTer10
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr175IlefsTer10
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

11-5719559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719559
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719559
    reference: chr 11
allele count: 9
allele frequency: 7.455762475975876e-5
allele num: 120712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.265C>T
  hgvsp: ENST00000414897.1:c.265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12935G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.534C>T
  hgvsp: ENST00000425490.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1246C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18091G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.534C>T
  hgvsp: ENST00000379965.3:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.534C>T
  hgvsp: ENST00000414641.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.438C>T
  hgvsp: ENST00000454828.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile178Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

11-5719560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719560
    reference: chr 11
allele count: 2
allele frequency: 1.656534199148542e-5
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.266G>A
  hgvsp: ENSP00000388994.1:p.Glu90Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.535G>A
  hgvsp: ENSP00000369299.3:p.Glu179Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12936C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18092C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.535G>A
  hgvsp: ENSP00000400417.1:p.Glu179Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.439G>A
  hgvsp: ENSP00000393250.1:p.Glu147Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.535G>A
  hgvsp: ENSP00000396849.1:p.Glu179Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1247G>A
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu179Lys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-5719565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719565
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719565
    reference: chr 11
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.271A>G
  hgvsp: ENST00000414897.1:c.271A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18097T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.444A>G
  hgvsp: ENST00000454828.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.540A>G
  hgvsp: ENST00000379965.3:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.540A>G
  hgvsp: ENST00000425490.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1252A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12941T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.540A>G
  hgvsp: ENST00000414641.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg180Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

11-5719569-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719569
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719569
    reference: chr 11
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.544A>T
  hgvsp: ENSP00000400417.1:p.Lys182Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.544A>T
  hgvsp: ENSP00000369299.3:p.Lys182Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.448A>T
  hgvsp: ENSP00000393250.1:p.Lys150Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.544A>T
  hgvsp: ENSP00000396849.1:p.Lys182Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12945T>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.275A>T
  hgvsp: ENSP00000388994.1:p.Lys93Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1256A>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18101T>A
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys182Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

11-5719571-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719571
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719571
    reference: chr 11
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.546G>C
  hgvsp: ENSP00000369299.3:p.Lys182Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.277G>C
  hgvsp: ENSP00000388994.1:p.Lys93Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1258G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.546G>C
  hgvsp: ENSP00000396849.1:p.Lys182Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.546G>C
  hgvsp: ENSP00000400417.1:p.Lys182Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12947C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.450G>C
  hgvsp: ENSP00000393250.1:p.Lys150Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18103C>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys182Asn
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

11-5719576-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719576
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719575
    reference: chr 11
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12953delC
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.552delG
  hgvsp: ENSP00000400417.1:p.Phe187SerfsTer4
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.552delG
  hgvsp: ENSP00000396849.1:p.Phe187SerfsTer4
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.552delG
  hgvsp: ENSP00000369299.3:p.Phe187SerfsTer4
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.456delG
  hgvsp: ENSP00000393250.1:p.Phe155SerfsTer4
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1264delG
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18109delC
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.283delG
  hgvsp: ENSP00000388994.1:p.Phe98SerfsTer4
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe187SerfsTer4
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: TG
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-5719578-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719578
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719578
    reference: chr 11
allele count: 6
allele frequency: 4.968861799390487e-5
allele num: 120752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12954T>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.284A>C
  hgvsp: ENSP00000388994.1:p.Lys96Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18110T>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.553A>C
  hgvsp: ENSP00000400417.1:p.Lys185Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1265A>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.553A>C
  hgvsp: ENSP00000369299.3:p.Lys185Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.457A>C
  hgvsp: ENSP00000393250.1:p.Lys153Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.553A>C
  hgvsp: ENSP00000396849.1:p.Lys185Gln
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13927
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Lys185Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

11-5719581-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719581
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719581
    reference: chr 11
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.460G>C
  hgvsp: ENSP00000393250.1:p.Gly154Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.556G>C
  hgvsp: ENSP00000369299.3:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.556G>C
  hgvsp: ENSP00000400417.1:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1268G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12957C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.556G>C
  hgvsp: ENSP00000396849.1:p.Gly186Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.287G>C
  hgvsp: ENSP00000388994.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18113C>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly186Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-5719582-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719582
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719582
    reference: chr 11
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12958C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18114C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1269G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.557G>C
  hgvsp: ENSP00000396849.1:p.Gly186Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.288G>C
  hgvsp: ENSP00000388994.1:p.Gly97Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.557G>C
  hgvsp: ENSP00000400417.1:p.Gly186Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.461G>C
  hgvsp: ENSP00000393250.1:p.Gly154Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.557G>C
  hgvsp: ENSP00000369299.3:p.Gly186Ala
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly186Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

11-5719583-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719583
    reference: chr 11
allele count: 11
allele frequency: 9.109278213918977e-5
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12959C>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.558G>T
  hgvsp: ENST00000414641.1:c.558G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.558G>T
  hgvsp: ENST00000379965.3:c.558G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.289G>T
  hgvsp: ENST00000414897.1:c.289G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.558G>T
  hgvsp: ENST00000425490.1:c.558G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18115C>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.462G>T
  hgvsp: ENST00000454828.1:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1270G>T
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly186Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

