11-46671896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46671896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46671896
    reference: chr 11
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.780+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.329+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.221+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.413+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.458+29C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/11-46671912-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46671912
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46671912
    reference: chr 11
allele count: 2
allele frequency: 1.66118475696867e-5
allele num: 120396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.413+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.221+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.780+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.458+45C>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.329+45C>A
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

11-46677734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677734
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677734
    reference: chr 11
allele count: 3934
allele frequency: 3.251669642266746e-2
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-49C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 5.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 4.25e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 2.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.75e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 3.25e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 3.75e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
num of homozygotes: 272
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-46677744-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677744
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677744
    reference: chr 11
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-39A>C
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

11-46677753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677753
    reference: chr 11
allele count: 8
allele frequency: 6.603493247928155e-5
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-30G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

11-46677753-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677753
    reference: chr 11
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-30G>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-46677755-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677755
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677755
    reference: chr 11
allele count: 7
allele frequency: 5.777865821447438e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-28A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-28A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-46677756-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677756
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677756
    reference: chr 11
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-27A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

11-46677758-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677758
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677758
    reference: chr 11
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-25A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

11-46677765-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677766
    reference: chr 11
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-12dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-12dupT
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-46677768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677768
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677768
    reference: chr 11
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-15T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-15T>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

11-46677772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677772
    reference: chr 11
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-11C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-11C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-46677772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677772
    reference: chr 11
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-11C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-11C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-46677779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677779
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677779
    reference: chr 11
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.222-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.330-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.781-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.414-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.459-4A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.459-4A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-46677810-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677810
    reference: chr 11
allele count: 6
allele frequency: 4.948616861587186e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.486T>A
  hgvsp: ENSP00000404900.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.486T>A
  hgvsp: ENSP00000400642.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.249T>A
  hgvsp: ENSP00000434390.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.486T>A
  hgvsp: ENSP00000432412.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.486T>A
  hgvsp: ENSP00000378919.3:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.486T>A
  hgvsp: ENSP00000433756.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.808T>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.486T>A
  hgvsp: ENSP00000433543.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.441T>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.486T>A
  hgvsp: ENSP00000352500.4:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.357T>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.486T>A
  hgvsp: ENSP00000431974.1:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.486T>A
  hgvsp: ENSP00000310321.4:p.Ser162Arg
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser162Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

11-46677819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677819
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677819
    reference: chr 11
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.495A>G
  hgvsp: ENST00000451945.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.495A>G
  hgvsp: ENST00000528494.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.495A>G
  hgvsp: ENST00000529655.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.495A>G
  hgvsp: ENST00000434074.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.258A>G
  hgvsp: ENST00000530500.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.495A>G
  hgvsp: ENST00000395549.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.495A>G
  hgvsp: ENST00000524625.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.366A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.495A>G
  hgvsp: ENST00000359513.4:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.495A>G
  hgvsp: ENST00000526508.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.495A>G
  hgvsp: ENST00000312040.4:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.450A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.817A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly165Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

11-46677827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677827
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677827
    reference: chr 11
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.458T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+4T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+4T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.499+4T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

11-46677832-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677832
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677832
    reference: chr 11
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.463C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+9C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+9C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

11-46677835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677835
    reference: chr 11
allele count: 9
allele frequency: 7.425620039273279e-5
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.466C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+12C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

11-46677836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677836
    reference: chr 11
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.467G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+13G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+13G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-46677845-ACAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677842
    reference: chr 11
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+24_370+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+24_262+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+24_821+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.478_480delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+24_499+26delATC
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: ACAT
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-46677849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677849
    reference: chr 11
allele count: 2
allele frequency: 1.651118632873772e-5
allele num: 121130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.480C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+26C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-46677849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677849
    reference: chr 11
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.480C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+26C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-46677850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677850
    reference: chr 11
allele count: 5
allele frequency: 4.127660277048558e-5
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.481G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+27G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+27G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

11-46677853-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677853
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677853
    reference: chr 11
allele count: 53
allele frequency: 4.375753372632552e-4
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.484G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+30G>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+30G>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

