14-23847602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847602
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847602
    reference: chr 14
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.171T>C
  hgvsp: ENST00000339180.4:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.171T>C
  hgvsp: ENST00000382809.2:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-70T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-638T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.475T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1347T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.171T>C
  hgvsp: ENST00000359320.3:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-906T>C
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6230
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser57Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

14-23847607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847607
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847607
    reference: chr 14
allele count: 36
allele frequency: 2.96545247862403e-4
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.480A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-65A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.176A>G
  hgvsp: ENSP00000344819.4:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.176A>G
  hgvsp: ENSP00000372259.2:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-901A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-633A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.176A>G
  hgvsp: ENSP00000352270.3:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1352A>G
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr59Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

14-23847610-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847610
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847610
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.179T>C
  hgvsp: ENSP00000352270.3:p.Met60Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-630T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.179T>C
  hgvsp: ENSP00000372259.2:p.Met60Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.179T>C
  hgvsp: ENSP00000344819.4:p.Met60Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1355T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.483T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-62T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-898T>C
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met60Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

14-23847614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847614
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847614
    reference: chr 14
allele count: 7
allele frequency: 5.765967611736215e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.183C>T
  hgvsp: ENST00000382809.2:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1359C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-626C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-894C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.183C>T
  hgvsp: ENST00000359320.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-58C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.183C>T
  hgvsp: ENST00000339180.4:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.487C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala61Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

14-23847615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847615
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847615
    reference: chr 14
allele count: 12
allele frequency: 9.884515905833511e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-57G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1360G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.184G>A
  hgvsp: ENSP00000344819.4:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.184G>A
  hgvsp: ENSP00000372259.2:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-893G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.488G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.184G>A
  hgvsp: ENSP00000352270.3:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-625G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19547
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Ala62Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

14-23847615-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847615
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847615
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1360G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.184G>T
  hgvsp: ENSP00000372259.2:p.Ala62Ser
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.184G>T
  hgvsp: ENSP00000352270.3:p.Ala62Ser
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-625G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-893G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.184G>T
  hgvsp: ENSP00000344819.4:p.Ala62Ser
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-57G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.488G>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19547
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala62Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/14-23847616-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847616
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-892C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1361C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-56C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-624C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.185C>A
  hgvsp: ENSP00000372259.2:p.Ala62Glu
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.489C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.185C>A
  hgvsp: ENSP00000352270.3:p.Ala62Glu
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.185C>A
  hgvsp: ENSP00000344819.4:p.Ala62Glu
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala62Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

14-23847616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847616
    reference: chr 14
allele count: 14
allele frequency: 1.153193522347243e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-624C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1361C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-56C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.185C>T
  hgvsp: ENSP00000352270.3:p.Ala62Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.489C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.185C>T
  hgvsp: ENSP00000372259.2:p.Ala62Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-892C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.185C>T
  hgvsp: ENSP00000344819.4:p.Ala62Val
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19552
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala62Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

14-23847619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847619
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847619
    reference: chr 14
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1364C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.188C>T
  hgvsp: ENSP00000344819.4:p.Ala63Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-889C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.188C>T
  hgvsp: ENSP00000352270.3:p.Ala63Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.188C>T
  hgvsp: ENSP00000372259.2:p.Ala63Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.492C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-621C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-53C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4009
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala63Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

14-23847620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847620
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847620
    reference: chr 14
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-620G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-888G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.493G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.189G>A
  hgvsp: ENST00000339180.4:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.189G>A
  hgvsp: ENST00000359320.3:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1365G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-52G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.189G>A
  hgvsp: ENST00000382809.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala63Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

14-23847622-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847622
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847622
    reference: chr 14
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.191T>A
  hgvsp: ENSP00000344819.4:p.Leu64Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-886T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1367T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.191T>A
  hgvsp: ENSP00000352270.3:p.Leu64Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.495T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-50T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.191T>A
  hgvsp: ENSP00000372259.2:p.Leu64Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-618T>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu64Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-23847624-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847624
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847624
    reference: chr 14
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-48C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-884C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.193C>A
  hgvsp: ENSP00000344819.4:p.Leu65Met
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.193C>A
  hgvsp: ENSP00000372259.2:p.Leu65Met
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1369C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.193C>A
  hgvsp: ENSP00000352270.3:p.Leu65Met
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-616C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.497C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu65Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-23847629-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847629
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847626
    reference: chr 14
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.202_204delTTC
  hgvsp: ENSP00000372259.2:p.Phe68del
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-39_127-37delTTC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.202_204delTTC
  hgvsp: ENSP00000344819.4:p.Phe68del
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1378_1380delTTC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-875_127-873delTTC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-607_127-605delTTC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.202_204delTTC
  hgvsp: ENSP00000352270.3:p.Phe68del
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.506_508delTTC
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe68del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: GTTC
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