11-5719586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719586
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719586
    reference: chr 11
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.561C>T
  hgvsp: ENST00000379965.3:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12962G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.292C>T
  hgvsp: ENST00000414897.1:c.292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.465C>T
  hgvsp: ENST00000454828.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.561C>T
  hgvsp: ENST00000414641.1:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18118G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.561C>T
  hgvsp: ENST00000425490.1:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1273C>T
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13933
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe187Phe
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

11-5719588-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719588
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719588
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.467A>G
  hgvsp: ENSP00000393250.1:p.Asn156Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1275A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.294A>G
  hgvsp: ENSP00000388994.1:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.563A>G
  hgvsp: ENSP00000369299.3:p.Asn188Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12964T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.563A>G
  hgvsp: ENSP00000400417.1:p.Asn188Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.563A>G
  hgvsp: ENSP00000396849.1:p.Asn188Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18120T>C
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn188Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-5719591-A-AAATGAGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719591
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719599
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: AAATGAGAG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.298_305dupAATGAGAG
  hgvsp: ENSP00000388994.1:p.Val103GlufsTer2
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.471_478dupAATGAGAG
  hgvsp: ENSP00000393250.1:p.Val160GlufsTer2
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.567_574dupAATGAGAG
  hgvsp: ENSP00000396849.1:p.Val192GlufsTer2
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.567_574dupAATGAGAG
  hgvsp: ENSP00000369299.3:p.Val192GlufsTer2
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.567_574dupAATGAGAG
  hgvsp: ENSP00000400417.1:p.Val192GlufsTer2
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13934
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val192GlufsTer2
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-5719595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719595
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719595
    reference: chr 11
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.474G>A
  hgvsp: ENSP00000393250.1:p.Met158Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.301G>A
  hgvsp: ENSP00000388994.1:p.Met101Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.570G>A
  hgvsp: ENSP00000369299.3:p.Met190Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1282G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18127C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12971C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.570G>A
  hgvsp: ENSP00000400417.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.570G>A
  hgvsp: ENSP00000396849.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13935
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met190Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

11-5719602-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719602
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719602
    reference: chr 11
allele count: 11
allele frequency: 9.109127345600292e-5
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18134T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.481A>G
  hgvsp: ENSP00000393250.1:p.Ile161Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.308A>G
  hgvsp: ENSP00000388994.1:p.Ile104Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12978T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.577A>G
  hgvsp: ENSP00000400417.1:p.Ile193Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.577A>G
  hgvsp: ENSP00000396849.1:p.Ile193Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1289A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.577A>G
  hgvsp: ENSP00000369299.3:p.Ile193Val
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile193Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-5719612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719612
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719612
    reference: chr 11
allele count: 26
allele frequency: 2.153030804902285e-4
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12988T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.587A>G
  hgvsp: ENSP00000396849.1:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.491A>G
  hgvsp: ENSP00000393250.1:p.Asn164Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1299A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.318A>G
  hgvsp: ENSP00000388994.1:p.Asn107Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18144T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.587A>G
  hgvsp: ENSP00000369299.3:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.587A>G
  hgvsp: ENSP00000400417.1:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20575
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn196Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-5719613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719613
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719613
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12989A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.492T>C
  hgvsp: ENST00000454828.1:c.492T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.588T>C
  hgvsp: ENST00000425490.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.588T>C
  hgvsp: ENST00000414641.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.588T>C
  hgvsp: ENST00000379965.3:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1300T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.319T>C
  hgvsp: ENST00000414897.1:c.319T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18145A>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn196Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-5719615-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719615
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719615
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18147T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.590A>G
  hgvsp: ENSP00000369299.3:p.Glu197Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.321A>G
  hgvsp: ENSP00000388994.1:p.Glu108Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1302A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.494A>G
  hgvsp: ENSP00000393250.1:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-12991T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.590A>G
  hgvsp: ENSP00000400417.1:p.Glu197Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.590A>G
  hgvsp: ENSP00000396849.1:p.Glu197Gly
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu197Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-5719626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719626
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719626
    reference: chr 11
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13002C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.332G>A
  hgvsp: ENSP00000388994.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1313G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.601G>A
  hgvsp: ENSP00000369299.3:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.601G>A
  hgvsp: ENSP00000396849.1:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.601G>A
  hgvsp: ENSP00000400417.1:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.505G>A
  hgvsp: ENSP00000393250.1:p.Glu169Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18158C>T
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu201Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

11-5719629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719629
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719629
    reference: chr 11
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.604C>T
  hgvsp: ENST00000379965.3:c.604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.604C>T
  hgvsp: ENST00000414641.1:c.604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18161G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.604C>T
  hgvsp: ENST00000425490.1:c.604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13005G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.508C>T
  hgvsp: ENST00000454828.1:c.508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1316C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.335C>T
  hgvsp: ENST00000414897.1:c.335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu202Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