11-46677865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677865
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677865
    reference: chr 11
allele count: 3
allele frequency: 2.477700693756194e-5
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.496C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+42C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+42C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

11-46677866-TCCTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677861
    reference: chr 11
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+45_821+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+45_370+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+45_262+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.499_503delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+45_499+49delCTAAC
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: TCCTAA
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-46677867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46677867
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46677867
    reference: chr 11
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.370+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.821+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528145
  gene symbol: ATG13
  hgvsc: ENST00000528145.1:n.498C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.262+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.499+44C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

11-46678596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678596
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678596
    reference: chr 11
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.96G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.94G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-49G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20360
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-46678607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678607
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.105C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.107C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-38C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-46678620-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678620
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678620
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.120G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.118G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.11G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-25G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-25G>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

11-46678622-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678622
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678622
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.120T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.122T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.13T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-23T>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-23T>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

11-46678628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678628
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678628
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.19T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.128T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.126T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-17T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

11-46678632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678632
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678632
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.130T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.23T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.132T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-13T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

11-46678638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678638
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678638
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.138C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.29C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-7C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.136C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-7C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.500-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-46678641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678641
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678641
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.141C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.822-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.263-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.371-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.32C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.139C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.500-4C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.500-4C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-46678653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678653
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678653
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.44A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.508A>G
  hgvsp: ENSP00000310321.4:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.508A>G
  hgvsp: ENSP00000400642.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.508A>G
  hgvsp: ENSP00000404900.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.508A>G
  hgvsp: ENSP00000352500.4:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.508A>G
  hgvsp: ENSP00000433756.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.508A>G
  hgvsp: ENSP00000432412.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.830A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.508A>G
  hgvsp: ENSP00000431974.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.151A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.508A>G
  hgvsp: ENSP00000433543.1:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.271A>G
  hgvsp: ENSP00000434390.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.379A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.508A>G
  hgvsp: ENSP00000378919.3:p.Thr170Ala
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.153A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr170Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-46678670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678670
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678670
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.525A>G
  hgvsp: ENST00000359513.4:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.525A>G
  hgvsp: ENST00000528494.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.525A>G
  hgvsp: ENST00000529655.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.168A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.525A>G
  hgvsp: ENST00000526508.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.170A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.847A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.288A>G
  hgvsp: ENST00000530500.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.525A>G
  hgvsp: ENST00000395549.3:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.525A>G
  hgvsp: ENST00000524625.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.525A>G
  hgvsp: ENST00000312040.4:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.525A>G
  hgvsp: ENST00000451945.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.61A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.396A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.525A>G
  hgvsp: ENST00000434074.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr175Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

11-46678674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678674
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.529G>A
  hgvsp: ENSP00000352500.4:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.529G>A
  hgvsp: ENSP00000400642.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.400G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.529G>A
  hgvsp: ENSP00000431974.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.529G>A
  hgvsp: ENSP00000404900.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.172G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.851G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.292G>A
  hgvsp: ENSP00000434390.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.529G>A
  hgvsp: ENSP00000433756.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.529G>A
  hgvsp: ENSP00000310321.4:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.174G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.529G>A
  hgvsp: ENSP00000433543.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.529G>A
  hgvsp: ENSP00000432412.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.529G>A
  hgvsp: ENSP00000378919.3:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.65G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly177Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

11-46678692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678692
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678692
    reference: chr 11
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.547A>G
  hgvsp: ENSP00000378919.3:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.547A>G
  hgvsp: ENSP00000433756.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.547A>G
  hgvsp: ENSP00000310321.4:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.310A>G
  hgvsp: ENSP00000434390.1:p.Ile104Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.547A>G
  hgvsp: ENSP00000404900.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.869A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.547A>G
  hgvsp: ENSP00000400642.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.547A>G
  hgvsp: ENSP00000433543.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.547A>G
  hgvsp: ENSP00000432412.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.547A>G
  hgvsp: ENSP00000352500.4:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.192A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.418A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.547A>G
  hgvsp: ENSP00000431974.1:p.Ile183Val
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.190A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.83A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ile183Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-46678694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678694
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678694
    reference: chr 11
allele count: 13
allele frequency: 1.070875481893967e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.85C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.549C>T
  hgvsp: ENST00000524625.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.549C>T
  hgvsp: ENST00000359513.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.192C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.871C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.549C>T
  hgvsp: ENST00000528494.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.194C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.312C>T
  hgvsp: ENST00000530500.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.549C>T
  hgvsp: ENST00000312040.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.549C>T
  hgvsp: ENST00000529655.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.549C>T
  hgvsp: ENST00000434074.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.549C>T
  hgvsp: ENST00000526508.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.549C>T
  hgvsp: ENST00000451945.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.420C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.549C>T
  hgvsp: ENST00000395549.3:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile183Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

