15-49090192-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090192
    reference: chr 15
allele count: 1
allele frequency: 8.34432002136146e-6
allele num: 119842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.144T>C
  hgvsp: ENST00000558591.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.144T>C
  hgvsp: ENST00000325747.5:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.270T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.144T>C
  hgvsp: ENST00000380950.2:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.144T>C
  hgvsp: ENST00000399334.3:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.144T>C
  hgvsp: ENST00000560322.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser48Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

15-49090198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090198
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090198
    reference: chr 15
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.138C>T
  hgvsp: ENST00000558591.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.138C>T
  hgvsp: ENST00000560322.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.264C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.138C>T
  hgvsp: ENST00000399334.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.138C>T
  hgvsp: ENST00000325747.5:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.138C>T
  hgvsp: ENST00000380950.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu46Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

15-49090198-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090198
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090198
    reference: chr 15
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.264C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.138C>G
  hgvsp: ENST00000560322.1:c.138C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.138C>G
  hgvsp: ENST00000325747.5:c.138C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.138C>G
  hgvsp: ENST00000380950.2:c.138C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.138C>G
  hgvsp: ENST00000399334.3:c.138C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.138C>G
  hgvsp: ENST00000558591.1:c.138C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu46Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-49090200-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090200
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090200
    reference: chr 15
allele count: 2
allele frequency: 1.668891855807744e-5
allele num: 119840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.136C>A
  hgvsp: ENSP00000321000.5:p.Leu46Ile
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.262C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.136C>A
  hgvsp: ENSP00000382271.3:p.Leu46Ile
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.136C>A
  hgvsp: ENSP00000453914.1:p.Leu46Ile
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.136C>A
  hgvsp: ENSP00000453440.1:p.Leu46Ile
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.136C>A
  hgvsp: ENSP00000370337.2:p.Leu46Ile
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu46Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

15-49090203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090203
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090203
    reference: chr 15
allele count: 43
allele frequency: 3.589255605081718e-4
allele num: 119802
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.133G>A
  hgvsp: ENSP00000453440.1:p.Asp45Asn
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.133G>A
  hgvsp: ENSP00000382271.3:p.Asp45Asn
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.133G>A
  hgvsp: ENSP00000453914.1:p.Asp45Asn
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.133G>A
  hgvsp: ENSP00000370337.2:p.Asp45Asn
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.133G>A
  hgvsp: ENSP00000321000.5:p.Asp45Asn
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.259G>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp45Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-49090204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090204
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090204
    reference: chr 15
allele count: 3
allele frequency: 2.504048211274894e-5
allele num: 119806
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.132C>T
  hgvsp: ENST00000380950.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.132C>T
  hgvsp: ENST00000560322.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.132C>T
  hgvsp: ENST00000558591.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.258C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.132C>T
  hgvsp: ENST00000325747.5:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.132C>T
  hgvsp: ENST00000399334.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp44Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

15-49090215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090215
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090215
    reference: chr 15
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.247A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.121A>G
  hgvsp: ENSP00000321000.5:p.Met41Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.121A>G
  hgvsp: ENSP00000382271.3:p.Met41Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.121A>G
  hgvsp: ENSP00000453914.1:p.Met41Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.121A>G
  hgvsp: ENSP00000370337.2:p.Met41Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.121A>G
  hgvsp: ENSP00000453440.1:p.Met41Val
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met41Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

15-49090228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090228
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090228
    reference: chr 15
allele count: 1
allele frequency: 8.396164631996104e-6
allele num: 119102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.108C>T
  hgvsp: ENST00000325747.5:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.108C>T
  hgvsp: ENST00000558591.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.108C>T
  hgvsp: ENST00000560322.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.108C>T
  hgvsp: ENST00000399334.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.108C>T
  hgvsp: ENST00000380950.2:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.234C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp36Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

15-49090240-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090240
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090240
    reference: chr 15
allele count: 4
allele frequency: 3.394778830159215e-5
allele num: 117828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.96G>C
  hgvsp: ENSP00000321000.5:p.Gln32His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.96G>C
  hgvsp: ENSP00000453440.1:p.Gln32His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.222G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.96G>C
  hgvsp: ENSP00000370337.2:p.Gln32His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.96G>C
  hgvsp: ENSP00000382271.3:p.Gln32His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.96G>C
  hgvsp: ENSP00000453914.1:p.Gln32His
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8064
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln32His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

15-49090242-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090242
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090242
    reference: chr 15
allele count: 1
allele frequency: 8.489685032685287e-6
allele num: 117790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.94C>A
  hgvsp: ENSP00000382271.3:p.Gln32Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.94C>A
  hgvsp: ENSP00000453914.1:p.Gln32Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.94C>A
  hgvsp: ENSP00000453440.1:p.Gln32Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.94C>A
  hgvsp: ENSP00000370337.2:p.Gln32Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.220C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.94C>A
  hgvsp: ENSP00000321000.5:p.Gln32Lys
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31483
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln32Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-49090250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090250
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090250
    reference: chr 15
allele count: 3
allele frequency: 2.568229291511146e-5
allele num: 116812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-2A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-2A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-2A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-2A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-2A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-2A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
hgvs: c.88-2A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-49090251-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090251
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090251
    reference: chr 15
allele count: 6
allele frequency: 5.152779924769413e-5
allele num: 116442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-3C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-3C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-3C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-3C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-3C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-3C>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29310
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8063
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
hgvs: c.88-3C>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

15-49090261-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090261
    reference: chr 15
allele count: 1
allele frequency: 8.718243796969539e-6
allele num: 114702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-13C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-13C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-13C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-13C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-13C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-13C>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-49090272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090272
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090272
    reference: chr 15
allele count: 2
allele frequency: 1.767346505955958e-5
allele num: 113164
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-24A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13264
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9020
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-49090273-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090273
    reference: chr 15
allele count: 1
allele frequency: 8.850027435085049e-6
allele num: 112994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-25T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-25T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-25T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-25T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-25T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-25T>C
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9151
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

15-49090281-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090281
    reference: chr 15
allele count: 1
allele frequency: 8.943423900406031e-6
allele num: 111814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-33T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-33T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-33T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-33T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-33T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-33T>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-49090292-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090292
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090292
    reference: chr 15
allele count: 11
allele frequency: 1.009155795306508e-4
allele num: 109002
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-44T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-44T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-44T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-44T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-44T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-44T>C
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14873
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

15-49090298-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49090298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49090298
    reference: chr 15
allele count: 1
allele frequency: 9.283154787322924e-6
allele num: 107722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.88-50G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.88-50G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.88-50G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.88-50G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.214-50G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.88-50G>C
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