11-5719634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719634
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719634
    reference: chr 11
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.609A>G
  hgvsp: ENST00000379965.3:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.513A>G
  hgvsp: ENST00000454828.1:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.609A>G
  hgvsp: ENST00000414641.1:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13010T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18166T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.340A>G
  hgvsp: ENST00000414897.1:c.340A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000400417
  ensembl transcript: ENST00000425490
  gene symbol: TRIM22
  hgvsc: ENST00000425490.1:c.609A>G
  hgvsp: ENST00000425490.1:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1321A>G
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13954
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln203Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-5719644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719644
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719644
    reference: chr 11
allele count: 10
allele frequency: 8.280750567231414e-5
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.619G>A
  hgvsp: ENSP00000369299.3:p.Glu207Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1331G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13020C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.619G>A
  hgvsp: ENSP00000396849.1:p.Glu207Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18176C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.523G>A
  hgvsp: ENSP00000393250.1:p.Glu175Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.350G>A
  hgvsp: ENSP00000388994.1:p.Glu118Lys
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5153
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu207Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

11-5719645-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719645
    reference: chr 11
allele count: 4
allele frequency: 3.312355084465055e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.351A>T
  hgvsp: ENSP00000388994.1:p.Glu118Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.620A>T
  hgvsp: ENSP00000369299.3:p.Glu207Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13021T>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.620A>T
  hgvsp: ENSP00000396849.1:p.Glu207Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.524A>T
  hgvsp: ENSP00000393250.1:p.Glu175Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18177T>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1332A>T
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu207Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

11-5719646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719646
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719646
    reference: chr 11
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13022T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.352A>G
  hgvsp: ENST00000414897.1:c.352A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.621A>G
  hgvsp: ENST00000379965.3:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1333A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.621A>G
  hgvsp: ENST00000414641.1:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18178T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.525A>G
  hgvsp: ENST00000454828.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: c.352A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

11-5719648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719648
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719648
    reference: chr 11
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18180C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.623G>A
  hgvsp: ENSP00000369299.3:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1335G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13024C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.623G>A
  hgvsp: ENSP00000396849.1:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.527G>A
  hgvsp: ENSP00000393250.1:p.Gly176Asp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+1G>A
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13964
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: c.353+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-5719649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719649
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719649
    reference: chr 11
allele count: 1245
allele frequency: 1.03098759502476e-2
allele num: 120758
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.624T>C
  hgvsp: ENST00000379965.3:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.624T>C
  hgvsp: ENST00000414641.1:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13025A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1336T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.528T>C
  hgvsp: ENST00000454828.1:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18181A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+2T>C
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 14342
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 4.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 4.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14798
  bin: 9.75e1
  variant carriers: 1207
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: c.353+2T>C
num of homozygotes: 34
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-5719663-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719663
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719663
    reference: chr 11
allele count: 6
allele frequency: 4.968779502128294e-5
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13039A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.638T>C
  hgvsp: ENSP00000369299.3:p.Leu213Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+16T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.638T>C
  hgvsp: ENSP00000396849.1:p.Leu213Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.542T>C
  hgvsp: ENSP00000393250.1:p.Leu181Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1350T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18195A>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14332
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu213Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

11-5719664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719664
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719664
    reference: chr 11
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.639G>A
  hgvsp: ENST00000414641.1:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.639G>A
  hgvsp: ENST00000379965.3:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1351G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13040C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+17G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.543G>A
  hgvsp: ENST00000454828.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18196C>T
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu213Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

11-5719666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719666
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719666
    reference: chr 11
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13042T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1353A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.545A>G
  hgvsp: ENSP00000393250.1:p.Asp182Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.641A>G
  hgvsp: ENSP00000369299.3:p.Asp214Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.641A>G
  hgvsp: ENSP00000396849.1:p.Asp214Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+19A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18198T>C
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14334
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp214Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

11-5719667-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719667
    reference: chr 11
allele count: 2
allele frequency: 1.658319790388379e-5
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.642T>A
  hgvsp: ENSP00000369299.3:p.Asp214Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18199A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13043A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1354T>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.642T>A
  hgvsp: ENSP00000396849.1:p.Asp214Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.546T>A
  hgvsp: ENSP00000393250.1:p.Asp182Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+20T>A
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp214Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