11-46678703-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678703
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678703
    reference: chr 11
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.558T>C
  hgvsp: ENST00000529655.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.558T>C
  hgvsp: ENST00000434074.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.201T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.321T>C
  hgvsp: ENST00000530500.1:c.321T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.558T>C
  hgvsp: ENST00000524625.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.558T>C
  hgvsp: ENST00000359513.4:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.429T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.558T>C
  hgvsp: ENST00000526508.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.203T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.94T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.558T>C
  hgvsp: ENST00000451945.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.558T>C
  hgvsp: ENST00000395549.3:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.558T>C
  hgvsp: ENST00000528494.1:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.558T>C
  hgvsp: ENST00000312040.4:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.880T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser186Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

11-46678733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678733
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678733
    reference: chr 11
allele count: 4
allele frequency: 3.298588204248581e-5
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.588G>A
  hgvsp: ENSP00000400642.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.351G>A
  hgvsp: ENSP00000434390.1:p.Met117Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.588G>A
  hgvsp: ENSP00000352500.4:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.588G>A
  hgvsp: ENSP00000310321.4:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.588G>A
  hgvsp: ENSP00000433756.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.588G>A
  hgvsp: ENSP00000433543.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.231G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.910G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.233G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.588G>A
  hgvsp: ENSP00000432412.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.459G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000378919
  ensembl transcript: ENST00000395549
  gene symbol: ATG13
  hgvsc: ENST00000395549.3:c.588G>A
  hgvsp: ENSP00000378919.3:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.124G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.588G>A
  hgvsp: ENSP00000431974.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.588G>A
  hgvsp: ENSP00000404900.1:p.Met196Ile
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met196Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

11-46678748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678748
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678748
    reference: chr 11
allele count: 91
allele frequency: 7.516312876848104e-4
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.139A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+7A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+7A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20245
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20201
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.596+7A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

11-46678754-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678754
    reference: chr 11
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.145C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+13C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-46678766-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678766
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678766
    reference: chr 11
allele count: 6
allele frequency: 4.986702127659574e-5
allele num: 120320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.157A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+25A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+25A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19263
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

11-46678777-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678777
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678777
    reference: chr 11
allele count: 1
allele frequency: 8.384338056510439e-6
allele num: 119270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.168C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+36C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+36C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-46678777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678777
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678777
    reference: chr 11
allele count: 196
allele frequency: 1.643330259076046e-3
allele num: 119270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.168C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+36C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+36C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15137
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

11-46678778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678778
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678778
    reference: chr 11
allele count: 7
allele frequency: 5.877710044166793e-5
allele num: 119094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.169G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+37G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-46678780-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678780
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678780
    reference: chr 11
allele count: 1
allele frequency: 8.400537634408602e-6
allele num: 119040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.171A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+39A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+39A>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

11-46678787-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678787
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678787
    reference: chr 11
allele count: 1
allele frequency: 8.494444633209881e-6
allele num: 117724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.178A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+46A>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+46A>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

11-46678790-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678791
    reference: chr 11
allele count: 3
allele frequency: 2.604392742425558e-5
allele num: 115190
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+49_359+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+49_241+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.181_182insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+49_918+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+49_239+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+49_596+50insA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+49_467+50insA
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-46678790-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678791
    reference: chr 11
allele count: 4
allele frequency: 3.47252365656741e-5
allele num: 115190
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.189dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+57dupT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+57dupT
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