15-49097717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097717
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097717
    reference: chr 15
allele count: 1
allele frequency: 9.328706295011009e-6
allele num: 107196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+43A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+43A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.253A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+43A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+43A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+43A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+43A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-49097719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097719
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097719
    reference: chr 15
allele count: 2
allele frequency: 1.871397559697582e-5
allele num: 106872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+41C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+41C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+41C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.251C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+41C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+41C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+41C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-49097720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097720
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097720
    reference: chr 15
allele count: 1
allele frequency: 9.347192103492111e-6
allele num: 106984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.250C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+40C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+40C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+40C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+40C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+40C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+40C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

15-49097726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097726
    reference: chr 15
allele count: 1
allele frequency: 1.020241593209272e-5
allele num: 98016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+34C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+34C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+34C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.244C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+34C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+34C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+34C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10201
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6046
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-49097727-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097727
    reference: chr 15
allele count: 14
allele frequency: 1.417635384179189e-4
allele num: 98756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.243A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+33A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+33A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+33A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+33A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+33A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+33A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-49097728-G-GTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097730
    reference: chr 15
allele count: 2329
allele frequency: 2.943704340352385e-2
allele num: 79118
alternate allele: GTC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+30_87+31dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+30_213+31dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.240_241dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+30_87+31dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+30_87+31dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+30_87+31dupGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+30_87+31dupGA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 7.5e0
  variant carriers: 1039
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 4.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 9630
  bin: 2.25e1
  variant carriers: 531
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 1.25e1
  variant carriers: 1429
genotype depth: GenotypeDepth
  all individuals: 8821
  bin: 1.75e1
  variant carriers: 969
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.5e0
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 2.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 4.75e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 3.25e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 5148
  bin: 2.25e1
  variant carriers: 457
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 1.25e1
  variant carriers: 588
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 9325
  bin: 2.5e0
  variant carriers: 647
genotype quality: GenotypeQuality
  all individuals: 5632
  bin: 9.75e1
  variant carriers: 431
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 4.25e1
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 92
num of homozygotes: 19
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

15-49097730-CTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097730
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097727
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 98814
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+27_87+29delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+27_87+29delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+27_87+29delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+27_87+29delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+27_213+29delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.237_239delAGA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+27_87+29delAGA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6040
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: CTCT
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-49097731-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097731
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097731
    reference: chr 15
allele count: 1
allele frequency: 1.023227258774174e-5
allele num: 97730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+29A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.239A>T
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

15-49097731-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097731
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097731
    reference: chr 15
allele count: 2
allele frequency: 2.046454517548347e-5
allele num: 97730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+29A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+29A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+29A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.239A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+29A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+29A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+29A>C
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5590
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

15-49097732-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097733
    reference: chr 15
allele count: 5191
allele frequency: 8.910976070312768e-2
allele num: 58254
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+27dupA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.237dupA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 2272
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 1100
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 1429
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 251
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.25e1
  variant carriers: 418
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 5.75e1
  variant carriers: 294
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 9.75e1
  variant carriers: 1338
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 406
genotype quality: GenotypeQuality
  all individuals: 19702
  bin: 2.5e0
  variant carriers: 408
num of homozygotes: 50
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-49097732-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097734
    reference: chr 15
allele count: 661
allele frequency: 1.134686030143853e-2
allele num: 58254
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+26_87+27dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+26_213+27dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+26_87+27dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+26_87+27dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+26_87+27dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.236_237dupAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+26_87+27dupAA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 19702
  bin: 2.5e0
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 5.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 49
num of homozygotes: 3
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-49097732-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097731
    reference: chr 15
allele count: 8268
allele frequency: 1.419301678854671e-1
allele num: 58254
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+27delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+27delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+27delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+27delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.237delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+27delA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+27delA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 520
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 2492
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 2854
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 1800
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 911
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.25e1
  variant carriers: 664
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 5.25e1
  variant carriers: 569
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 1.75e1
  variant carriers: 625
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 579
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 9.75e1
  variant carriers: 1923
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 255
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 580
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 5.75e1
  variant carriers: 507
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CT
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

15-49097732-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097730
    reference: chr 15
allele count: 495
allele frequency: 8.49727057369451e-3
allele num: 58254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+26_87+27delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+26_87+27delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+26_87+27delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+26_87+27delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+26_213+27delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.236_237delAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+26_87+27delAA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 5.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 19702
  bin: 2.5e0
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 4.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 49
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: CTT
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

15-49097732-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097735
    reference: chr 15
allele count: 75
allele frequency: 1.287465238438562e-3
allele num: 58254
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.235_237dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+25_87+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+25_213+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+25_87+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+25_87+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+25_87+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+25_87+27dupAAA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

15-49097732-CTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097732
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097727
    reference: chr 15
allele count: 19
allele frequency: 3.261578604044357e-4
allele num: 58254
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19702
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3086
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 4
  allele frequency: 8.166598611678236e-4
  allele num: 4898
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 13
  allele frequency: 4.037517858252065e-4
  allele num: 32198
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.091226538629419e-4
  allele num: 9164
  num of homozygotes: 0
population: African
population: Other
population: East Asian
reference allele: CTTTTT
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

15-49097733-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097733
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097734
    reference: chr 15
allele count: 28591
allele frequency: 4.881009287080033e-1
allele num: 58576
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+26_213+27insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+26_87+27insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+26_87+27insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+26_87+27insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.236_237insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+26_87+27insG
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+26_87+27insG
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 7.5e0
  variant carriers: 1973
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 698
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 973
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.25e1
  variant carriers: 2207
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.75e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.25e1
  variant carriers: 5561
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.75e1
  variant carriers: 3618
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 749
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 6.25e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 1.25e1
  variant carriers: 5044
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 1.75e1
  variant carriers: 6584
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 819
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 466
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 505
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 1001
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 967
genotype quality: GenotypeQuality
  all individuals: 12995
  bin: 2.5e0
  variant carriers: 641
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 5.75e1
  variant carriers: 1016
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 6.25e1
  variant carriers: 915
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 993
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 994
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 920
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 772
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.5e0
  variant carriers: 908
num of homozygotes: 989
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