11-5719667-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719667
    reference: chr 11
allele count: 30471
allele frequency: 2.526533116646214e-1
allele num: 120604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.642T>C
  hgvsp: ENST00000414641.1:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18199A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.642T>C
  hgvsp: ENST00000379965.3:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+20T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1354T>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.546T>C
  hgvsp: ENST00000454828.1:c.546T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13043A>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 6.75e1
  variant carriers: 1511
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 4.25e1
  variant carriers: 2715
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 3.75e1
  variant carriers: 2038
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 5.25e1
  variant carriers: 2841
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 2032
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.25e1
  variant carriers: 1277
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 2.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 9.75e1
  variant carriers: 4023
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.75e1
  variant carriers: 2621
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 1143
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 441
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.25e1
  variant carriers: 686
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.75e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.75e1
  variant carriers: 603
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.75e1
  variant carriers: 2863
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 7.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 4776
  bin: 6.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14399
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 46
hgvs: p.Asp214Asp
num of homozygotes: 4172
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-5719670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719670
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719670
    reference: chr 11
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18202G>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.549C>A
  hgvsp: ENSP00000393250.1:p.Asn183Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1357C>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13046G>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.645C>A
  hgvsp: ENSP00000396849.1:p.Asn215Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.645C>A
  hgvsp: ENSP00000369299.3:p.Asn215Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+23C>A
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11170
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn215Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-5719674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719674
    reference: chr 11
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+27G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.649G>A
  hgvsp: ENSP00000369299.3:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18206C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.649G>A
  hgvsp: ENSP00000396849.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1361G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.553G>A
  hgvsp: ENSP00000393250.1:p.Ala185Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13050C>T
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11161
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7882
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala217Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-5719677-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719677
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719677
    reference: chr 11
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18209C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1364G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.652G>C
  hgvsp: ENSP00000396849.1:p.Ala218Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.353+30G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.556G>C
  hgvsp: ENSP00000393250.1:p.Ala186Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.652G>C
  hgvsp: ENSP00000369299.3:p.Ala218Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13053C>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala218Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-5719680-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719680
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719680
    reference: chr 11
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.559G>C
  hgvsp: ENSP00000393250.1:p.Ala187Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1367G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18212C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-30G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.655G>C
  hgvsp: ENSP00000396849.1:p.Ala219Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.655G>C
  hgvsp: ENSP00000369299.3:p.Ala219Pro
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13056C>G
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala219Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

11-5719684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719684
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719684
    reference: chr 11
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.659C>T
  hgvsp: ENSP00000369299.3:p.Thr220Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1371C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.659C>T
  hgvsp: ENSP00000396849.1:p.Thr220Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-26C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13060G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18216G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.563C>T
  hgvsp: ENSP00000393250.1:p.Thr188Ile
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7823
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr220Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-5719695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719695
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719695
    reference: chr 11
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.670G>A
  hgvsp: ENSP00000396849.1:p.Val224Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.574G>A
  hgvsp: ENSP00000393250.1:p.Val192Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13071C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18227C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-15G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1382G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.670G>A
  hgvsp: ENSP00000369299.3:p.Val224Ile
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19711
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11146
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val224Ile
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-5719698-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719698
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719698
    reference: chr 11
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.673C>G
  hgvsp: ENSP00000396849.1:p.Gln225Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18230G>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.577C>G
  hgvsp: ENSP00000393250.1:p.Gln193Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1385C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-12C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.673C>G
  hgvsp: ENSP00000369299.3:p.Gln225Glu
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13074G>C
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln225Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-5719703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719703
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719703
    reference: chr 11
allele count: 2
allele frequency: 1.658677370664632e-5
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13079C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.678G>A
  hgvsp: ENST00000414641.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.678G>A
  hgvsp: ENST00000379965.3:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1390G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18235C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-7G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.582G>A
  hgvsp: ENST00000454828.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: c.354-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-5719705-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719705
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719705
    reference: chr 11
allele count: 2
allele frequency: 1.658649859014762e-5
allele num: 120580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18237C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13081C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.354-5G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000396849
  ensembl transcript: ENST00000414641
  gene symbol: TRIM22
  hgvsc: ENST00000414641.1:c.680G>C
  hgvsp: ENSP00000396849.1:p.Arg227Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.584G>C
  hgvsp: ENSP00000393250.1:p.Arg195Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1392G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.680G>C
  hgvsp: ENSP00000369299.3:p.Arg227Thr
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg227Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

11-5719713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719713
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719713
    reference: chr 11
allele count: 2
allele frequency: 1.660109235187675e-5
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13089C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.357G>A
  hgvsp: ENSP00000388994.1:p.Cys120Tyr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1400G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18245C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.688G>A
  hgvsp: ENSP00000369299.3:p.Ala230Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.592G>A
  hgvsp: ENSP00000393250.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala230Thr
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-5719715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719715
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719715
    reference: chr 11
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.594C>T
  hgvsp: ENST00000454828.1:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13091G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.359C>T
  hgvsp: ENSP00000388994.1:p.Gln121Ter
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1402C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.690C>T
  hgvsp: ENST00000379965.3:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18247G>A
  variant of: http://identifiers.org/hgnc/16276
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln121Ter
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

11-5719719-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719719
    reference: chr 11
allele count: 492
allele frequency: 4.086718165960628e-3
allele num: 120390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.694A>G
  hgvsp: ENSP00000369299.3:p.Thr232Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1406A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.598A>G
  hgvsp: ENSP00000393250.1:p.Thr200Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.363A>G
  hgvsp: ENSP00000388994.1:p.His122Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18251T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13095T>C
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 18843
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 3.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4453
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr232Ala
num of homozygotes: 9
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