14-23847641-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847641
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847641
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1386A>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.210A>T
  hgvsp: ENST00000359320.3:c.210A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.210A>T
  hgvsp: ENST00000382809.2:c.210A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-599A>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.514A>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-867A>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.210A>T
  hgvsp: ENST00000339180.4:c.210A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-31A>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr70Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

14-23847645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847645
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847645
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.518G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1390G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.214G>A
  hgvsp: ENSP00000344819.4:p.Ala72Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.214G>A
  hgvsp: ENSP00000372259.2:p.Ala72Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-27G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.214G>A
  hgvsp: ENSP00000352270.3:p.Ala72Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-863G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-595G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala72Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-23847646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847646
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847646
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.215C>T
  hgvsp: ENSP00000352270.3:p.Ala72Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.215C>T
  hgvsp: ENSP00000344819.4:p.Ala72Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.519C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-862C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1391C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.215C>T
  hgvsp: ENSP00000372259.2:p.Ala72Val
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-26C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-594C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19582
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala72Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-23847653-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847653
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847653
    reference: chr 14
allele count: 673
allele frequency: 5.543109412578658e-3
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.222C>G
  hgvsp: ENST00000359320.3:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.222C>G
  hgvsp: ENST00000382809.2:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1398C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.222C>G
  hgvsp: ENST00000339180.4:c.222C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-855C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.526C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-19C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-587C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 9.75e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu74Leu
num of homozygotes: 20
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-23847658-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847658
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847658
    reference: chr 14
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-850T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.227T>A
  hgvsp: ENSP00000344819.4:p.Leu76His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1403T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-14T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.227T>A
  hgvsp: ENSP00000372259.2:p.Leu76His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-582T>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.227T>A
  hgvsp: ENSP00000352270.3:p.Leu76His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.531T>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19563
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu76His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-23847659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847659
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847659
    reference: chr 14
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1404C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-581C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.228C>T
  hgvsp: ENST00000359320.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.228C>T
  hgvsp: ENST00000382809.2:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-13C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.228C>T
  hgvsp: ENST00000339180.4:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-849C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.532C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19565
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu76Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/14-23847667-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847667
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847667
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.236C>A
  hgvsp: ENSP00000352270.3:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1412C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-841C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.236C>A
  hgvsp: ENSP00000344819.4:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.127-5C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.540C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.236C>A
  hgvsp: ENSP00000372259.2:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-573C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr79Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

14-23847677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847677
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847677
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.246C>T
  hgvsp: ENST00000339180.4:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-563C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-831C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1422C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.132C>T
  hgvsp: ENST00000555731.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.246C>T
  hgvsp: ENST00000359320.3:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.246C>T
  hgvsp: ENST00000382809.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.550C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19565
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr82Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-23847681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847681
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847681
    reference: chr 14
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1426C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-559C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.554C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.250C>T
  hgvsp: ENSP00000372259.2:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.250C>T
  hgvsp: ENSP00000352270.3:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.136C>T
  hgvsp: ENSP00000451514.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-827C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.250C>T
  hgvsp: ENSP00000344819.4:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5296
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg84Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

14-23847682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847682
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847682
    reference: chr 14
allele count: 6
allele frequency: 4.942339373970346e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.555G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.251G>A
  hgvsp: ENSP00000344819.4:p.Arg84His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.251G>A
  hgvsp: ENSP00000352270.3:p.Arg84His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.251G>A
  hgvsp: ENSP00000372259.2:p.Arg84His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-558G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.137G>A
  hgvsp: ENSP00000451514.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-826G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1427G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg84His
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-23847686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847686
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847686
    reference: chr 14
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.255C>T
  hgvsp: ENST00000382809.2:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1431C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.255C>T
  hgvsp: ENST00000359320.3:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-554C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.559C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.255C>T
  hgvsp: ENST00000339180.4:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.141C>T
  hgvsp: ENST00000555731.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-822C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe85Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-23847687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847687
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847687
    reference: chr 14
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.560G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1432G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.256G>A
  hgvsp: ENSP00000344819.4:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-821G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-553G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.256G>A
  hgvsp: ENSP00000352270.3:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.256G>A
  hgvsp: ENSP00000372259.2:p.Asp86Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.142G>A
  hgvsp: ENSP00000451514.1:p.Asp48Asn
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6217
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp86Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