15-49097734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097734
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097734
    reference: chr 15
allele count: 11374
allele frequency: 2.971419614399917e-1
allele num: 38278
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+26A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+26A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.236A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+26A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+26A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+26A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+26A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 4.25e1
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 2.75e1
  variant carriers: 1721
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.25e1
  variant carriers: 922
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 1.25e1
  variant carriers: 1966
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 9.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 3.75e1
  variant carriers: 518
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.25e1
  variant carriers: 3005
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 1.75e1
  variant carriers: 3314
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 6.25e1
  variant carriers: 513
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 6.75e1
  variant carriers: 441
genotype quality: GenotypeQuality
  all individuals: 20973
  bin: 2.5e0
  variant carriers: 587
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 807
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 358
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 4.25e1
  variant carriers: 679
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 1.25e1
  variant carriers: 744
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 598
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 634
num of homozygotes: 33
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS

15-49097735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097735
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097735
    reference: chr 15
allele count: 437
allele frequency: 5.550898051469654e-3
allele num: 78726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+25A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+25A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+25A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+25A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+25A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.235A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+25A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 2.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 2.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 1.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 1.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 8906
  bin: 2.5e0
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 15
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

15-49097736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097736
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097736
    reference: chr 15
allele count: 16
allele frequency: 1.518660541402483e-4
allele num: 105356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.234A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+24A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+24A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7127
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12089
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

15-49097738-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097738
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097738
    reference: chr 15
allele count: 5
allele frequency: 4.575737608902555e-5
allele num: 109272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+22A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.232A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+22A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+22A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+22A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+22A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+22A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

15-49097739-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097739
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097739
    reference: chr 15
allele count: 21
allele frequency: 1.905695306544702e-4
allele num: 110196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+21A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+21A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+21A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+21A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.231A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+21A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+21A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

15-49097740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097740
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097740
    reference: chr 15
allele count: 1
allele frequency: 9.019735180575098e-6
allele num: 110868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.230A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+20A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+20A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+20A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+20A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+20A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+20A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5499
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

15-49097749-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097749
    reference: chr 15
allele count: 2
allele frequency: 1.797300454717015e-5
allele num: 111278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+11A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+11A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.221A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+11A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+11A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+11A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+11A>T
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5817
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

15-49097749-T-TTTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097753
    reference: chr 15
allele count: 1
allele frequency: 8.986502273585076e-6
allele num: 111278
alternate allele: TTTAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+10_87+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+10_213+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+10_87+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.220_221insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+10_87+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+10_87+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+10_87+11insTTAA
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

15-49097750-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097750
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097750
    reference: chr 15
allele count: 11
allele frequency: 1.163282571912013e-4
allele num: 94560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+10T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+10T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+10T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+10T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+10T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.220T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+10T>A
  variant of: http://identifiers.org/hgnc/29298
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8612
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/15-49097752-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097752
    reference: chr 15
allele count: 54
allele frequency: 5.331437711036076e-4
allele num: 101286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+8G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.218G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+8G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+8G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+8G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+8G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+8G>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5408
  bin: 9.75e1
  variant carriers: 38
hgvs: c.87+8G>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

15-49097755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097755
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097755
    reference: chr 15
allele count: 1
allele frequency: 8.543065593657628e-6
allele num: 117054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.215G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+5G>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4061
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
hgvs: c.87+5G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-49097758-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097758
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097758
    reference: chr 15
allele count: 2
allele frequency: 1.704797299601078e-5
allele num: 117316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+2T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+2T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+2T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.212T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+2T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+2T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+2T>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9464
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 8.25e1
  variant carriers: 0
hgvs: c.87+2T>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-49097759-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097759
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097759
    reference: chr 15
allele count: 1
allele frequency: 8.467974121871083e-6
allele num: 118092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.87+1G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.211G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.87+1G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.87+1G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.87+1G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.87+1G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.213+1G>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 2.25e1
  variant carriers: 0
hgvs: c.87+1G>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-49097762-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097762
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097762
    reference: chr 15
allele count: 1
allele frequency: 8.522533578782301e-6
allele num: 117336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.85G>T
  hgvsp: ENSP00000382271.3:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.85G>T
  hgvsp: ENSP00000453440.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.85G>T
  hgvsp: ENSP00000453914.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.85G>T
  hgvsp: ENSP00000370337.2:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.211G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.85G>T
  hgvsp: ENSP00000321000.5:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.208G>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu29Ter
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-49097765-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097765
    reference: chr 15
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.208A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.82A>T
  hgvsp: ENSP00000453914.1:p.Lys28Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.82A>T
  hgvsp: ENSP00000382271.3:p.Lys28Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.82A>T
  hgvsp: ENSP00000321000.5:p.Lys28Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.205A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.82A>T
  hgvsp: ENSP00000453440.1:p.Lys28Ter
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.82A>T
  hgvsp: ENSP00000370337.2:p.Lys28Ter
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys28Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-49097776-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097776
    reference: chr 15
allele count: 1
allele frequency: 8.383775717232013e-6
allele num: 119278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.71A>G
  hgvsp: ENSP00000453440.1:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.71A>G
  hgvsp: ENSP00000382271.3:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.71A>G
  hgvsp: ENSP00000321000.5:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.197A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.71A>G
  hgvsp: ENSP00000453914.1:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.71A>G
  hgvsp: ENSP00000370337.2:p.Tyr24Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.194A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr24Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

15-49097777-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097777
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097777
    reference: chr 15
allele count: 1
allele frequency: 8.382370198997468e-6
allele num: 119298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.70T>C
  hgvsp: ENSP00000382271.3:p.Tyr24His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.193T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.70T>C
  hgvsp: ENSP00000370337.2:p.Tyr24His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.70T>C
  hgvsp: ENSP00000453440.1:p.Tyr24His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.70T>C
  hgvsp: ENSP00000453914.1:p.Tyr24His
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.196T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.70T>C
  hgvsp: ENSP00000321000.5:p.Tyr24His
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr24His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

15-49097786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097786
    reference: chr 15
allele count: 44
allele frequency: 3.682932953879635e-4
allele num: 119470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.61G>A
  hgvsp: ENSP00000382271.3:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.184G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.61G>A
  hgvsp: ENSP00000453440.1:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.61G>A
  hgvsp: ENSP00000453914.1:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.61G>A
  hgvsp: ENSP00000321000.5:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.61G>A
  hgvsp: ENSP00000370337.2:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.187G>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13848
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23078
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu21Lys
num of homozygotes: 3
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