11-5719720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719720
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719720
    reference: chr 11
allele count: 2
allele frequency: 1.66159879035608e-5
allele num: 120366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18252G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.695C>T
  hgvsp: ENSP00000369299.3:p.Thr232Met
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.364C>T
  hgvsp: ENST00000414897.1:c.364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.599C>T
  hgvsp: ENSP00000393250.1:p.Thr200Met
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1407C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13096G>A
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr232Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-5719721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719721
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719721
    reference: chr 11
allele count: 26
allele frequency: 2.160976096279797e-4
allele num: 120316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.365G>A
  hgvsp: ENSP00000388994.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1408G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.600G>A
  hgvsp: ENST00000454828.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18253C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13097C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.696G>A
  hgvsp: ENST00000379965.3:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7330
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10977
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 24357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala123Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-5719726-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719726
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719726
    reference: chr 11
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.605T>A
  hgvsp: ENSP00000393250.1:p.Ile202Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.370T>A
  hgvsp: ENSP00000388994.1:p.His124Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18258A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13102A>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.701T>A
  hgvsp: ENSP00000369299.3:p.Ile234Asn
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1413T>A
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10957
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile234Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-5719736-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719736
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719736
    reference: chr 11
allele count: 6
allele frequency: 5.002084201750729e-5
allele num: 119950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.615C>G
  hgvsp: ENST00000454828.1:c.615C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.380C>G
  hgvsp: ENSP00000388994.1:p.Pro128Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1423C>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13112G>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18268G>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.711C>G
  hgvsp: ENST00000379965.3:c.711C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17747
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro128Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

11-5719740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719740
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719740
    reference: chr 11
allele count: 16
allele frequency: 1.336049968268813e-4
allele num: 119756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18272G>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.384C>T
  hgvsp: ENSP00000388994.1:p.Ala129Val
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.715C>T
  hgvsp: ENSP00000369299.3:p.Arg239Trp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.619C>T
  hgvsp: ENSP00000393250.1:p.Arg207Trp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1427C>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13116G>A
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12420
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10957
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 20674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg239Trp
num of homozygotes: 1
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

11-5719741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719741
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719741
    reference: chr 11
allele count: 48
allele frequency: 4.011633737839735e-4
allele num: 119652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.385G>A
  hgvsp: ENST00000414897.1:c.385G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18273C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.716G>A
  hgvsp: ENSP00000369299.3:p.Arg239Gln
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1428G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13117C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.620G>A
  hgvsp: ENSP00000393250.1:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg239Gln
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

11-5719745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719745
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719745
    reference: chr 11
allele count: 2
allele frequency: 1.672996168838773e-5
allele num: 119546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13121C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.389G>A
  hgvsp: ENSP00000388994.1:p.Val131Ile
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18277C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1432G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.624G>A
  hgvsp: ENST00000454828.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.720G>A
  hgvsp: ENST00000379965.3:c.720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4190
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val131Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

11-5719746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719746
    reference: chr 11
allele count: 7
allele frequency: 5.859701992298677e-5
allele num: 119460
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.721T>C
  hgvsp: ENST00000379965.3:c.721T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.390T>C
  hgvsp: ENSP00000388994.1:p.Val131Ala
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13122A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18278A>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.625T>C
  hgvsp: ENST00000454828.1:c.625T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1433T>C
  variant of: http://identifiers.org/hgnc/16379
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val131Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-5719749-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719749
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18282dupC
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13126dupC
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1440dupG
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.728dupG
  hgvsp: ENSP00000369299.3:p.Ser244IlefsTer11
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.632dupG
  hgvsp: ENSP00000393250.1:p.Ser212IlefsTer11
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.397dupG
  hgvsp: ENSP00000388994.1:p.Ile134AspfsTer4
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser244IlefsTer11
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

11-5719749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719749
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719749
    reference: chr 11
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13125T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1436A>G
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.724A>G
  hgvsp: ENSP00000369299.3:p.Arg242Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18281T>C
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.628A>G
  hgvsp: ENSP00000393250.1:p.Arg210Gly
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.393A>G
  hgvsp: ENSP00000388994.1:p.Glu132Gly
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4164
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg242Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

11-5719750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
allele count: 1
allele frequency: 8.448371998715848e-6
allele num: 118366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1437G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.629G>A
  hgvsp: ENSP00000393250.1:p.Arg210Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.394G>A
  hgvsp: ENST00000414897.1:c.394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.725G>A
  hgvsp: ENSP00000369299.3:p.Arg242Lys
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13126C>T
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18282C>T
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg242Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