14-23847690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847690
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847690
    reference: chr 14
allele count: 5
allele frequency: 4.11868399808893e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.259C>T
  hgvsp: ENSP00000344819.4:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.145C>T
  hgvsp: ENSP00000451514.1:p.Arg49Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-818C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.259C>T
  hgvsp: ENSP00000372259.2:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.563C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.259C>T
  hgvsp: ENSP00000352270.3:p.Arg87Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1435C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-550C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19575
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg87Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

14-23847691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847691
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847691
    reference: chr 14
allele count: 11
allele frequency: 9.061104795795647e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.564G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.260G>A
  hgvsp: ENSP00000344819.4:p.Arg87Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.146G>A
  hgvsp: ENSP00000451514.1:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.260G>A
  hgvsp: ENSP00000352270.3:p.Arg87Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-549G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1436G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.260G>A
  hgvsp: ENSP00000372259.2:p.Arg87Gln
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-817G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19583
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg87Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-23847697-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847697
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847697
    reference: chr 14
allele count: 7
allele frequency: 5.766157597324503e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-811A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.152A>C
  hgvsp: ENSP00000451514.1:p.Asn51Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.266A>C
  hgvsp: ENSP00000344819.4:p.Asn89Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.570A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1442A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.266A>C
  hgvsp: ENSP00000352270.3:p.Asn89Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.266A>C
  hgvsp: ENSP00000372259.2:p.Asn89Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-543A>C
  variant of: http://identifiers.org/hgnc/19176
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19587
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Asn89Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

14-23847720-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847720
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847720
    reference: chr 14
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+10C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+10C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.593C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-788C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+10C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+10C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+10C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-520C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-23847733-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847733
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847733
    reference: chr 14
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-775C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+23C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+23C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+23C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.606C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+23C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+23C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-507C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5003
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-23847751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847751
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847751
    reference: chr 14
allele count: 4
allele frequency: 3.298914657077821e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+41C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.624C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-757C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+41C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+41C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+41C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+41C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-489C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

14-23847755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847755
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847755
    reference: chr 14
allele count: 68
allele frequency: 5.608709996700759e-4
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.628C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+45C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+45C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+45C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+45C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-485C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-753C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+45C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12950
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 11843
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

14-23847758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847758
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847758
    reference: chr 14
allele count: 7
allele frequency: 5.774624649397789e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+48C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-750C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+48C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-482C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+48C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+48C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.631C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+48C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-23847760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847760
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847760
    reference: chr 14
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.279+50A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-480A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+50A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+50A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+50A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.633A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+50A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-748A>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

14-23847835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847835
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847835
    reference: chr 14
allele count: 26
allele frequency: 2.199996615389823e-4
allele num: 118182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+125C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.708C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-405C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-43C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+125C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+125C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-673C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+125C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9586
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26376
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30955
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-23847840-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847840
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847840
    reference: chr 14
allele count: 1
allele frequency: 8.464820207218798e-6
allele num: 118136
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+130C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+130C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.713C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-400C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+130C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-38C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+130C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-668C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13966
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

14-23847846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847846
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847846
    reference: chr 14
allele count: 10
allele frequency: 8.478456242687331e-5
allele num: 117946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+136A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+136A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+136A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-662A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-32A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+136A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.719A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-394A>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

14-23847849-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847849
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847849
    reference: chr 14
allele count: 2
allele frequency: 1.69848495142333e-5
allele num: 117752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-659G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+139G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.722G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+139G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-29G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+139G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-391G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+139G>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

14-23847858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847858
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847858
    reference: chr 14
allele count: 1
allele frequency: 8.540584859251161e-6
allele num: 117088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-650G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+148G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-382G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+148G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+148G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.731G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-20G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+148G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

14-23847868-GAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847868
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847866
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 116736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.742_743delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+159_165+160delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+159_279+160delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+159_1455+160delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-9_280-8delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+159_279+160delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-639_127-638delAT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-371_127-370delAT
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
hgvs: c.280-9_280-8delAT
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: GAT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