15-49097787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097787
    reference: chr 15
allele count: 6
allele frequency: 5.021676905307912e-5
allele num: 119482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.60C>T
  hgvsp: ENST00000558591.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.60C>T
  hgvsp: ENST00000380950.2:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.60C>T
  hgvsp: ENST00000325747.5:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.183C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.60C>T
  hgvsp: ENST00000399334.3:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.60C>T
  hgvsp: ENST00000560322.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.186C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp20Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-49097791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097791
    reference: chr 15
allele count: 1
allele frequency: 8.364001338240215e-6
allele num: 119560
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.56A>G
  hgvsp: ENSP00000370337.2:p.Tyr19Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.56A>G
  hgvsp: ENSP00000321000.5:p.Tyr19Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.56A>G
  hgvsp: ENSP00000453440.1:p.Tyr19Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.56A>G
  hgvsp: ENSP00000382271.3:p.Tyr19Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.179A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.56A>G
  hgvsp: ENSP00000453914.1:p.Tyr19Cys
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.182A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr19Cys
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-49097806-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097806
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097806
    reference: chr 15
allele count: 1
allele frequency: 8.349615082744685e-6
allele num: 119766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.41A>C
  hgvsp: ENSP00000382271.3:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.41A>C
  hgvsp: ENSP00000321000.5:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.41A>C
  hgvsp: ENSP00000370337.2:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.41A>C
  hgvsp: ENSP00000453914.1:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.167A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.164A>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.41A>C
  hgvsp: ENSP00000453440.1:p.Asn14Thr
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn14Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

15-49097812-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097812
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097812
    reference: chr 15
allele count: 39
allele frequency: 3.254610698489527e-4
allele num: 119830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.35T>C
  hgvsp: ENSP00000453914.1:p.Val12Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.35T>C
  hgvsp: ENSP00000370337.2:p.Val12Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.35T>C
  hgvsp: ENSP00000321000.5:p.Val12Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.161T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.35T>C
  hgvsp: ENSP00000453440.1:p.Val12Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.35T>C
  hgvsp: ENSP00000382271.3:p.Val12Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.158T>C
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val12Ala
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-49097813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097813
    reference: chr 15
allele count: 1
allele frequency: 8.344598541364175e-6
allele num: 119838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.34G>T
  hgvsp: ENSP00000321000.5:p.Val12Leu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.34G>T
  hgvsp: ENSP00000382271.3:p.Val12Leu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.157G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.34G>T
  hgvsp: ENSP00000453440.1:p.Val12Leu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.34G>T
  hgvsp: ENSP00000453914.1:p.Val12Leu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.160G>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.34G>T
  hgvsp: ENSP00000370337.2:p.Val12Leu
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10006
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val12Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

15-49097814-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097814
    reference: chr 15
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.159A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.33A>G
  hgvsp: ENST00000560322.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.33A>G
  hgvsp: ENST00000380950.2:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.33A>G
  hgvsp: ENST00000325747.5:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.33A>G
  hgvsp: ENST00000558591.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.33A>G
  hgvsp: ENST00000399334.3:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.156A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23277
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro11Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

15-49097830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097830
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097830
    reference: chr 15
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.17G>C
  hgvsp: ENSP00000453440.1:p.Gly6Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.143G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.17G>C
  hgvsp: ENSP00000321000.5:p.Gly6Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.17G>C
  hgvsp: ENSP00000382271.3:p.Gly6Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.17G>C
  hgvsp: ENSP00000370337.2:p.Gly6Ala
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.140G>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.17G>C
  hgvsp: ENSP00000453914.1:p.Gly6Ala
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10007
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly6Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-49097834-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097834
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097834
    reference: chr 15
allele count: 1
allele frequency: 8.327226700419692e-6
allele num: 120088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.13T>G
  hgvsp: ENSP00000453914.1:p.Phe5Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.136T>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.13T>G
  hgvsp: ENSP00000321000.5:p.Phe5Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.13T>G
  hgvsp: ENSP00000370337.2:p.Phe5Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.13T>G
  hgvsp: ENSP00000453440.1:p.Phe5Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.13T>G
  hgvsp: ENSP00000382271.3:p.Phe5Val
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.139T>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe5Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

15-49097835-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097835
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097835
    reference: chr 15
allele count: 1
allele frequency: 8.326949338840222e-6
allele num: 120092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.138C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.12C>G
  hgvsp: ENSP00000370337.2:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.12C>G
  hgvsp: ENSP00000321000.5:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.12C>G
  hgvsp: ENSP00000453440.1:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.12C>G
  hgvsp: ENSP00000382271.3:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.135C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.12C>G
  hgvsp: ENSP00000453914.1:p.Asp4Glu
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10009
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp4Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

15-49097843-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097843
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097843
    reference: chr 15
allele count: 32
allele frequency: 2.66435755678412e-4
allele num: 120104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.4T>A
  hgvsp: ENSP00000382271.3:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.4T>A
  hgvsp: ENSP00000370337.2:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.4T>A
  hgvsp: ENSP00000453914.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.130T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.4T>A
  hgvsp: ENSP00000321000.5:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.127T>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.4T>A
  hgvsp: ENSP00000453440.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser2Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-49097846-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097846
    reference: chr 15
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.124A>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.1A>T
  hgvsp: ENSP00000382271.3:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.1A>T
  hgvsp: ENSP00000321000.5:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.1A>T
  hgvsp: ENSP00000453440.1:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.1A>T
  hgvsp: ENSP00000453914.1:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.1A>T
  hgvsp: ENSP00000370337.2:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.127A>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10020
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-49097846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097846
    reference: chr 15
allele count: 2
allele frequency: 1.665168015452759e-5
allele num: 120108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.1A>G
  hgvsp: ENSP00000382271.3:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.1A>G
  hgvsp: ENSP00000453914.1:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.1A>G
  hgvsp: ENSP00000453440.1:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.1A>G
  hgvsp: ENSP00000321000.5:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.124A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.1A>G
  hgvsp: ENSP00000370337.2:p.Met1?
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.127A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-49097851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097851
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097851
    reference: chr 15
allele count: 7
allele frequency: 5.82769989010623e-5
allele num: 120116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.122G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.119G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-5G>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10026
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
hgvs: c.-5G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-49097858-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097858
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097858
    reference: chr 15
allele count: 1
allele frequency: 8.324731111185109e-6
allele num: 120124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-5C>A
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-5C>A
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
hgvs: c.-7-5C>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

15-49097863-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097863
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097863
    reference: chr 15
allele count: 3
allele frequency: 2.497211447217274e-5
allele num: 120134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-10C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-10C>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

15-49097868-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097868
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097868
    reference: chr 15
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-15T>C
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-15T>C
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10026
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-49097872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097872
    reference: chr 15
allele count: 3
allele frequency: 2.497045163223519e-5
allele num: 120142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-19C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-19C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

15-49097883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097883
    reference: chr 15
allele count: 7
allele frequency: 5.827117741076185e-5
allele num: 120128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-30C>T
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-30C>T
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