11-5719750-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
allele count: 60535
allele frequency: 5.114221989422638e-1
allele num: 118366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.629G>C
  hgvsp: ENSP00000393250.1:p.Arg210Thr
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13126C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1437G>C
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18282C>G
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.394G>C
  hgvsp: ENSP00000388994.1:p.Glu132Asp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.725G>C
  hgvsp: ENSP00000369299.3:p.Arg242Thr
  variant of: http://identifiers.org/hgnc/16379
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 1884
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 4.75e1
  variant carriers: 2656
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.25e1
  variant carriers: 7294
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 2479
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 2.75e1
  variant carriers: 7183
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 4026
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 844
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 1410
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 2.25e1
  variant carriers: 5354
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 1719
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 1136
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 5677
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.25e1
  variant carriers: 414
genotype quality: GenotypeQuality
  all individuals: 38034
  bin: 9.75e1
  variant carriers: 37000
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.25e1
  variant carriers: 526
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.75e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 9435
  bin: 6.25e1
  variant carriers: 739
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 1055
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 544
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 66
hgvs: p.Arg242Thr
num of homozygotes: 16124
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

11-5719750-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719750
    reference: chr 11
allele count: 4
allele frequency: 3.379348799486339e-5
allele num: 118366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1437G>T
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13126C>A
  variant of: http://identifiers.org/hgnc/16276
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000369299
  ensembl transcript: ENST00000379965
  gene symbol: TRIM22
  hgvsc: ENST00000379965.3:c.725G>T
  hgvsp: ENSP00000369299.3:p.Arg242Met
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.629G>T
  hgvsp: ENSP00000393250.1:p.Arg210Met
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.394G>T
  hgvsp: ENSP00000388994.1:p.Glu132Asp
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000388031
  ensembl transcript: ENST00000412903
  gene symbol: TRIM5
  hgvsc: ENST00000412903.1:c.-61-18282C>A
  variant of: http://identifiers.org/hgnc/16276
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38034
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg242Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-5719751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5719751
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 5719751
    reference: chr 11
allele count: 2
allele frequency: 1.762487221967641e-5
allele num: 113476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132274
  ensembl transcript: ENST00000480395
  gene symbol: TRIM22
  hgvsc: ENST00000480395.1:n.1438G>A
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000393250
  ensembl transcript: ENST00000454828
  gene symbol: TRIM22
  hgvsc: ENST00000454828.1:c.630G>A
  hgvsp: ENST00000454828.1:c.630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132274
  ensembl protein: ENSP00000388994
  ensembl transcript: ENST00000414897
  gene symbol: TRIM22
  hgvsc: ENST00000414897.1:c.395G>A
  hgvsp: ENSP00000388994.1:p.Gly133Arg
  variant of: http://identifiers.org/hgnc/16379
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132256
  ensembl protein: ENSP00000369366
  ensembl transcript: ENST00000380027
  gene symbol: TRIM5
  hgvsc: ENST00000380027.1:c.-440-13127C>T
  variant of: http://identifiers.org/hgnc/16276
canonical: false
consequence: missense
filter: PASS
hgvs: p.Gly133Arg
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 7294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.974333662388944e-5
allele num: 50650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.92e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

DP
type: SiteQuality
SIO_000300: 9.44567e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4648
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7576
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.969397513547975e-5
allele num: 12548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 9.22006e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.513e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 5.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 8155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5491
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.686340640809444e-4
allele num: 5930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 8.58905e5

GenotypeQuality
all individuals: 1565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15424
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.654410053525716e-4
allele num: 8594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.884e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.897723e6

GenotypeQuality
all individuals: 1764
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517266492686776e-5
allele num: 65908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.355e0

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 1.904616e6

GenotypeQuality
all individuals: 1157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14005
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.932491625869621e-4
allele num: 15524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.609e0

FS
type: SiteQuality
SIO_000300: 2.355e0

QD
type: SiteQuality
SIO_000300: 1.051e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.913964e6

GenotypeQuality
all individuals: 552
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6454
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 15346
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1905
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15116
bin: 9.75e1
variant carriers: 1925

GenotypeQuality
all individuals: 2742
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3770
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1345
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 76
allele frequency: 6.586930143872421e-3
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 15
allele frequency: 1.716247139588101e-2
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1734
allele frequency: 2.62902541087998e-2
allele num: 65956
num of homozygotes: 37

South Asian
type: Population
allele count: 53
allele frequency: 3.417590920815063e-3
allele num: 15508
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 4.158868787689748e-3
allele num: 9618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 70
allele frequency: 1.059001512859304e-2
allele num: 6610
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

DP
type: SiteQuality
SIO_000300: 1.925967e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 1.585e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6716
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13779
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16381
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.889e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

DP
type: SiteQuality
SIO_000300: 1.922546e6

VQSLOD
type: SiteQuality
SIO_000300: -1.079e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

QD
type: SiteQuality
SIO_000300: 6.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

GenotypeQuality
all individuals: 19346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4981
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

DP
type: SiteQuality
SIO_000300: 1.96511e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 2.312e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5001
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.264879087833605e-5
allele num: 15962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
type: SiteQuality
SIO_000300: 1.652e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.966723e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2955
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.969506e6

QD
type: SiteQuality
SIO_000300: 1.248e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