14-23847869-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847869
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847869
    reference: chr 14
allele count: 3
allele frequency: 2.570826263561109e-5
allele num: 116694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.742A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+159A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+159A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-371A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+159A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280-9A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+159A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-639A>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-23847878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847878
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847878
    reference: chr 14
allele count: 2
allele frequency: 1.720518908502804e-5
allele num: 116244
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+168C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+168C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-630C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+168C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-362C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.751C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.280C>T
  hgvsp: ENST00000339180.4:c.280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+168C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
hgvs: c.280C>T
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

14-23847882-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847882
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847882
    reference: chr 14
allele count: 2
allele frequency: 1.72398931126627e-5
allele num: 116010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-626A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+172A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+172A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.284A>G
  hgvsp: ENSP00000344819.4:p.Gln95Arg
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-358A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.755A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+172A>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+172A>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln95Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

14-23847885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847885
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847885
    reference: chr 14
allele count: 1
allele frequency: 8.627829928216456e-6
allele num: 115904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.287G>A
  hgvsp: ENSP00000344819.4:p.Gly96Asp
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+175G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+175G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.758G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+175G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-623G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+175G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-355G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly96Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

14-23847885-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847885
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847885
    reference: chr 14
allele count: 1
allele frequency: 8.627829928216456e-6
allele num: 115904
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+175G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+175G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-355G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+175G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.287G>C
  hgvsp: ENSP00000344819.4:p.Gly96Ala
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-623G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.758G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+175G>C
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8589
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly96Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/14-23847886-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847886
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847886
    reference: chr 14
allele count: 1
allele frequency: 8.627234453723514e-6
allele num: 115912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.759C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+176C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+176C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.288C>A
  hgvsp: ENST00000339180.4:c.288C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+176C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-622C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-354C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+176C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly96Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

14-23847886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847886
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847886
    reference: chr 14
allele count: 1
allele frequency: 8.627234453723514e-6
allele num: 115912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+176C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+176C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.288C>T
  hgvsp: ENST00000339180.4:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.759C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-354C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-622C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+176C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+176C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly96Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

14-23847889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847889
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847889
    reference: chr 14
allele count: 15
allele frequency: 1.296680497925311e-4
allele num: 115680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+179C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.291C>T
  hgvsp: ENST00000339180.4:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+179C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.762C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+179C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-619C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-351C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+179C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25716
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His97His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

14-23847890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847890
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847890
    reference: chr 14
allele count: 6
allele frequency: 5.191568892119199e-5
allele num: 115572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+180G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-618G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.763G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+180G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.292G>A
  hgvsp: ENSP00000344819.4:p.Gly98Arg
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+180G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+180G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-350G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly98Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

14-23847891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847891
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847891
    reference: chr 14
allele count: 3
allele frequency: 2.594302910807866e-5
allele num: 115638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.293G>A
  hgvsp: ENSP00000344819.4:p.Gly98Glu
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-349G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.764G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+181G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-617G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+181G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+181G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+181G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25806
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly98Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

14-23847897-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847897
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847897
    reference: chr 14
allele count: 1
allele frequency: 8.65830851284893e-6
allele num: 115496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-611C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.299C>G
  hgvsp: ENSP00000344819.4:p.Ser100Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-343C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.770C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+187C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+187C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+187C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+187C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser100Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

14-23847905-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847905
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847905
    reference: chr 14
allele count: 3
allele frequency: 2.602720710716269e-5
allele num: 115264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-335C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+195C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-603C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+195C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.778C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.307C>G
  hgvsp: ENSP00000344819.4:p.Pro103Ala
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+195C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+195C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro103Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

14-23847908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847908
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847908
    reference: chr 14
allele count: 3
allele frequency: 2.604890247290914e-5
allele num: 115168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+198C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+198C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-332C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.310C>T
  hgvsp: ENSP00000344819.4:p.His104Tyr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.781C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+198C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+198C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-600C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His104Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

14-23847912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847912
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847912
    reference: chr 14
allele count: 4
allele frequency: 3.477716531325532e-5
allele num: 115018
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+202C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-328C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+202C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.785C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-596C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+202C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.314C>T
  hgvsp: ENSP00000344819.4:p.Pro105Leu
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+202C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro105Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

14-23847913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847913
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847913
    reference: chr 14
allele count: 2
allele frequency: 1.739765827519616e-5
allele num: 114958
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+203G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+203G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.315G>A
  hgvsp: ENST00000339180.4:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-595G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.786G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-327G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+203G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+203G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro105Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