11-46678790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678790
    reference: chr 11
allele count: 1
allele frequency: 8.681309141418526e-6
allele num: 115190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.181G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+49G>T
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

11-46678790-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46678790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46678789
    reference: chr 11
allele count: 2
allele frequency: 1.736261828283705e-5
allele num: 115190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.189delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.239+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.241+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.359+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.467+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.918+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.596+57delT
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: GT
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

11-46679027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679027
    reference: chr 11
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.418T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-47T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-46679041-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679041
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679041
    reference: chr 11
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.432A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-33A>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-33A>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-46679047-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679047
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679048
    reference: chr 11
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.439dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-26dupA
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-26dupA
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15056
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

11-46679049-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679049
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679049
    reference: chr 11
allele count: 4
allele frequency: 3.299458888742246e-5
allele num: 121232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.440C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-25C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-25C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

11-46679052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679052
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679052
    reference: chr 11
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.443G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-22G>A
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-46679054-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679054
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679054
    reference: chr 11
allele count: 4
allele frequency: 3.298914657077821e-5
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.445A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-20A>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-20A>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-46679057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679057
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679057
    reference: chr 11
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.448T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-17T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-17T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

11-46679059-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679059
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679059
    reference: chr 11
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.242-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.450C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.468-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.919-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.360-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.240-15C>G
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.597-15C>G
  variant of: http://identifiers.org/hgnc/29091
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

11-46679088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679088
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679088
    reference: chr 11
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.611C>T
  hgvsp: ENSP00000433756.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.611C>T
  hgvsp: ENSP00000310321.4:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.256C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.933C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.611C>T
  hgvsp: ENSP00000433543.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.374C>T
  hgvsp: ENSP00000434390.1:p.Thr125Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.611C>T
  hgvsp: ENSP00000432412.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.479C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.611C>T
  hgvsp: ENSP00000431974.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.611C>T
  hgvsp: ENSP00000352500.4:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.482C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.254C>T
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.611C>T
  hgvsp: ENSP00000400642.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.611C>T
  hgvsp: ENSP00000404900.1:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr204Ile
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

11-46679112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679112
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679112
    reference: chr 11
allele count: 3
allele frequency: 2.484101748807631e-5
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000400642
  ensembl transcript: ENST00000434074
  gene symbol: ATG13
  hgvsc: ENST00000434074.1:c.635T>C
  hgvsp: ENSP00000400642.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433756
  ensembl transcript: ENST00000529655
  gene symbol: ATG13
  hgvsc: ENST00000529655.1:c.635T>C
  hgvsp: ENSP00000433756.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000433543
  ensembl transcript: ENST00000524625
  gene symbol: ATG13
  hgvsc: ENST00000524625.1:c.635T>C
  hgvsp: ENSP00000433543.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000310321
  ensembl transcript: ENST00000312040
  gene symbol: ATG13
  hgvsc: ENST00000312040.4:c.635T>C
  hgvsp: ENSP00000310321.4:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.398T>C
  hgvsp: ENSP00000434390.1:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000352500
  ensembl transcript: ENST00000359513
  gene symbol: ATG13
  hgvsc: ENST00000359513.4:c.635T>C
  hgvsp: ENSP00000352500.4:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528984
  gene symbol: ATG13
  hgvsc: ENST00000528984.1:n.280T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000404900
  ensembl transcript: ENST00000451945
  gene symbol: ATG13
  hgvsc: ENST00000451945.1:c.635T>C
  hgvsp: ENSP00000404900.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000527907
  gene symbol: ATG13
  hgvsc: ENST00000527907.1:n.278T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.635T>C
  hgvsp: ENSP00000431974.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.635T>C
  hgvsp: ENSP00000432412.1:p.Ile212Thr
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.506T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000528704
  gene symbol: ATG13
  hgvsc: ENST00000528704.1:n.503T>C
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000534610
  gene symbol: ATG13
  hgvsc: ENST00000534610.1:n.957T>C
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile212Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