FS
type: SiteQuality
SIO_000300: 4.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.203141144864642e-3
allele num: 9678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.971235e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 2.601e0

QD
type: SiteQuality
SIO_000300: 1.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13859
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029866117404737e-4
allele num: 9710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.97969e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeQuality
all individuals: 13870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20407
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.98499e6

FS
type: SiteQuality
SIO_000300: 2.022e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

GenotypeQuality
all individuals: 13897
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 4215
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 8.683999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.98919e6

QD
type: SiteQuality
SIO_000300: 1.196e1

MQ
type: SiteQuality
SIO_000300: 6.123e1

GenotypeQuality
all individuals: 13917
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496701451361401e-5
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.637143519591931e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.992736e6

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 20567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
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GenotypeQuality
all individuals: 5143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.992723e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 9.864000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: -5.492e-1

QD
type: SiteQuality
SIO_000300: 1.097e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 4238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2108
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 13924
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.717e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.993208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5149
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.993318e6

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele frequency: 1.211387038158692e-4
allele num: 16510
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.553e0

BaseQRankSum
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SIO_000300: -1.378e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.493330935467435e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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MQ
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SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 1.993907e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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SIO_000300: -2.444e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 16512
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.505703422053232e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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VQSLOD
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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Other
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.448e0

FS
type: SiteQuality
SIO_000300: 9.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQ
type: SiteQuality
SIO_000300: 5.008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

QD
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SIO_000300: 6.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

DP
type: SiteQuality
SIO_000300: 1.994381e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.994564e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 5.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.648e0

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.505703422053232e-4
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
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SIO_000300: 1.995058e6

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 26
allele frequency: 2.246802627030764e-3
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

DP
type: SiteQuality
SIO_000300: 1.995979e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 1.995348e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.978e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele num: 8626
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Other
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13963
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056201550387597e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.668e0

DP
type: SiteQuality
SIO_000300: 1.996601e6

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 5.067e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

GenotypeQuality
all individuals: 4261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13962
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.637143519591931e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.996654e6

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.996571e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 1.025e0

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.495e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.996803e6

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 2079
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7382
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5050
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 219
allele frequency: 3.281882211898696e-3
allele num: 66730
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058361052313275e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 634
allele frequency: 6.468067741277291e-2
allele num: 9802
num of homozygotes: 25

South Asian
type: Population
allele count: 322
allele frequency: 1.950096899224806e-2
allele num: 16512
num of homozygotes: 7

Latino
type: Population
allele count: 53
allele frequency: 4.579229307067566e-3
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.111111111111111e-2
allele num: 900
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.326e1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 1.127e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 2.045666e6

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-2

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49288176232579e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 2.02712e6

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

GenotypeQuality
all individuals: 20039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14332
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
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variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.639e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.233e0

FS
type: SiteQuality
SIO_000300: 7.782e0

MQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

QD
type: SiteQuality
SIO_000300: 6.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.027353e6

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20035
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.286e-1

DP
type: SiteQuality
SIO_000300: 2.027534e6

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

FS
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.524e1

GenotypeQuality
all individuals: 14399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30853
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 1.144e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.764e1

DP
type: SiteQuality
SIO_000300: 2.838242e6

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2238
bin: 8.25e1
variant carriers: 69

GenotypeQuality
all individuals: 1032
bin: 8.75e1
variant carriers: 74

GenotypeQuality
all individuals: 30853
bin: 9.75e1
variant carriers: 25751

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1443
bin: 9.25e1
variant carriers: 112

Other
type: Population
allele count: 211
allele frequency: 2.344444444444445e-1
allele num: 900
num of homozygotes: 28

Latino
type: Population
allele count: 4387
allele frequency: 3.804856895056375e-1
allele num: 11530
num of homozygotes: 834

East Asian
type: Population
allele count: 2558
allele frequency: 2.979962721342032e-1
allele num: 8584
num of homozygotes: 396

South Asian
type: Population
allele count: 5273
allele frequency: 3.194208868427429e-1
allele num: 16508
num of homozygotes: 899

European (Finnish)
type: Population
allele count: 1024
allele frequency: 1.548699334543255e-1
allele num: 6612
num of homozygotes: 81

African
type: Population
allele count: 3193
allele frequency: 3.258163265306123e-1
allele num: 9800
num of homozygotes: 509

European (Non-Finnish)
type: Population
allele count: 13825
allele frequency: 2.073646317684116e-1
allele num: 66670
num of homozygotes: 1425

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
SIO_000300: 1.764e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 1.144e0

DP
type: SiteQuality
SIO_000300: 2.838242e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7903
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4737
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.769e1

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

FS
type: SiteQuality
SIO_000300: 3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.951e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.93e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.052165e6

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4731
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.051498e6

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
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variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 7852
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variant carriers: 0