14-23847915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847915
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847915
    reference: chr 14
allele count: 1
allele frequency: 8.698677800974252e-6
allele num: 114960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-325T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.788T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+205T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.317T>C
  hgvsp: ENSP00000344819.4:p.Leu106Pro
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+205T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+205T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-593T>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+205T>C
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36249
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu106Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-23847920-C-CTACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847920
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847924
    reference: chr 14
allele count: 1
allele frequency: 8.705644740049447e-6
allele num: 114868
alternate allele: CTACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+211_165+214dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.794_797dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.323_326dupTACT
  hgvsp: ENSP00000344819.4:p.Ser110ThrfsTer51
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+211_279+214dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-587_127-584dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+211_279+214dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+211_1455+214dupTACT
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-319_127-316dupTACT
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser110ThrfsTer51
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

14-23847927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847927
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847927
    reference: chr 14
allele count: 1
allele frequency: 8.716875871687587e-6
allele num: 114720
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+217C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+217C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+217C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.329C>T
  hgvsp: ENSP00000344819.4:p.Ser110Phe
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.800C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-313C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+217C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-581C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser110Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

14-23847929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847929
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847929
    reference: chr 14
allele count: 6
allele frequency: 5.232497296543063e-5
allele num: 114668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+219C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+219C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.802C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.331C>T
  hgvsp: ENSP00000344819.4:p.His111Tyr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+219C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-579C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+219C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-311C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25653
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His111Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/14-23847939-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847939
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847939
    reference: chr 14
allele count: 456
allele frequency: 3.983854903810872e-3
allele num: 114462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-301A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+229A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+229A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.341A>C
  hgvsp: ENSP00000344819.4:p.Lys114Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.812A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+229A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+229A>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-569A>C
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 25415
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Lys114Thr
num of homozygotes: 9
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

14-23847940-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847940
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847940
    reference: chr 14
allele count: 5
allele frequency: 4.371011452050004e-5
allele num: 114390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.342G>T
  hgvsp: ENSP00000344819.4:p.Lys114Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+230G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+230G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+230G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.813G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-568G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+230G>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-300G>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys114Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

14-23847941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847941
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847941
    reference: chr 14
allele count: 1
allele frequency: 8.743398733955863e-6
allele num: 114372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+231G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.343G>A
  hgvsp: ENSP00000344819.4:p.Val115Ile
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.814G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+231G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+231G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-299G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+231G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-567G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val115Ile
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-23847943-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847943
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847943
    reference: chr 14
allele count: 1
allele frequency: 8.749825003499931e-6
allele num: 114288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+233C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-297C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.816C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.345C>A
  hgvsp: ENST00000339180.4:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+233C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+233C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+233C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-565C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25405
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val115Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-23847947-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847947
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847947
    reference: chr 14
allele count: 4
allele frequency: 3.50109409190372e-5
allele num: 114250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.820C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+237C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-293C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-561C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+237C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.349C>A
  hgvsp: ENSP00000344819.4:p.Pro117Thr
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+237C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+237C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25355
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro117Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

14-23847949-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847949
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847949
    reference: chr 14
allele count: 4
allele frequency: 3.503608716978488e-5
allele num: 114168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.351C>G
  hgvsp: ENST00000339180.4:c.351C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+239C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-291C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+239C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.822C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-559C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+239C>G
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+239C>G
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro117Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

14-23847958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847958
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847958
    reference: chr 14
allele count: 7
allele frequency: 6.142613945488689e-5
allele num: 113958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+248G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+248G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+248G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-282G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+248G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-550G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.360G>A
  hgvsp: ENSP00000344819.4:p.Trp120Ter
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.831G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24797
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Trp120Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

14-23847962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847962
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847962
    reference: chr 14
allele count: 5
allele frequency: 4.390972161236498e-5
allele num: 113870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.835G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+252G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.364G>A
  hgvsp: ENSP00000344819.4:p.Gly122Ser
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-546G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+252G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+252G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+252G>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-278G>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly122Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