15-49097884-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097884
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097884
    reference: chr 15
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-31C>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-31C>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4706
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

15-49097893-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49097893
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 49097893
    reference: chr 15
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559444
  gene symbol: CEP152
  hgvsc: ENST00000559444.1:n.120-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000370337
  ensembl transcript: ENST00000380950
  gene symbol: CEP152
  hgvsc: ENST00000380950.2:c.-7-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl transcript: ENST00000559630
  gene symbol: CEP152
  hgvsc: ENST00000559630.1:n.117-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000382271
  ensembl transcript: ENST00000399334
  gene symbol: CEP152
  hgvsc: ENST00000399334.3:c.-7-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000321000
  ensembl transcript: ENST00000325747
  gene symbol: CEP152
  hgvsc: ENST00000325747.5:c.-7-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453914
  ensembl transcript: ENST00000558591
  gene symbol: CEP152
  hgvsc: ENST00000558591.1:c.-7-40A>G
  variant of: http://identifiers.org/hgnc/29298
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103995
  ensembl protein: ENSP00000453440
  ensembl transcript: ENST00000560322
  gene symbol: CEP152
  hgvsc: ENST00000560322.1:c.-7-40A>G
  variant of: http://identifiers.org/hgnc/29298
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
reference allele: T

GenotypeQuality
all individuals: 952
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8070
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.464e1

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

FS
type: SiteQuality
SIO_000300: 2.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

DP
type: SiteQuality
SIO_000300: 1.899511e6

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 4.054e0

DP
type: SiteQuality
SIO_000300: 1.899391e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.054e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 1.899391e6

GenotypeQuality
all individuals: 43647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011141222523336e-5
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.27e-1

DP
type: SiteQuality
SIO_000300: 1.899343e6

FS
type: SiteQuality
SIO_000300: 9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.459e0

MQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.401e1

GenotypeQuality
all individuals: 931
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 4194
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.270608077583351e-4
allele num: 66406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.231527093596059e-3
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

QD
type: SiteQuality
SIO_000300: 1.106e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.900316e6

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518208379770475e-5
allele num: 66398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 1.899634e6

VQSLOD
type: SiteQuality
SIO_000300: -3.817e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.068e1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.157635467980295e-5
allele num: 16240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.895951e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42651
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.61e0

FS
type: SiteQuality
SIO_000300: 1.452e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.263e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.652e-1

DP
type: SiteQuality
SIO_000300: 1.886004e6

GenotypeQuality
all individuals: 3658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39930
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.099420555047271e-5
allele num: 65580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 5.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

DP
type: SiteQuality
SIO_000300: 1.859304e6

QD
type: SiteQuality
SIO_000300: 1.41e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525273786644703e-5
allele num: 65562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.859277e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.935e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 8.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 1029
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8063
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15726
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.545261167572678e-4
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.605e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.830058e6

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4587
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.314625850340137e-4
allele num: 9408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64874
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.105809506465124e-5
allele num: 10982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 6.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 1.819838e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2163
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.312721177127957e-5
allele num: 10738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.227e0

DP
type: SiteQuality
SIO_000300: 1.756183e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 1.921e0

QD
type: SiteQuality
SIO_000300: 5.65e0

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

GenotypeQuality
all individuals: 3501
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.190580503833516e-4
allele num: 9130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63132
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.236e1

DP
type: SiteQuality
SIO_000300: 1.663637e6

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 4.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3596
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.543646119617851e-5
allele num: 15282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.385e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.388e0

VQSLOD
type: SiteQuality
SIO_000300: -9.389e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

DP
type: SiteQuality
SIO_000300: 1.655965e6

QD
type: SiteQuality
SIO_000300: 1.563e1

GenotypeQuality
all individuals: 511
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.110864252388358e-4
allele num: 9002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 1.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

DP
type: SiteQuality
SIO_000300: 1.596113e6

GenotypeQuality
all individuals: 1148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 763
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.472898664571878e-4
allele num: 61104
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.283626398721169e-4
allele num: 8758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.549987e6

QD
type: SiteQuality
SIO_000300: 1.408e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.803646754660499e-5
allele num: 14698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.546343e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

FS
type: SiteQuality
SIO_000300: 6.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.629e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 668
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3748
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57760
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.314725940894166e-5
allele num: 15836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

QD
type: SiteQuality
SIO_000300: 9.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 1.579529e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

GenotypeQuality
all individuals: 561
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6890
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1042
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.265502404454569e-4
allele num: 15804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.926e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

DP
type: SiteQuality
SIO_000300: 1.593954e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.258e0

MQ
type: SiteQuality
SIO_000300: 6.196e1

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

QD
type: SiteQuality
SIO_000300: 6.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 544
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.327512022272843e-5
allele num: 15804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.291e0

QD
type: SiteQuality
SIO_000300: 5.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

MQ
type: SiteQuality
SIO_000300: 6.158e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.602403e6

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.948026649004558e-5
allele num: 51334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.503e0

MQ
type: SiteQuality
SIO_000300: 5.852e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.959e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.752409e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

QD
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
all individuals: 2842
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6077
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 703
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5609
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.001803245842517e-4
allele num: 9982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.576521950036381e-3
allele num: 8246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51818
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 6.8e0

MQ
type: SiteQuality
SIO_000300: 6.258e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.611e-1

DP
type: SiteQuality
SIO_000300: 1.765693e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 2650
bin: 1.75e1
variant carriers: 538

GenotypeQuality
all individuals: 3064
bin: 7.5e0
variant carriers: 650

GenotypeQuality
all individuals: 3564
bin: 2.75e1
variant carriers: 403

GenotypeQuality
all individuals: 1356
bin: 5.75e1
variant carriers: 102

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1048
bin: 8.25e1
variant carriers: 51

GenotypeQuality
all individuals: 3511
bin: 3.75e1
variant carriers: 214

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 40

GenotypeQuality
all individuals: 2227
bin: 6.75e1
variant carriers: 76

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 73

East Asian
type: Population
allele count: 162
allele frequency: 3.12982998454405e-2
allele num: 5176
num of homozygotes: 3

Other
type: Population
allele count: 10
allele frequency: 1.628664495114007e-2
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 131
allele frequency: 1.987860394537178e-2
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 128
allele frequency: 1.806888763410502e-2
allele num: 7084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1427
allele frequency: 3.410611854684512e-2
allele num: 41840
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 99
allele frequency: 1.951123374063855e-2
allele num: 5074
num of homozygotes: 3

South Asian
type: Population
allele count: 372
allele frequency: 2.919937205651491e-2
allele num: 12740
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 2.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.580000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.663328e6