11-46679129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46679129
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 46679129
    reference: chr 11
allele count: 10
allele frequency: 8.379420144126027e-5
allele num: 119340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000434390
  ensembl transcript: ENST00000530500
  gene symbol: ATG13
  hgvsc: ENST00000530500.1:c.415C>T
  hgvsp: ENSP00000434390.1:p.Arg139Cys
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000431974
  ensembl transcript: ENST00000526508
  gene symbol: ATG13
  hgvsc: ENST00000526508.1:c.652C>T
  hgvsp: ENSP00000431974.1:p.Arg218Cys
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175224
  ensembl protein: ENSP00000432412
  ensembl transcript: ENST00000528494
  gene symbol: ATG13
  hgvsc: ENST00000528494.1:c.652C>T
  hgvsp: ENSP00000432412.1:p.Arg218Cys
  variant of: http://identifiers.org/hgnc/29091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175224
  ensembl transcript: ENST00000525850
  gene symbol: ATG13
  hgvsc: ENST00000525850.1:n.523C>T
  variant of: http://identifiers.org/hgnc/29091
canonical: true
consequence: missense
filter: PASS
hgvs: p.Arg218Cys
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 1263
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7775
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191950464396285e-5
allele num: 16150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.64e-1

FS
type: SiteQuality
SIO_000300: 5.1361e1

VQSLOD
type: SiteQuality
SIO_000300: -1.405e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 2.529555e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 3.307e1

MQ
type: SiteQuality
SIO_000300: 5.764e1

GenotypeDepth
all individuals: 4196
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8435
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34711
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 975
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013228071232712e-5
allele num: 66374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.336e0

FS
type: SiteQuality
SIO_000300: 1.1111e1

DP
type: SiteQuality
SIO_000300: 2.514564e6

QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeDepth
all individuals: 702
bin: 7.25e1
variant carriers: 20

GenotypeDepth
all individuals: 2257
bin: 5.75e1
variant carriers: 79

GenotypeDepth
all individuals: 5259
bin: 4.75e1
variant carriers: 258

GenotypeQuality
all individuals: 2194
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1041
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3308
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3435
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3464
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 971
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 33406
bin: 9.75e1
variant carriers: 3510

GenotypeQuality
all individuals: 5034
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 3482
bin: 6.75e1
variant carriers: 18

Latino
type: Population
allele count: 49
allele frequency: 4.238754325259515e-3
allele num: 11560
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.664145234493192e-3
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 536
allele frequency: 8.057969271475391e-3
allele num: 66518
num of homozygotes: 3

East Asian
type: Population
allele count: 719
allele frequency: 8.354636300255636e-2
allele num: 8606
num of homozygotes: 34

African
type: Population
allele count: 19
allele frequency: 1.831501831501832e-3
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 2574
allele frequency: 1.56855575868373e-1
allele num: 16410
num of homozygotes: 231

Other
type: Population
allele count: 26
allele frequency: 2.869757174392936e-2
allele num: 906
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.026e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.006e0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.676143e6

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.481e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeDepth
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 461
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31293
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.687504e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

QD
type: SiteQuality
SIO_000300: 1.823e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 3038
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31323
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.263547938860583e-4
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

DP
type: SiteQuality
SIO_000300: 2.698665e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

GenotypeDepth
all individuals: 2267
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5270
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31323
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 6.054315862307559e-4
allele num: 11562
num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Other
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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QD
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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African
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MQ
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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Other
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East Asian
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African
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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FS
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BaseQRankSum
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: 5.77e-1

FS
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QD
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 3.637686431429611e-4
allele num: 16494
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele count: 1
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allele num: 10360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Finnish)
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MQRankSum
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MQ
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VQSLOD
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DP
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66638
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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allele frequency: 2.896312029349295e-4
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.00360144057623e-5
allele num: 66640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
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SIO_000300: 2.702571e6

MQ
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SIO_000300: 5.975e1

ReadPosRankSum
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SIO_000300: 2.18e-1

MQRankSum
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SIO_000300: 3.7e-1

BaseQRankSum
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SIO_000300: 2.7e0