14-23847963-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847963
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847963
    reference: chr 14
allele count: 1
allele frequency: 8.791363364630586e-6
allele num: 113748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+253G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.836G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+253G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+253G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.365G>C
  hgvsp: ENSP00000344819.4:p.Gly122Ala
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+253G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-277G>C
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-545G>C
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly122Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-23847968-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847968
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847969
    reference: chr 14
allele count: 15
allele frequency: 1.336255278208349e-4
allele num: 112254
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.377dupC
  hgvsp: ENSP00000344819.4:p.Trp128LeufsTer32
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+265dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-265dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.848dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-533dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+265dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+265dupC
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+265dupC
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15241
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24026
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7147
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp128LeufsTer32
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/14-23847969-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847969
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847969
    reference: chr 14
allele count: 2
allele frequency: 1.774433955568174e-5
allele num: 112712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-271C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+259C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.371C>A
  hgvsp: ENSP00000344819.4:p.Thr124Asn
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+259C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+259C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.842C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-539C>A
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+259C>A
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24311
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr124Asn
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

14-23847969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23847969
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 23847969
    reference: chr 14
allele count: 2
allele frequency: 1.774433955568174e-5
allele num: 112712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000555487
  gene symbol: CMTM5
  hgvsc: ENST00000555487.1:n.842C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000372259
  ensembl transcript: ENST00000382809
  gene symbol: CMTM5
  hgvsc: ENST00000382809.2:c.279+259C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000380404
  ensembl transcript: ENST00000397227
  gene symbol: CMTM5
  hgvsc: ENST00000397227.3:c.127-271C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000451514
  ensembl transcript: ENST00000555731
  gene symbol: CMTM5
  hgvsc: ENST00000555731.1:c.165+259C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344819
  ensembl transcript: ENST00000339180
  gene symbol: CMTM5
  hgvsc: ENST00000339180.4:c.371C>T
  hgvsp: ENSP00000344819.4:p.Thr124Ile
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl transcript: ENST00000553750
  gene symbol: CMTM5
  hgvsc: ENST00000553750.1:n.1455+259C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000352270
  ensembl transcript: ENST00000359320
  gene symbol: CMTM5
  hgvsc: ENST00000359320.3:c.279+259C>T
  variant of: http://identifiers.org/hgnc/19176
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166091
  ensembl protein: ENSP00000344160
  ensembl transcript: ENST00000342473
  gene symbol: CMTM5
  hgvsc: ENST00000342473.4:c.127-539C>T
  variant of: http://identifiers.org/hgnc/19176
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15155
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr124Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.122904e6

VQSLOD
type: SiteQuality
SIO_000300: -3.043e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.116e0

QD
type: SiteQuality
SIO_000300: 1.236e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19538
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 14146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.690755333461465e-3
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.991188635137565e-5
allele num: 66732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 2.125848e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.71e-2

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.01e-1

FS
type: SiteQuality
SIO_000300: 9.298999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

DP
type: SiteQuality
SIO_000300: 2.124862e6

VQSLOD
type: SiteQuality
SIO_000300: -1.805e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14150
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19538
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.125429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.471e1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.267441860465116e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 1.203e0

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 2.125555e6

GenotypeQuality
all individuals: 4011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.203e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 2.125555e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.126519e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14152
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.386642015253062e-3
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.421e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 2.126519e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19555
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.126536e6

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.222e0

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 2.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 2.1268e6

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2856
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.544e0

DP
type: SiteQuality
SIO_000300: 2.127556e6

VQSLOD
type: SiteQuality
SIO_000300: -2.851e-1

FS
type: SiteQuality
SIO_000300: 4.015e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

QD
type: SiteQuality
SIO_000300: 1.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.372e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 2.127715e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.926e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 4007
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5293
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 2.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

DP
type: SiteQuality
SIO_000300: 2.128027e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.708e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.383e0

QD
type: SiteQuality
SIO_000300: 1.789e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.177e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-3

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

FS
type: SiteQuality
SIO_000300: 3.621e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.477e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.129e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.948e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.022e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 652

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 3.28208671618587e-3
allele num: 11578
num of homozygotes: 0

African
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allele count: 627
allele frequency: 6.025369978858351e-2
allele num: 10406
num of homozygotes: 20

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.209e0

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

FS
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 2.127445e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.119e0

FS
type: SiteQuality
SIO_000300: 1.537e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 2.127562e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.49e0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.319e0

DP
type: SiteQuality
SIO_000300: 2.127518e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.127375e6

FS
type: SiteQuality
SIO_000300: 6.604e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.616e0

QD
type: SiteQuality
SIO_000300: 1.347e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.127438e6

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994485073732166e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 2.127913e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.127565e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

East Asian
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allele num: 8654
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VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.446e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.127892e6

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.12816e6

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348799568384138e-4
allele num: 66726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