MQ
type: SiteQuality
SIO_000300: 6.173e1

GenotypeQuality
all individuals: 8045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5569
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

FS
type: SiteQuality
SIO_000300: 3.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.966522e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.93191916850199e-5
allele num: 51762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14946
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.216e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.978524e6

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 4900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7656
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.93191916850199e-5
allele num: 51762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.244400199104032e-4
allele num: 8036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14946
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.216e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.978524e6

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

GenotypeQuality
all individuals: 2638
bin: 1.75e1
variant carriers: 443

GenotypeQuality
all individuals: 2032
bin: 4.75e1
variant carriers: 343

GenotypeQuality
all individuals: 1734
bin: 6.25e1
variant carriers: 313

GenotypeQuality
all individuals: 2368
bin: 2.75e1
variant carriers: 427

GenotypeQuality
all individuals: 713
bin: 9.25e1
variant carriers: 124

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 172

GenotypeQuality
all individuals: 2351
bin: 3.75e1
variant carriers: 442

GenotypeQuality
all individuals: 2934
bin: 2.25e1
variant carriers: 458

GenotypeQuality
all individuals: 2165
bin: 4.25e1
variant carriers: 434

GenotypeQuality
all individuals: 1908
bin: 5.25e1
variant carriers: 345

European (Non-Finnish)
type: Population
allele count: 2017
allele frequency: 6.264364246226474e-2
allele num: 32198
num of homozygotes: 6

African
type: Population
allele count: 379
allele frequency: 7.703252032520325e-2
allele num: 4920
num of homozygotes: 0

East Asian
type: Population
allele count: 580
allele frequency: 1.657142857142857e-1
allele num: 3500
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 303
allele frequency: 9.81853532080363e-2
allele num: 3086
num of homozygotes: 0

Latino
type: Population
allele count: 694
allele frequency: 1.416904859126174e-1
allele num: 4898
num of homozygotes: 24

South Asian
type: Population
allele count: 1178
allele frequency: 1.285464862505456e-1
allele num: 9164
num of homozygotes: 8

Other
type: Population
allele count: 40
allele frequency: 8.196721311475409e-2
allele num: 488
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.755019e6

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.041e1

QD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 4782
bin: 9.75e1
variant carriers: 201

GenotypeQuality
all individuals: 1734
bin: 6.25e1
variant carriers: 36

GenotypeQuality
all individuals: 1117
bin: 7.75e1
variant carriers: 29

GenotypeQuality
all individuals: 2907
bin: 7.5e0
variant carriers: 46

GenotypeQuality
all individuals: 2530
bin: 1.25e1
variant carriers: 57

GenotypeQuality
all individuals: 1908
bin: 5.25e1
variant carriers: 48

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 2032
bin: 4.75e1
variant carriers: 47

GenotypeQuality
all individuals: 2351
bin: 3.75e1
variant carriers: 42

GenotypeQuality
all individuals: 2638
bin: 1.75e1
variant carriers: 40

African
type: Population
allele count: 59
allele frequency: 1.199186991869919e-2
allele num: 4920
num of homozygotes: 1

South Asian
type: Population
allele count: 144
allele frequency: 1.571366215626364e-2
allele num: 9164
num of homozygotes: 0

Latino
type: Population
allele count: 143
allele frequency: 2.919559003674969e-2
allele num: 4898
num of homozygotes: 2

Other
type: Population
allele count: 10
allele frequency: 2.049180327868852e-2
allele num: 488
num of homozygotes: 0

East Asian
type: Population
allele count: 100
allele frequency: 2.857142857142857e-2
allele num: 3500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 7.453013609850939e-3
allele num: 3086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 182
allele frequency: 5.652525001552892e-3
allele num: 32198
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 2.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 6.041e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 1.755019e6

GenotypeQuality
all individuals: 1117
bin: 7.75e1
variant carriers: 302

GenotypeQuality
all individuals: 1435
bin: 6.75e1
variant carriers: 392

GenotypeQuality
all individuals: 2032
bin: 4.75e1
variant carriers: 577

GenotypeQuality
all individuals: 2351
bin: 3.75e1
variant carriers: 587

GenotypeQuality
all individuals: 2907
bin: 7.5e0
variant carriers: 630

GenotypeQuality
all individuals: 1734
bin: 6.25e1
variant carriers: 440

GenotypeQuality
all individuals: 19702
bin: 2.5e0
variant carriers: 600

GenotypeQuality
all individuals: 2397
bin: 3.25e1
variant carriers: 553

GenotypeQuality
all individuals: 2934
bin: 2.25e1
variant carriers: 627

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 269

South Asian
type: Population
allele count: 1139
allele frequency: 1.242907027498909e-1
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 71
allele frequency: 1.454918032786885e-1
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 827
allele frequency: 1.680894308943089e-1
allele num: 4920
num of homozygotes: 0

East Asian
type: Population
allele count: 221
allele frequency: 6.314285714285714e-2
allele num: 3500
num of homozygotes: 0

Latino
type: Population
allele count: 497
allele frequency: 1.014699877501021e-1
allele num: 4898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4793
allele frequency: 1.488601776507858e-1
allele num: 32198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 720
allele frequency: 2.333117303953338e-1
allele num: 3086
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.041e1

QD
type: SiteQuality
SIO_000300: 2.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.755019e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 1768
bin: 5.75e1
variant carriers: 41

GenotypeQuality
all individuals: 2165
bin: 4.25e1
variant carriers: 38

GenotypeQuality
all individuals: 2907
bin: 7.5e0
variant carriers: 101

GenotypeQuality
all individuals: 2934
bin: 2.25e1
variant carriers: 61

GenotypeQuality
all individuals: 2530
bin: 1.25e1
variant carriers: 73

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2638
bin: 1.75e1
variant carriers: 72

GenotypeQuality
all individuals: 2351
bin: 3.75e1
variant carriers: 40

GenotypeQuality
all individuals: 1734
bin: 6.25e1
variant carriers: 37

GenotypeQuality
all individuals: 4782
bin: 9.75e1
variant carriers: 44

East Asian
type: Population
allele count: 8
allele frequency: 2.285714285714286e-3
allele num: 3500
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 6.737443854634545e-3
allele num: 4898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 312
allele frequency: 9.690042859804958e-3
allele num: 32198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 8.425145819831496e-3
allele num: 3086
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 5.456132693147098e-3
allele num: 9164
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 1.260162601626016e-2
allele num: 4920
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 8.19672131147541e-3
allele num: 488
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.755019e6