GenotypeQuality
all individuals: 4718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 11162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.051032e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7840
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 11156
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.26e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.050284e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.401e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 127
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GenotypeQuality
all individuals: 11153
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1600
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GenotypeQuality
all individuals: 3477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 2.049594e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 4651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 3566
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.842e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 5.496e0

DP
type: SiteQuality
SIO_000300: 2.04506e6

GenotypeQuality
all individuals: 1587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 11138
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

FS
type: SiteQuality
SIO_000300: 5.859e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.124e0

DP
type: SiteQuality
SIO_000300: 2.043196e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.324e1

VQSLOD
type: SiteQuality
SIO_000300: -2.895e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.040226e6

FS
type: SiteQuality
SIO_000300: 5.061e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.455e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11136
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999670036296008e-5
allele num: 66674
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2413e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
SIO_000300: 6.91e0

DP
type: SiteQuality
SIO_000300: 2.039435e6

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11130
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.192e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 1.582e1

DP
type: SiteQuality
SIO_000300: 2.031176e6

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.169e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

QD
type: SiteQuality
SIO_000300: 6.74e0

DP
type: SiteQuality
SIO_000300: 2.028231e6

FS
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 7391
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11404
bin: 9.75e1
variant carriers: 479

GenotypeQuality
all individuals: 2175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.033434650455927e-3
allele num: 16450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 474
allele frequency: 5.514192647743137e-2
allele num: 8596
num of homozygotes: 9

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.316e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.87e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 2.757e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 2.027853e6

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002642325246217e-5
allele num: 66608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.452e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 1.7601e1

DP
type: SiteQuality
SIO_000300: 2.018898e6

QD
type: SiteQuality
SIO_000300: 9.51e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 3449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007449237053947e-5
allele num: 66584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.845018450184502e-3
allele num: 9756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.490401396160559e-4
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.016857e6

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeQuality
all individuals: 3187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1886e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.893e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 2.012009e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10957
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.167763157894736e-4
allele num: 9728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.993633e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.782342871117633e-4
allele num: 16356
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.887e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

FS
type: SiteQuality
SIO_000300: 1.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

DP
type: SiteQuality
SIO_000300: 1.980788e6

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10983
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 846
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-4
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.123259598577543e-4
allele num: 66364
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.268367587999055e-4
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.670622782332069e-4
allele num: 16346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.549e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 2.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.976202e6

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10950
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225039813793948e-4
allele num: 16326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.362000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.825e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.970048e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
all individuals: 3022
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10951
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18714
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.055520371543171e-4
allele num: 66318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 4.867e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 1.966901e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 6327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17312
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.949346697691069e-5
allele num: 11174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

FS
type: SiteQuality
SIO_000300: 2.965e0

QD
type: SiteQuality
SIO_000300: 9.02e0

DP
type: SiteQuality
SIO_000300: 1.962094e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10951
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.033057851239669e-4
allele num: 9680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

DP
type: SiteQuality
SIO_000300: 1.962094e6

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 9.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38034
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.215362177929023e-4
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

QD
type: SiteQuality
SIO_000300: 2.032e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

FS
type: SiteQuality
SIO_000300: 3.193e0

DP
type: SiteQuality
SIO_000300: 2.251418e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 36

GenotypeQuality
all individuals: 1578
bin: 2.25e1
variant carriers: 87

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 51

GenotypeQuality
all individuals: 2106
bin: 6.75e1
variant carriers: 823

GenotypeQuality
all individuals: 1212
bin: 8.25e1
variant carriers: 996

GenotypeQuality
all individuals: 1386
bin: 7.75e1
variant carriers: 967

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 61

GenotypeQuality
all individuals: 562
bin: 5.75e1
variant carriers: 353

African
type: Population
allele count: 3735
allele frequency: 3.864059590316574e-1
allele num: 9666
num of homozygotes: 692

South Asian
type: Population
allele count: 9096
allele frequency: 5.597538461538462e-1
allele num: 16250
num of homozygotes: 2542

European (Non-Finnish)
type: Population
allele count: 37600
allele frequency: 5.711334568763861e-1
allele num: 65834
num of homozygotes: 10646

European (Finnish)
type: Population
allele count: 4048
allele frequency: 6.23921085080148e-1
allele num: 6488
num of homozygotes: 1265

East Asian
type: Population
allele count: 1633
allele frequency: 1.984686436558094e-1
allele num: 8228
num of homozygotes: 163

Latino
type: Population
allele count: 3960
allele frequency: 3.596730245231607e-1
allele num: 11010
num of homozygotes: 688

Other
type: Population
allele count: 463
allele frequency: 5.202247191011236e-1
allele num: 890
num of homozygotes: 128

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

FS
type: SiteQuality
SIO_000300: 3.193e0

QD
type: SiteQuality
SIO_000300: 2.032e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 2.251418e6

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.07588783911049e-5
allele num: 65834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

DP
type: SiteQuality
SIO_000300: 2.251418e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 3.193e0

QD
type: SiteQuality
SIO_000300: 2.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1