DP
type: SiteQuality
SIO_000300: 2.128708e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049066330965441e-4
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.527e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 2.128175e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6192
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GenotypeQuality
all individuals: 5275
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.764e0

DP
type: SiteQuality
SIO_000300: 2.126085e6

QD
type: SiteQuality
SIO_000300: 1.537e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 13434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 2.123411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 1.4523e1

QD
type: SiteQuality
SIO_000300: 1.351e1

VQSLOD
type: SiteQuality
SIO_000300: -9.798e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

GenotypeQuality
all individuals: 19585
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12455
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 5006
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variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.402e1

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 4.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 2.118744e6

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12163
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3999
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 19640
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variant carriers: 67

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.051974552874805e-4
allele num: 66648
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.034314918471648e-3
allele num: 16436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 2.121236e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.088745088976196e-4
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.354e1

FS
type: SiteQuality
SIO_000300: 9.71e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.120764e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.838e0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19633
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variant carriers: 1

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 5272
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.121061e6

FS
type: SiteQuality
SIO_000300: 5.21e0

GenotypeQuality
all individuals: 8883
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 329
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GenotypeQuality
all individuals: 835
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GenotypeQuality
all individuals: 2371
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GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 599
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GenotypeQuality
all individuals: 1227
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GenotypeQuality
all individuals: 2983
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GenotypeQuality
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GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 3050
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.697655070409515e-4
allele num: 64906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.125398512221041e-4
allele num: 9410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.5877e6

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 2.518e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8823
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 653
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GenotypeQuality
all individuals: 398
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GenotypeQuality
all individuals: 2505
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GenotypeQuality
all individuals: 3008
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variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
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GenotypeQuality
all individuals: 1064
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GenotypeQuality
all individuals: 602
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GenotypeQuality
all individuals: 1711
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541544627716972e-5
allele num: 64870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

FS
type: SiteQuality
SIO_000300: 1.748e0

DP
type: SiteQuality
SIO_000300: 1.58393e6

QD
type: SiteQuality
SIO_000300: 1.948e1

MQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.651e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.738203425375742e-4
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

FS
type: SiteQuality
SIO_000300: 8.159999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 1.619e1

DP
type: SiteQuality
SIO_000300: 1.581689e6

GenotypeQuality
all individuals: 2626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.095304423190021e-5
allele num: 64614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.205e0

FS
type: SiteQuality
SIO_000300: 2.203e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 1.579028e6

GenotypeQuality
all individuals: 1707
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557535356052582e-5
allele num: 64204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

QD
type: SiteQuality
SIO_000300: 1.436e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 9.244999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

DP
type: SiteQuality
SIO_000300: 1.572626e6

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8598
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variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.419e1

QD
type: SiteQuality
SIO_000300: 1.731e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.571846e6

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 8618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
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variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.491620111731844e-4
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.571029e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.357e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 309
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2901
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8603
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.141098127905516e-5
allele num: 63672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 2.158e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.943e0

QD
type: SiteQuality
SIO_000300: 1.084e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.339e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 1.569826e6

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1092
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.147920798312714e-5
allele num: 63534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.484e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: -5.769e-1

DP
type: SiteQuality
SIO_000300: 1.568586e6

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 8.997e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

DP
type: SiteQuality
SIO_000300: 1.567845e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.904e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 2880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 2733
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variant carriers: 0

GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 1435
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variant carriers: 0

GenotypeQuality
all individuals: 588
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variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575448215017173e-5
allele num: 63474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.904e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

DP
type: SiteQuality
SIO_000300: 1.567845e6

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575348939790164e-5
allele num: 63478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.567724e6

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 4.299e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.299e0

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.567724e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2729
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variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.479471120389701e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.753155680224404e-4
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.578930748097388e-4
allele num: 63334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.082e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.566839e6

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2858
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variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.674669279764821e-4
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 3.009e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.566825e6

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
all individuals: 2125
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variant carriers: 0

GenotypeQuality
all individuals: 8516
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variant carriers: 0

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 1267
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GenotypeQuality
all individuals: 1696
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2882
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variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.159957024584466e-5
allele num: 63292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 1.172e1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 1.565935e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 2.156e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 588
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GenotypeQuality
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GenotypeQuality
all individuals: 2015
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variant carriers: 0

GenotypeQuality
all individuals: 8469
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variant carriers: 0