ClippingRankSum
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SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 4.533e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele num: 16486
num of homozygotes: 0

Other
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allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
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MQRankSum
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SIO_000300: 1.24e0

ClippingRankSum
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SIO_000300: 1.39e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 2.76e-1

BaseQRankSum
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SIO_000300: 2.86e0

QD
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SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 2.7023e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 8.33e-1

ReadPosRankSum
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SIO_000300: 6.73e-1

BaseQRankSum
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QD
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DP
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MQ
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SIO_000300: 5.858e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -1.571e0

VQSLOD
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SIO_000300: 3.93e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.31e1

InbreedingCoeff
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SIO_000300: 3.0e-4

FS
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SIO_000300: 2.083e0

VQSLOD
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BaseQRankSum
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SIO_000300: 2.02e0

MQRankSum
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SIO_000300: 7.42e-1

ClippingRankSum
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SIO_000300: -1.057e0

MQ
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SIO_000300: 5.855e1

DP
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SIO_000300: 2.699923e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

MQRankSum
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FS
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.508634930169695e-5
allele num: 66590
num of homozygotes: 0

InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 4.586362062997577e-3
allele num: 11556
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Other
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African
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European (Non-Finnish)
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South Asian
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East Asian
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BaseQRankSum
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MQ
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

East Asian
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South Asian
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African
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 3.843936190659235e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -5.14e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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FS
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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BaseQRankSum
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FS
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DP
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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African
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East Asian
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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Latino
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South Asian
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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VQSLOD
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Latino
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African
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VQSLOD
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MQRankSum
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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African
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Latino
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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European (Finnish)
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Latino
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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QD
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FS
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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allele num: 8652
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African
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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East Asian
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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MQRankSum
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.503714174009804e-5
allele num: 66502
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.070294784580499e-5
allele num: 66150
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 46

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 7
allele frequency: 6.171751013930523e-4
allele num: 11342
num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 8.397312859884837e-4
allele num: 8336
num of homozygotes: 0

European (Finnish)
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allele count: 17
allele frequency: 2.585158150851581e-3
allele num: 6576
num of homozygotes: 0

South Asian
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allele count: 14
allele frequency: 8.54283622162558e-4
allele num: 16388
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European (Non-Finnish)
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allele count: 141
allele frequency: 2.152014652014652e-3
allele num: 65520
num of homozygotes: 0

African
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allele frequency: 8.809710258418168e-4
allele num: 10216
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Other
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.829242450997704e-5
allele num: 11326
num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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FS
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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South Asian
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European (Finnish)
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African
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Latino
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Other
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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European (Finnish)
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allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
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East Asian
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allele count: 0
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Other
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VQSLOD
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SIO_000300: 4.77e-1

InbreedingCoeff
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SIO_000300: 1.3e-3

FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 2.27e0

ReadPosRankSum
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SIO_000300: 5.16e-1

MQRankSum
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SIO_000300: 6.3e-2

QD
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DP
type: SiteQuality
SIO_000300: 1.696507e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.755564009891573e-5
allele num: 63084
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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SIO_000300: 1.677145e6

ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.216589861751152e-5
allele num: 10850
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.170376006594382e-5
allele num: 63084
num of homozygotes: 0

African
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allele num: 9930
num of homozygotes: 0

Other
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ReadPosRankSum
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SIO_000300: 1.89e-1

BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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SIO_000300: 5.669999999999999e-1

MQ
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DP
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SIO_000300: 1.677145e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63084
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.22975330176925e-5
allele num: 16052
num of homozygotes: 0

Latino
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.284e0

DP
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SIO_000300: 1.677145e6

MQ
type: SiteQuality
SIO_000300: 6.048e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

African
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East Asian
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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Other
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Latino
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East Asian
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South Asian
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DP
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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Other
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European (Finnish)
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East Asian
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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DP
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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num of homozygotes: 0

Other
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Latino
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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FS
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DP
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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South Asian
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DP
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.433e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

GenotypeDepth
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 640
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12607
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 796
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 918
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7192
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15404
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 2.15061e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1