QD
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 6.041e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 2530
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2351
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19702
bin: 2.5e0
variant carriers: 6

GenotypeQuality
all individuals: 1908
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1117
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1768
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.240440699935191e-4
allele num: 3086
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.219512195121951e-3
allele num: 4920
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 3.266639444671295e-3
allele num: 4898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 5.900987638983787e-4
allele num: 32198
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 2.857142857142857e-3
allele num: 3500
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.098360655737705e-3
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.291575731121781e-3
allele num: 9164
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.755019e6

MQ
type: SiteQuality
SIO_000300: 6.041e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 2.83e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.049180327868853e-3
allele num: 488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.518e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.041e1

QD
type: SiteQuality
SIO_000300: 2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.755019e6

GenotypeQuality
all individuals: 1286
bin: 2.25e1
variant carriers: 966

GenotypeQuality
all individuals: 1464
bin: 1.75e1
variant carriers: 1033

GenotypeQuality
all individuals: 15369
bin: 9.75e1
variant carriers: 15283

GenotypeQuality
all individuals: 1227
bin: 4.25e1
variant carriers: 1081

GenotypeQuality
all individuals: 1263
bin: 2.75e1
variant carriers: 1022

GenotypeQuality
all individuals: 688
bin: 9.25e1
variant carriers: 665

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 907

GenotypeQuality
all individuals: 948
bin: 6.75e1
variant carriers: 903

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 786

GenotypeQuality
all individuals: 764
bin: 8.75e1
variant carriers: 742

East Asian
type: Population
allele count: 1631
allele frequency: 4.83402489626556e-1
allele num: 3374
num of homozygotes: 64

European (Non-Finnish)
type: Population
allele count: 17269
allele frequency: 4.98211297674687e-1
allele num: 34662
num of homozygotes: 688

African
type: Population
allele count: 1963
allele frequency: 4.485831809872029e-1
allele num: 4376
num of homozygotes: 56

Latino
type: Population
allele count: 2021
allele frequency: 4.816491897044805e-1
allele num: 4196
num of homozygotes: 54

Other
type: Population
allele count: 223
allele frequency: 4.911894273127753e-1
allele num: 454
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 1467
allele frequency: 4.912926992632284e-1
allele num: 2986
num of homozygotes: 25

South Asian
type: Population
allele count: 4017
allele frequency: 4.710365853658536e-1
allele num: 8528
num of homozygotes: 95

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.124e1

DP
type: SiteQuality
SIO_000300: 1.407626e6

FS
type: SiteQuality
SIO_000300: 5.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

GenotypeQuality
all individuals: 1693
bin: 2.75e1
variant carriers: 768

GenotypeQuality
all individuals: 2080
bin: 1.75e1
variant carriers: 761

GenotypeQuality
all individuals: 2611
bin: 2.25e1
variant carriers: 816

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 296

GenotypeQuality
all individuals: 589
bin: 7.75e1
variant carriers: 397

GenotypeQuality
all individuals: 840
bin: 5.75e1
variant carriers: 542

GenotypeQuality
all individuals: 1465
bin: 3.25e1
variant carriers: 688

GenotypeQuality
all individuals: 1263
bin: 3.75e1
variant carriers: 718

GenotypeQuality
all individuals: 4827
bin: 9.75e1
variant carriers: 3885

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 274

GenotypeQuality
all individuals: 616
bin: 7.25e1
variant carriers: 414

East Asian
type: Population
allele count: 938
allele frequency: 2.916666666666667e-1
allele num: 3216
num of homozygotes: 5

African
type: Population
allele count: 1501
allele frequency: 3.671722113502935e-1
allele num: 4088
num of homozygotes: 16

Latino
type: Population
allele count: 734
allele frequency: 2.321315623023403e-1
allele num: 3162
num of homozygotes: 1

South Asian
type: Population
allele count: 1722
allele frequency: 2.493483927019983e-1
allele num: 6906
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 5965
allele frequency: 3.163113797857673e-1
allele num: 18858
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 435
allele frequency: 2.463193657984145e-1
allele num: 1766
num of homozygotes: 0

Other
type: Population
allele count: 79
allele frequency: 2.801418439716312e-1
allele num: 282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

DP
type: SiteQuality
SIO_000300: 1.911723e6

MQ
type: SiteQuality
SIO_000300: 6.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.502e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.619999999999999e0

QD
type: SiteQuality
SIO_000300: 2.93e0

FS
type: SiteQuality
SIO_000300: 3.404e0

GenotypeQuality
all individuals: 1574
bin: 4.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2464
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 3469
bin: 3.75e1
variant carriers: 33

GenotypeQuality
all individuals: 3123
bin: 1.75e1
variant carriers: 72

GenotypeQuality
all individuals: 883
bin: 5.75e1
variant carriers: 25

GenotypeQuality
all individuals: 9109
bin: 2.25e1
variant carriers: 56

GenotypeQuality
all individuals: 3435
bin: 7.5e0
variant carriers: 68

GenotypeQuality
all individuals: 4292
bin: 2.75e1
variant carriers: 48

GenotypeQuality
all individuals: 5212
bin: 3.25e1
variant carriers: 44

GenotypeQuality
all individuals: 681
bin: 9.25e1
variant carriers: 6

Latino
type: Population
allele count: 40
allele frequency: 5.356186395286556e-3
allele num: 7468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 128
allele frequency: 3.05591367043881e-3
allele num: 41886
num of homozygotes: 0

South Asian
type: Population
allele count: 105
allele frequency: 8.493771234428085e-3
allele num: 12362
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.26797385620915e-3
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 62
allele frequency: 1.145179165127447e-2
allele num: 5414
num of homozygotes: 0

African
type: Population
allele count: 100
allele frequency: 1.668335001668335e-2
allele num: 5994
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: -2.3e0

MQ
type: SiteQuality
SIO_000300: 6.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.157491e6

FS
type: SiteQuality
SIO_000300: 3.268e0

QD
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
all individuals: 1368
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5428
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1870
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2027
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 778
bin: 5.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.071680132587529e-4
allele num: 9654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.725208750258781e-4
allele num: 57964
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.371903235208394e-4
allele num: 6862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.187930624851509e-4
allele num: 8418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 4.993e0

VQSLOD
type: SiteQuality
SIO_000300: -3.072e0

MQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.531e0

QD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.081e1

DP
type: SiteQuality
SIO_000300: 2.164637e6

GenotypeQuality
all individuals: 2397
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4920
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5846
bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 1
allele frequency: 6.355662895640016e-5
allele num: 15734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.624929610122893e-5
allele num: 60378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.809e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