GenotypeQuality
all individuals: 35790
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variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.564481e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.021e0

VQSLOD
type: SiteQuality
SIO_000300: -5.905e-1

QD
type: SiteQuality
SIO_000300: 1.715e1

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 636
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GenotypeQuality
all individuals: 1412
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.758581308292621e-5
allele num: 63044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.208e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

DP
type: SiteQuality
SIO_000300: 1.561463e6

FS
type: SiteQuality
SIO_000300: 9.734e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -4.088e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 8433
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1691
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.175611305176246e-5
allele num: 62980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 1.077e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.560179e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.488e0

FS
type: SiteQuality
SIO_000300: 5.599e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 35969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1520
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GenotypeQuality
all individuals: 1691
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variant carriers: 4

GenotypeQuality
all individuals: 1400
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GenotypeQuality
all individuals: 2826
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GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62882
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.352941176470588e-4
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225940909648155e-4
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.559188e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 2.641e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591495050450393e-5
allele num: 62834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.559251e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

FS
type: SiteQuality
SIO_000300: 2.3929e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441125e-5
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.09e-2

MQ
type: SiteQuality
SIO_000300: 5.909e1

DP
type: SiteQuality
SIO_000300: 1.557756e6

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

FS
type: SiteQuality
SIO_000300: 1.158e0

QD
type: SiteQuality
SIO_000300: 9.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

GenotypeQuality
all individuals: 1498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.378e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

DP
type: SiteQuality
SIO_000300: 1.556188e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQ
type: SiteQuality
SIO_000300: 5.59e1

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.185114956150747e-4
allele num: 8438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: -1.771e0

QD
type: SiteQuality
SIO_000300: 5.29e0

DP
type: SiteQuality
SIO_000300: 1.551617e6

FS
type: SiteQuality
SIO_000300: 1.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

GenotypeQuality
all individuals: 8306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35929
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595048968003318e-5
allele num: 62694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.87406015037594e-4
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

DP
type: SiteQuality
SIO_000300: 1.550478e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

VQSLOD
type: SiteQuality
SIO_000300: -3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

GenotypeQuality
all individuals: 2684
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2524
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 586
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2031
bin: 9.75e1
variant carriers: 438

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 35555
bin: 6.25e1
variant carriers: 4

Latino
type: Population
allele count: 42
allele frequency: 3.703050608358314e-3
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147037128104254e-5
allele num: 16268
num of homozygotes: 0

African
type: Population
allele count: 398
allele frequency: 4.741482010960209e-2
allele num: 8394
num of homozygotes: 9

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.396855325812534e-4
allele num: 62582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.546257e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
SIO_000300: 1.106e0

QD
type: SiteQuality
SIO_000300: 1.183e1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

GenotypeQuality
all individuals: 462
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.395497569710924e-5
allele num: 62544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.413e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.539143e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 632
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59877214299418e-5
allele num: 62548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.098e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 7.633e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.669e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.578e1

DP
type: SiteQuality
SIO_000300: 1.538022e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34431
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.084e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

DP
type: SiteQuality
SIO_000300: 1.533843e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.600576092174748e-4
allele num: 8332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.616e0

FS
type: SiteQuality
SIO_000300: 9.401e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.046e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.532379e6

VQSLOD
type: SiteQuality
SIO_000300: -8.668e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeQuality
all individuals: 1237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34570
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.407381303261357e-5
allele num: 62428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.37e0

FS
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.274e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.52857e6

GenotypeQuality
all individuals: 1166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.354603249352484e-4
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.848201084277969e-4
allele num: 16232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 1.108e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

DP
type: SiteQuality
SIO_000300: 1.519196e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.029032983267496e-5
allele num: 62274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 2.424e0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

DP
type: SiteQuality
SIO_000300: 1.514842e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.647e0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17813383600377e-4
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.228e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.576000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

FS
type: SiteQuality
SIO_000300: 1.348e0

DP
type: SiteQuality
SIO_000300: 1.513946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 910
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 389
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.278026905829596e-4
allele num: 11150
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187648456057007e-4
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.248439450686642e-4
allele num: 8010
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.192717364379489e-5
allele num: 16148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.143057229406209e-5
allele num: 61402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 6.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.504984e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 4.05e0

GenotypeQuality
all individuals: 866
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.243909559801473e-5
allele num: 61654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

FS
type: SiteQuality
SIO_000300: 3.491e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.504835e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2