FS
type: SiteQuality
SIO_000300: 1.155e0

DP
type: SiteQuality
SIO_000300: 2.169792e6

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.786e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.943e0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5862
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 5532
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.313928526329082e-5
allele num: 15838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.299001576458224e-4
allele num: 60896
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.13947128532361e-4
allele num: 8776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.90777647518562e-4
allele num: 10236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0704e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 4.801e1

QD
type: SiteQuality
SIO_000300: 1.778e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 2.171702e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.367e0

VQSLOD
type: SiteQuality
SIO_000300: -4.104e0

MQRankSum
type: SiteQuality
SIO_000300: -3.874e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13739
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7654
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63377336295909e-5
allele num: 61208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.034e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.863e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.455e1

MQRankSum
type: SiteQuality
SIO_000300: -3.78e0

DP
type: SiteQuality
SIO_000300: 2.173843e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.614e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 4650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.258494840171155e-4
allele num: 7946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.142857142857143e-4
allele num: 8750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.026e1

VQSLOD
type: SiteQuality
SIO_000300: -3.655e0

DP
type: SiteQuality
SIO_000300: 2.191651e6

FS
type: SiteQuality
SIO_000300: 2.9113e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
all individuals: 1639
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5817
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.406149903907751e-5
allele num: 15610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.655e0

QD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 2.191651e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.9113e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

GenotypeQuality
all individuals: 12474
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.758705592683785e-4
allele num: 5686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.087429317094389e-4
allele num: 55176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.541782300339192e-4
allele num: 12972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.756234632946962e-4
allele num: 5694
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.445922498554077e-4
allele num: 6916
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8465e1

VQSLOD
type: SiteQuality
SIO_000300: -3.666e0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 2.135349e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

QD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 4967
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 12545
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1922
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2025
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 5002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6736
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.837684449489217e-4
allele num: 7048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 5.063025943643284e-4
allele num: 57278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.874219075385256e-3
allele num: 4802
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.344086021505376e-3
allele num: 744
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.461841457410143e-4
allele num: 8124
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.498194945848375e-4
allele num: 13850
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.11864406779661e-4
allele num: 9440
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 1.7653e1

VQSLOD
type: SiteQuality
SIO_000300: -2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.909e0

QD
type: SiteQuality
SIO_000300: 4.32e0

DP
type: SiteQuality
SIO_000300: 2.077551e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542686125080991e-5
allele num: 64822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.516e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 1.0802e1

QD
type: SiteQuality
SIO_000300: 1.321e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 2.147641e6

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9054
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.072271070126528e-4
allele num: 9326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140997297961189e-5
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.175717e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.444e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4389
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.070434596446157e-4
allele num: 9342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.148e1

FS
type: SiteQuality
SIO_000300: 2.722e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 2.18612e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 294
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53477807109092e-5
allele num: 65156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 5.525e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

DP
type: SiteQuality
SIO_000300: 2.20398e6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9714
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524715640533041e-5
allele num: 65586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.602e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.083e1

DP
type: SiteQuality
SIO_000300: 2.213523e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.184e0

FS
type: SiteQuality
SIO_000300: 1.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.237e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
all individuals: 2180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516760200212346e-5
allele num: 65930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.220036e6

FS
type: SiteQuality
SIO_000300: 1.088e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: -3.145e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9961
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516622179082747e-5
allele num: 65936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

FS
type: SiteQuality
SIO_000300: 1.519e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.220446e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9999
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 4.427577482605946e-3
allele num: 9486
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 1.978e0

DP
type: SiteQuality
SIO_000300: 2.224929e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9994
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.053518752633797e-4
allele num: 9492
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.047294002925402e-4
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

FS
type: SiteQuality
SIO_000300: 4.943e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.223935e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: -2.632e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 9994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51308821304282e-5
allele num: 66090
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 5.955e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

VQSLOD
type: SiteQuality
SIO_000300: -8.041e-1

QD
type: SiteQuality
SIO_000300: 5.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 2.224469e6

GenotypeQuality
all individuals: 1893
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9993
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510665296996797e-5
allele num: 66196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

FS
type: SiteQuality
SIO_000300: 5.447e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 2.226476e6

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10023
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.606882168925965e-4
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825483753194597e-4
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.680375637889906e-4
allele num: 66234
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 2.229556e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.816e0

DP
type: SiteQuality
SIO_000300: 2.227699e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.04e1

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

VQSLOD
type: SiteQuality
SIO_000300: -1.353e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.496e0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.909e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

FS
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 2.227805e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.707e0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

QD
type: SiteQuality
SIO_000300: 1.615e1

FS
type: SiteQuality
SIO_000300: 1.149e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.229311e6

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.774e0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10008
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.038853106170787e-4
allele num: 9626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 4.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e0

MQ
type: SiteQuality
SIO_000300: 5.847e1

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 2.229574e6

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

FS
type: SiteQuality
SIO_000300: 2.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.918e0

DP
type: SiteQuality
SIO_000300: 2.229695e6

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10024
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1893
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.669799951795613e-4
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

FS
type: SiteQuality
SIO_000300: 1.167e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 2.23134e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

VQSLOD
type: SiteQuality
SIO_000300: -7.216e-1

DP
type: SiteQuality
SIO_000300: 2.229511e6

QD
type: SiteQuality
SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 8.65e0

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10020
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326663564448581e-4
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: -7.216e-1

DP
type: SiteQuality
SIO_000300: 2.229511e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

QD
type: SiteQuality
SIO_000300: 1.342e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.049606775559589e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012501882813677e-5
allele num: 66390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 2.22968e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.229275e6

MQ
type: SiteQuality
SIO_000300: 5.832e1

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 8.182e0

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
all individuals: 4706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10026
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

DP
type: SiteQuality
SIO_000300: 2.229162e6

QD
type: SiteQuality
SIO_000300: 1.144e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.247e0

FS
type: SiteQuality
SIO_000300: 1.367e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
all individuals: 2193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9882
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.801e-1

DP
type: SiteQuality
SIO_000300: 2.228552e6

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10028
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.489995346672871e-4
allele num: 8596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.1227e1

DP
type: SiteQuality
SIO_000300: 2.228224e6

QD
type: SiteQuality
SIO_000300: 1.312e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

GenotypeQuality
all individuals: 22540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10035
bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054312136638853e-4
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 2.227461e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

FS
type: SiteQuality
SIO_000300: 8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

GenotypeQuality
all individuals: 343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.112e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 2.227111e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.465e-1

GenotypeQuality
all individuals: 9784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10036
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0